Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02253

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02252 and MPMX20_02253 overlap by 1 nucleotidesMPMX20_02253 and MPMX20_02254 are separated by 9 nucleotidesMPMX20_02254 and MPMX20_02255 are separated by 52 nucleotides MPMX20_02252: MPMX20_02252 - hypothetical protein, at 2,365,107 to 2,366,180 _02252 MPMX20_02253: MPMX20_02253 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,180 to 2,366,977 _02253 MPMX20_02254: MPMX20_02254 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,987 to 2,367,685 _02254 MPMX20_02255: MPMX20_02255 - Metal-binding protein ZinT, at 2,367,738 to 2,368,376 _02255 Position (kb) 2366 2367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2365.319 kb on - strand, within MPMX20_02252at 2365.447 kb on - strand, within MPMX20_02252at 2365.462 kb on - strand, within MPMX20_02252at 2365.473 kb on - strand, within MPMX20_02252at 2365.494 kb on - strand, within MPMX20_02252at 2365.551 kb on - strand, within MPMX20_02252at 2365.596 kb on + strand, within MPMX20_02252at 2365.722 kb on - strand, within MPMX20_02252at 2365.732 kb on - strand, within MPMX20_02252at 2365.732 kb on - strand, within MPMX20_02252at 2365.760 kb on + strand, within MPMX20_02252at 2365.882 kb on - strand, within MPMX20_02252at 2365.910 kb on - strand, within MPMX20_02252at 2365.915 kb on - strand, within MPMX20_02252at 2365.926 kb on - strand, within MPMX20_02252at 2365.964 kb on + strand, within MPMX20_02252at 2366.004 kb on - strand, within MPMX20_02252at 2366.045 kb on + strand, within MPMX20_02252at 2366.183 kb on - strandat 2366.252 kb on - strandat 2366.314 kb on + strand, within MPMX20_02253at 2366.322 kb on - strand, within MPMX20_02253at 2366.335 kb on - strand, within MPMX20_02253at 2366.358 kb on - strand, within MPMX20_02253at 2366.420 kb on + strand, within MPMX20_02253at 2366.595 kb on - strand, within MPMX20_02253at 2366.624 kb on - strand, within MPMX20_02253at 2366.624 kb on - strand, within MPMX20_02253at 2366.632 kb on + strand, within MPMX20_02253at 2366.677 kb on + strand, within MPMX20_02253at 2366.685 kb on - strand, within MPMX20_02253at 2366.688 kb on + strand, within MPMX20_02253at 2366.688 kb on + strand, within MPMX20_02253at 2366.696 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.811 kb on - strand, within MPMX20_02253at 2366.837 kb on - strand, within MPMX20_02253at 2366.919 kb on + strandat 2366.928 kb on + strandat 2366.950 kb on + strandat 2366.974 kb on + strandat 2366.974 kb on + strandat 2367.003 kb on + strandat 2367.027 kb on + strandat 2367.123 kb on - strand, within MPMX20_02254at 2367.123 kb on - strand, within MPMX20_02254at 2367.131 kb on + strand, within MPMX20_02254at 2367.187 kb on + strand, within MPMX20_02254at 2367.220 kb on + strand, within MPMX20_02254at 2367.271 kb on - strand, within MPMX20_02254at 2367.324 kb on - strand, within MPMX20_02254at 2367.514 kb on + strand, within MPMX20_02254at 2367.576 kb on + strand, within MPMX20_02254at 2367.587 kb on + strand, within MPMX20_02254at 2367.587 kb on + strand, within MPMX20_02254at 2367.628 kb on + strandat 2367.635 kb on - strandat 2367.637 kb on + strandat 2367.645 kb on - strandat 2367.782 kb on + strandat 2367.790 kb on + strandat 2367.790 kb on - strandat 2367.793 kb on - strandat 2367.797 kb on + strandat 2367.798 kb on - strandat 2367.845 kb on - strand, within MPMX20_02255at 2367.901 kb on + strand, within MPMX20_02255at 2367.902 kb on + strand, within MPMX20_02255

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,365,319 - MPMX20_02252 0.20 -3.5
2,365,447 - MPMX20_02252 0.32 -3.4
2,365,462 - MPMX20_02252 0.33 -2.1
2,365,473 - MPMX20_02252 0.34 -1.4
2,365,494 - MPMX20_02252 0.36 +1.1
2,365,551 - MPMX20_02252 0.41 -3.5
2,365,596 + MPMX20_02252 0.46 -3.4
2,365,722 - MPMX20_02252 0.57 -2.3
2,365,732 - MPMX20_02252 0.58 -0.5
2,365,732 - MPMX20_02252 0.58 -2.8
2,365,760 + MPMX20_02252 0.61 -1.7
2,365,882 - MPMX20_02252 0.72 -2.8
2,365,910 - MPMX20_02252 0.75 -2.7
2,365,915 - MPMX20_02252 0.75 -2.4
2,365,926 - MPMX20_02252 0.76 +0.0
2,365,964 + MPMX20_02252 0.80 -3.7
2,366,004 - MPMX20_02252 0.84 -0.1
2,366,045 + MPMX20_02252 0.87 -3.1
2,366,183 - -2.0
2,366,252 - -1.9
2,366,314 + MPMX20_02253 0.17 -2.3
2,366,322 - MPMX20_02253 0.18 -2.6
2,366,335 - MPMX20_02253 0.19 -2.9
2,366,358 - MPMX20_02253 0.22 -2.2
2,366,420 + MPMX20_02253 0.30 -2.4
2,366,595 - MPMX20_02253 0.52 -0.7
2,366,624 - MPMX20_02253 0.56 -3.9
2,366,624 - MPMX20_02253 0.56 -1.7
2,366,632 + MPMX20_02253 0.57 -2.4
2,366,677 + MPMX20_02253 0.62 -1.1
2,366,685 - MPMX20_02253 0.63 -0.9
2,366,688 + MPMX20_02253 0.64 -1.2
2,366,688 + MPMX20_02253 0.64 -0.5
2,366,696 - MPMX20_02253 0.65 -3.0
2,366,801 - MPMX20_02253 0.78 -2.1
2,366,801 - MPMX20_02253 0.78 -0.5
2,366,801 - MPMX20_02253 0.78 -2.0
2,366,803 + MPMX20_02253 0.78 -1.4
2,366,803 + MPMX20_02253 0.78 -3.3
2,366,803 + MPMX20_02253 0.78 -1.4
2,366,803 + MPMX20_02253 0.78 -1.3
2,366,803 + MPMX20_02253 0.78 -0.1
2,366,811 - MPMX20_02253 0.79 -1.9
2,366,837 - MPMX20_02253 0.82 -0.3
2,366,919 + -1.7
2,366,928 + -0.8
2,366,950 + -4.0
2,366,974 + +0.9
2,366,974 + -1.5
2,367,003 + -2.1
2,367,027 + -1.1
2,367,123 - MPMX20_02254 0.19 -1.7
2,367,123 - MPMX20_02254 0.19 -2.9
2,367,131 + MPMX20_02254 0.21 -2.6
2,367,187 + MPMX20_02254 0.29 -3.1
2,367,220 + MPMX20_02254 0.33 +0.5
2,367,271 - MPMX20_02254 0.41 -1.1
2,367,324 - MPMX20_02254 0.48 -2.2
2,367,514 + MPMX20_02254 0.75 -2.0
2,367,576 + MPMX20_02254 0.84 -1.5
2,367,587 + MPMX20_02254 0.86 -3.1
2,367,587 + MPMX20_02254 0.86 -2.9
2,367,628 + -4.7
2,367,635 - -1.7
2,367,637 + -3.2
2,367,645 - -1.0
2,367,782 + -0.7
2,367,790 + +1.1
2,367,790 - +0.5
2,367,793 - -1.8
2,367,797 + -1.1
2,367,798 - +0.2
2,367,845 - MPMX20_02255 0.17 +2.0
2,367,901 + MPMX20_02255 0.26 -0.8
2,367,902 + MPMX20_02255 0.26 +0.0

Or see this region's nucleotide sequence