Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02025 and MPMX20_02026 are separated by 54 nucleotides MPMX20_02026 and MPMX20_02027 are separated by 92 nucleotides MPMX20_02027 and MPMX20_02028 overlap by 4 nucleotides MPMX20_02028 and MPMX20_02029 are separated by 39 nucleotides
MPMX20_02025: MPMX20_02025 - hypothetical protein, at 2,117,738 to 2,118,106
_02025
MPMX20_02026: MPMX20_02026 - Transcriptional regulatory protein RstA, at 2,118,161 to 2,118,913
_02026
MPMX20_02027: MPMX20_02027 - Inner membrane protein YdgC, at 2,119,006 to 2,119,341
_02027
MPMX20_02028: MPMX20_02028 - Dihydromonapterin reductase, at 2,119,338 to 2,120,060
_02028
MPMX20_02029: MPMX20_02029 - Putative arginine/ornithine antiporter, at 2,120,100 to 2,121,482
_02029
Position (kb)
2119
2120 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2118.072 kb on - strand at 2118.072 kb on - strand at 2118.121 kb on - strand at 2118.121 kb on - strand at 2118.123 kb on + strand at 2118.138 kb on - strand at 2118.138 kb on - strand at 2118.163 kb on + strand at 2118.168 kb on + strand at 2118.172 kb on - strand at 2118.210 kb on + strand at 2118.210 kb on + strand at 2118.218 kb on - strand at 2118.234 kb on - strand at 2118.242 kb on - strand, within MPMX20_02026 at 2118.242 kb on - strand, within MPMX20_02026 at 2118.242 kb on - strand, within MPMX20_02026 at 2118.282 kb on - strand, within MPMX20_02026 at 2118.282 kb on - strand, within MPMX20_02026 at 2118.377 kb on - strand, within MPMX20_02026 at 2118.426 kb on + strand, within MPMX20_02026 at 2118.483 kb on + strand, within MPMX20_02026 at 2118.607 kb on - strand, within MPMX20_02026 at 2118.660 kb on - strand, within MPMX20_02026 at 2118.660 kb on - strand, within MPMX20_02026 at 2118.672 kb on - strand, within MPMX20_02026 at 2118.710 kb on - strand, within MPMX20_02026 at 2118.715 kb on + strand, within MPMX20_02026 at 2118.723 kb on - strand, within MPMX20_02026 at 2118.763 kb on + strand, within MPMX20_02026 at 2118.768 kb on - strand, within MPMX20_02026 at 2118.785 kb on - strand, within MPMX20_02026 at 2118.795 kb on - strand, within MPMX20_02026 at 2118.797 kb on - strand, within MPMX20_02026 at 2118.815 kb on - strand, within MPMX20_02026 at 2118.830 kb on + strand, within MPMX20_02026 at 2118.905 kb on + strand at 2118.905 kb on + strand at 2118.905 kb on + strand at 2118.913 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.920 kb on + strand at 2118.921 kb on + strand at 2118.921 kb on + strand at 2118.921 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.928 kb on - strand at 2118.939 kb on - strand at 2118.978 kb on - strand at 2119.004 kb on + strand at 2119.049 kb on - strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.050 kb on + strand, within MPMX20_02027 at 2119.058 kb on - strand, within MPMX20_02027 at 2119.058 kb on - strand, within MPMX20_02027 at 2119.058 kb on - strand, within MPMX20_02027 at 2119.061 kb on - strand, within MPMX20_02027 at 2119.065 kb on + strand, within MPMX20_02027 at 2119.098 kb on + strand, within MPMX20_02027 at 2119.098 kb on + strand, within MPMX20_02027 at 2119.106 kb on - strand, within MPMX20_02027 at 2119.106 kb on - strand, within MPMX20_02027 at 2119.106 kb on - strand, within MPMX20_02027 at 2119.107 kb on + strand, within MPMX20_02027 at 2119.107 kb on + strand, within MPMX20_02027 at 2119.115 kb on - strand, within MPMX20_02027 at 2119.116 kb on - strand, within MPMX20_02027 at 2119.122 kb on - strand, within MPMX20_02027 at 2119.142 kb on - strand, within MPMX20_02027 at 2119.150 kb on - strand, within MPMX20_02027 at 2119.157 kb on + strand, within MPMX20_02027 at 2119.177 kb on + strand, within MPMX20_02027 at 2119.178 kb on - strand, within MPMX20_02027 at 2119.255 kb on - strand, within MPMX20_02027 at 2119.262 kb on + strand, within MPMX20_02027 at 2119.262 kb on + strand, within MPMX20_02027 at 2119.262 kb on + strand, within MPMX20_02027 at 2119.268 kb on - strand, within MPMX20_02027 at 2119.270 kb on - strand, within MPMX20_02027 at 2119.270 kb on - strand, within MPMX20_02027 at 2119.277 kb on + strand, within MPMX20_02027 at 2119.289 kb on + strand, within MPMX20_02027 at 2119.297 kb on - strand, within MPMX20_02027 at 2119.297 kb on - strand, within MPMX20_02027 at 2119.301 kb on + strand, within MPMX20_02027 at 2119.309 kb on - strand at 2119.309 kb on - strand at 2119.331 kb on + strand at 2119.371 kb on + strand at 2119.372 kb on - strand at 2119.379 kb on - strand at 2119.481 kb on + strand, within MPMX20_02028 at 2119.528 kb on + strand, within MPMX20_02028 at 2119.553 kb on + strand, within MPMX20_02028 at 2119.561 kb on - strand, within MPMX20_02028 at 2119.624 kb on + strand, within MPMX20_02028 at 2119.684 kb on - strand, within MPMX20_02028 at 2119.703 kb on + strand, within MPMX20_02028 at 2119.703 kb on + strand, within MPMX20_02028 at 2119.703 kb on + strand, within MPMX20_02028 at 2119.710 kb on + strand, within MPMX20_02028 at 2119.711 kb on - strand, within MPMX20_02028 at 2119.711 kb on - strand, within MPMX20_02028 at 2119.711 kb on - strand, within MPMX20_02028 at 2119.718 kb on - strand, within MPMX20_02028 at 2119.755 kb on - strand, within MPMX20_02028 at 2119.765 kb on - strand, within MPMX20_02028 at 2119.801 kb on - strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.826 kb on + strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.834 kb on - strand, within MPMX20_02028 at 2119.860 kb on + strand, within MPMX20_02028 at 2119.997 kb on + strand at 2120.016 kb on + strand at 2120.041 kb on - strand at 2120.120 kb on - strand at 2120.137 kb on + strand at 2120.145 kb on - strand at 2120.171 kb on + strand at 2120.219 kb on - strand at 2120.225 kb on - strand at 2120.233 kb on + strand at 2120.267 kb on - strand, within MPMX20_02029 at 2120.269 kb on - strand, within MPMX20_02029
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 2,118,072 - -0.8 2,118,072 - +0.1 2,118,121 - +0.4 2,118,121 - -0.2 2,118,123 + -0.8 2,118,138 - -3.1 2,118,138 - -0.3 2,118,163 + -0.4 2,118,168 + +0.6 2,118,172 - -1.7 2,118,210 + +0.5 2,118,210 + -0.5 2,118,218 - -0.5 2,118,234 - +0.1 2,118,242 - MPMX20_02026 0.11 +0.4 2,118,242 - MPMX20_02026 0.11 -0.2 2,118,242 - MPMX20_02026 0.11 +0.0 2,118,282 - MPMX20_02026 0.16 -1.4 2,118,282 - MPMX20_02026 0.16 +0.5 2,118,377 - MPMX20_02026 0.29 -0.3 2,118,426 + MPMX20_02026 0.35 +1.0 2,118,483 + MPMX20_02026 0.43 -3.2 2,118,607 - MPMX20_02026 0.59 -1.2 2,118,660 - MPMX20_02026 0.66 +0.9 2,118,660 - MPMX20_02026 0.66 -0.7 2,118,672 - MPMX20_02026 0.68 -1.2 2,118,710 - MPMX20_02026 0.73 -0.8 2,118,715 + MPMX20_02026 0.74 -1.7 2,118,723 - MPMX20_02026 0.75 -0.7 2,118,763 + MPMX20_02026 0.80 +0.7 2,118,768 - MPMX20_02026 0.81 +1.9 2,118,785 - MPMX20_02026 0.83 -0.6 2,118,795 - MPMX20_02026 0.84 -2.2 2,118,797 - MPMX20_02026 0.84 +0.1 2,118,815 - MPMX20_02026 0.87 +0.6 2,118,830 + MPMX20_02026 0.89 +0.0 2,118,905 + -0.4 2,118,905 + +0.2 2,118,905 + -0.1 2,118,913 + -0.6 2,118,920 + +0.4 2,118,920 + +0.9 2,118,920 + +0.0 2,118,920 + -0.4 2,118,920 + -1.4 2,118,920 + +0.0 2,118,920 + -1.2 2,118,920 + +0.3 2,118,920 + -0.5 2,118,921 + -0.8 2,118,921 + -0.1 2,118,921 - -0.4 2,118,928 - +1.2 2,118,928 - +1.0 2,118,928 - +1.9 2,118,928 - +1.4 2,118,928 - -0.3 2,118,928 - +0.0 2,118,928 - -0.2 2,118,928 - +0.6 2,118,928 - -0.1 2,118,928 - +0.6 2,118,928 - -0.3 2,118,939 - +0.0 2,118,978 - -0.9 2,119,004 + -0.3 2,119,049 - MPMX20_02027 0.13 -2.3 2,119,050 + MPMX20_02027 0.13 -1.8 2,119,050 + MPMX20_02027 0.13 -1.7 2,119,050 + MPMX20_02027 0.13 -2.7 2,119,050 + MPMX20_02027 0.13 -1.0 2,119,050 + MPMX20_02027 0.13 -1.7 2,119,050 + MPMX20_02027 0.13 +0.0 2,119,050 + MPMX20_02027 0.13 -2.7 2,119,050 + MPMX20_02027 0.13 +0.4 2,119,050 + MPMX20_02027 0.13 +0.0 2,119,058 - MPMX20_02027 0.15 +2.0 2,119,058 - MPMX20_02027 0.15 -2.4 2,119,058 - MPMX20_02027 0.15 -1.4 2,119,061 - MPMX20_02027 0.16 -2.1 2,119,065 + MPMX20_02027 0.18 -1.8 2,119,098 + MPMX20_02027 0.27 -1.6 2,119,098 + MPMX20_02027 0.27 -0.8 2,119,106 - MPMX20_02027 0.30 -3.6 2,119,106 - MPMX20_02027 0.30 -3.2 2,119,106 - MPMX20_02027 0.30 -1.2 2,119,107 + MPMX20_02027 0.30 -4.3 2,119,107 + MPMX20_02027 0.30 -0.6 2,119,115 - MPMX20_02027 0.32 -1.0 2,119,116 - MPMX20_02027 0.33 -0.6 2,119,122 - MPMX20_02027 0.35 -1.0 2,119,142 - MPMX20_02027 0.40 -0.4 2,119,150 - MPMX20_02027 0.43 +0.0 2,119,157 + MPMX20_02027 0.45 -2.9 2,119,177 + MPMX20_02027 0.51 -0.5 2,119,178 - MPMX20_02027 0.51 -0.6 2,119,255 - MPMX20_02027 0.74 -1.7 2,119,262 + MPMX20_02027 0.76 -1.3 2,119,262 + MPMX20_02027 0.76 -2.3 2,119,262 + MPMX20_02027 0.76 -0.5 2,119,268 - MPMX20_02027 0.78 -1.5 2,119,270 - MPMX20_02027 0.79 -0.4 2,119,270 - MPMX20_02027 0.79 -0.6 2,119,277 + MPMX20_02027 0.81 -1.1 2,119,289 + MPMX20_02027 0.84 -2.0 2,119,297 - MPMX20_02027 0.87 -0.8 2,119,297 - MPMX20_02027 0.87 -3.2 2,119,301 + MPMX20_02027 0.88 -2.8 2,119,309 - -2.4 2,119,309 - -4.1 2,119,331 + -1.2 2,119,371 + +1.6 2,119,372 - -0.1 2,119,379 - +0.2 2,119,481 + MPMX20_02028 0.20 -2.1 2,119,528 + MPMX20_02028 0.26 -0.4 2,119,553 + MPMX20_02028 0.30 +0.6 2,119,561 - MPMX20_02028 0.31 -0.0 2,119,624 + MPMX20_02028 0.40 +1.6 2,119,684 - MPMX20_02028 0.48 +1.3 2,119,703 + MPMX20_02028 0.50 +0.8 2,119,703 + MPMX20_02028 0.50 +0.5 2,119,703 + MPMX20_02028 0.50 -1.6 2,119,710 + MPMX20_02028 0.51 -1.2 2,119,711 - MPMX20_02028 0.52 +0.5 2,119,711 - MPMX20_02028 0.52 -0.6 2,119,711 - MPMX20_02028 0.52 -0.1 2,119,718 - MPMX20_02028 0.53 +0.3 2,119,755 - MPMX20_02028 0.58 +0.7 2,119,765 - MPMX20_02028 0.59 -0.4 2,119,801 - MPMX20_02028 0.64 +0.7 2,119,826 + MPMX20_02028 0.67 +1.1 2,119,826 + MPMX20_02028 0.67 -1.4 2,119,826 + MPMX20_02028 0.67 -0.1 2,119,826 + MPMX20_02028 0.67 -2.3 2,119,826 + MPMX20_02028 0.67 +1.0 2,119,826 + MPMX20_02028 0.67 -0.5 2,119,834 - MPMX20_02028 0.69 +0.3 2,119,834 - MPMX20_02028 0.69 +1.3 2,119,834 - MPMX20_02028 0.69 -0.1 2,119,834 - MPMX20_02028 0.69 -1.8 2,119,834 - MPMX20_02028 0.69 +1.3 2,119,834 - MPMX20_02028 0.69 +2.3 2,119,860 + MPMX20_02028 0.72 -0.2 2,119,997 + +1.3 2,120,016 + +0.7 2,120,041 - -1.0 2,120,120 - -0.5 2,120,137 + -0.2 2,120,145 - +0.2 2,120,171 + +2.2 2,120,219 - -0.8 2,120,225 - -0.0 2,120,233 + -1.3 2,120,267 - MPMX20_02029 0.12 +0.4 2,120,269 - MPMX20_02029 0.12 +0.3
Or see this region's nucleotide sequence