Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01498

Experiment: Putrescine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01496 and MPMX20_01497 are separated by 10 nucleotidesMPMX20_01497 and MPMX20_01498 overlap by 4 nucleotidesMPMX20_01498 and MPMX20_01499 are separated by 65 nucleotidesMPMX20_01499 and MPMX20_01500 are separated by 40 nucleotides MPMX20_01496: MPMX20_01496 - Spermidine/putrescine import ATP-binding protein PotA, at 1,565,488 to 1,566,621 _01496 MPMX20_01497: MPMX20_01497 - Putrescine transport system permease protein PotH, at 1,566,632 to 1,567,585 _01497 MPMX20_01498: MPMX20_01498 - Inner membrane ABC transporter permease protein YdcV, at 1,567,582 to 1,568,427 _01498 MPMX20_01499: MPMX20_01499 - Inner membrane protein YbjO, at 1,568,493 to 1,568,966 _01499 MPMX20_01500: MPMX20_01500 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 1,569,007 to 1,570,134 _01500 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1566.597 kb on + strandat 1566.599 kb on + strandat 1566.599 kb on + strandat 1566.602 kb on + strandat 1566.607 kb on - strandat 1566.607 kb on - strandat 1566.639 kb on + strandat 1566.639 kb on + strandat 1566.647 kb on + strandat 1566.655 kb on - strandat 1566.683 kb on - strandat 1566.836 kb on + strand, within MPMX20_01497at 1566.859 kb on + strand, within MPMX20_01497at 1566.870 kb on + strand, within MPMX20_01497at 1566.870 kb on + strand, within MPMX20_01497at 1566.870 kb on + strand, within MPMX20_01497at 1566.870 kb on + strand, within MPMX20_01497at 1566.870 kb on + strand, within MPMX20_01497at 1566.878 kb on - strand, within MPMX20_01497at 1566.991 kb on + strand, within MPMX20_01497at 1566.991 kb on + strand, within MPMX20_01497at 1566.999 kb on - strand, within MPMX20_01497at 1566.999 kb on - strand, within MPMX20_01497at 1567.140 kb on + strand, within MPMX20_01497at 1567.159 kb on + strand, within MPMX20_01497at 1567.159 kb on + strand, within MPMX20_01497at 1567.159 kb on + strand, within MPMX20_01497at 1567.167 kb on - strand, within MPMX20_01497at 1567.214 kb on + strand, within MPMX20_01497at 1567.247 kb on + strand, within MPMX20_01497at 1567.255 kb on - strand, within MPMX20_01497at 1567.255 kb on - strand, within MPMX20_01497at 1567.281 kb on - strand, within MPMX20_01497at 1567.284 kb on + strand, within MPMX20_01497at 1567.292 kb on - strand, within MPMX20_01497at 1567.315 kb on - strand, within MPMX20_01497at 1567.404 kb on + strand, within MPMX20_01497at 1567.412 kb on - strand, within MPMX20_01497at 1567.482 kb on + strand, within MPMX20_01497at 1567.490 kb on - strandat 1567.605 kb on - strandat 1567.710 kb on - strand, within MPMX20_01498at 1567.778 kb on + strand, within MPMX20_01498at 1567.786 kb on - strand, within MPMX20_01498at 1567.786 kb on - strand, within MPMX20_01498at 1567.916 kb on + strand, within MPMX20_01498at 1568.028 kb on + strand, within MPMX20_01498at 1568.052 kb on + strand, within MPMX20_01498at 1568.066 kb on - strand, within MPMX20_01498at 1568.159 kb on - strand, within MPMX20_01498at 1568.247 kb on - strand, within MPMX20_01498at 1568.259 kb on + strand, within MPMX20_01498at 1568.299 kb on - strand, within MPMX20_01498at 1568.304 kb on + strand, within MPMX20_01498at 1568.316 kb on + strand, within MPMX20_01498at 1568.316 kb on + strand, within MPMX20_01498at 1568.327 kb on + strand, within MPMX20_01498at 1568.327 kb on + strand, within MPMX20_01498at 1568.335 kb on - strand, within MPMX20_01498at 1568.337 kb on + strand, within MPMX20_01498at 1568.411 kb on - strandat 1568.491 kb on + strandat 1568.537 kb on - strandat 1568.539 kb on + strandat 1568.539 kb on + strandat 1568.547 kb on - strand, within MPMX20_01499at 1568.549 kb on + strand, within MPMX20_01499at 1568.549 kb on + strand, within MPMX20_01499at 1568.557 kb on - strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.587 kb on + strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.595 kb on - strand, within MPMX20_01499at 1568.606 kb on + strand, within MPMX20_01499at 1568.612 kb on + strand, within MPMX20_01499at 1568.612 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.614 kb on + strand, within MPMX20_01499at 1568.615 kb on - strand, within MPMX20_01499at 1568.615 kb on - strand, within MPMX20_01499at 1568.622 kb on - strand, within MPMX20_01499at 1568.622 kb on - strand, within MPMX20_01499at 1568.622 kb on - strand, within MPMX20_01499at 1568.624 kb on + strand, within MPMX20_01499at 1568.653 kb on + strand, within MPMX20_01499at 1568.653 kb on + strand, within MPMX20_01499at 1568.661 kb on - strand, within MPMX20_01499at 1568.662 kb on + strand, within MPMX20_01499at 1568.663 kb on - strand, within MPMX20_01499at 1568.663 kb on - strand, within MPMX20_01499at 1568.668 kb on + strand, within MPMX20_01499at 1568.692 kb on + strand, within MPMX20_01499at 1568.692 kb on + strand, within MPMX20_01499at 1568.692 kb on + strand, within MPMX20_01499at 1568.692 kb on + strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.700 kb on - strand, within MPMX20_01499at 1568.825 kb on - strand, within MPMX20_01499at 1568.845 kb on - strand, within MPMX20_01499at 1568.876 kb on - strand, within MPMX20_01499at 1569.019 kb on + strandat 1569.021 kb on + strandat 1569.027 kb on - strandat 1569.027 kb on - strandat 1569.029 kb on - strandat 1569.029 kb on - strandat 1569.029 kb on - strandat 1569.061 kb on - strandat 1569.145 kb on + strand, within MPMX20_01500at 1569.145 kb on + strand, within MPMX20_01500at 1569.153 kb on - strand, within MPMX20_01500at 1569.153 kb on - strand, within MPMX20_01500at 1569.160 kb on + strand, within MPMX20_01500at 1569.292 kb on - strand, within MPMX20_01500at 1569.294 kb on + strand, within MPMX20_01500at 1569.422 kb on + strand, within MPMX20_01500at 1569.427 kb on + strand, within MPMX20_01500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
remove
1,566,597 + -2.2
1,566,599 + -2.1
1,566,599 + -3.4
1,566,602 + -2.6
1,566,607 - -2.0
1,566,607 - -1.7
1,566,639 + -1.6
1,566,639 + -2.4
1,566,647 + -3.3
1,566,655 - -0.8
1,566,683 - -0.7
1,566,836 + MPMX20_01497 0.21 -1.9
1,566,859 + MPMX20_01497 0.24 -2.0
1,566,870 + MPMX20_01497 0.25 -1.3
1,566,870 + MPMX20_01497 0.25 -3.5
1,566,870 + MPMX20_01497 0.25 -1.9
1,566,870 + MPMX20_01497 0.25 -1.4
1,566,870 + MPMX20_01497 0.25 -2.5
1,566,878 - MPMX20_01497 0.26 -1.2
1,566,991 + MPMX20_01497 0.38 -0.7
1,566,991 + MPMX20_01497 0.38 -1.2
1,566,999 - MPMX20_01497 0.38 -2.6
1,566,999 - MPMX20_01497 0.38 -3.1
1,567,140 + MPMX20_01497 0.53 -0.4
1,567,159 + MPMX20_01497 0.55 -2.0
1,567,159 + MPMX20_01497 0.55 -1.7
1,567,159 + MPMX20_01497 0.55 -0.4
1,567,167 - MPMX20_01497 0.56 -2.4
1,567,214 + MPMX20_01497 0.61 -2.4
1,567,247 + MPMX20_01497 0.64 -3.9
1,567,255 - MPMX20_01497 0.65 -3.9
1,567,255 - MPMX20_01497 0.65 -3.4
1,567,281 - MPMX20_01497 0.68 -2.2
1,567,284 + MPMX20_01497 0.68 -5.0
1,567,292 - MPMX20_01497 0.69 -2.6
1,567,315 - MPMX20_01497 0.72 -3.8
1,567,404 + MPMX20_01497 0.81 +1.6
1,567,412 - MPMX20_01497 0.82 -3.3
1,567,482 + MPMX20_01497 0.89 -2.5
1,567,490 - -1.3
1,567,605 - -3.9
1,567,710 - MPMX20_01498 0.15 -1.2
1,567,778 + MPMX20_01498 0.23 -1.6
1,567,786 - MPMX20_01498 0.24 -4.2
1,567,786 - MPMX20_01498 0.24 -3.7
1,567,916 + MPMX20_01498 0.39 -0.5
1,568,028 + MPMX20_01498 0.53 -3.5
1,568,052 + MPMX20_01498 0.56 -3.1
1,568,066 - MPMX20_01498 0.57 -1.9
1,568,159 - MPMX20_01498 0.68 -4.2
1,568,247 - MPMX20_01498 0.79 -3.2
1,568,259 + MPMX20_01498 0.80 -3.2
1,568,299 - MPMX20_01498 0.85 -3.6
1,568,304 + MPMX20_01498 0.85 -0.4
1,568,316 + MPMX20_01498 0.87 -3.7
1,568,316 + MPMX20_01498 0.87 -3.3
1,568,327 + MPMX20_01498 0.88 -2.3
1,568,327 + MPMX20_01498 0.88 -2.6
1,568,335 - MPMX20_01498 0.89 -2.5
1,568,337 + MPMX20_01498 0.89 -1.4
1,568,411 - -2.9
1,568,491 + +0.8
1,568,537 - -1.0
1,568,539 + +1.1
1,568,539 + +0.0
1,568,547 - MPMX20_01499 0.11 +0.0
1,568,549 + MPMX20_01499 0.12 -0.3
1,568,549 + MPMX20_01499 0.12 +0.9
1,568,557 - MPMX20_01499 0.14 +1.6
1,568,587 + MPMX20_01499 0.20 +0.3
1,568,587 + MPMX20_01499 0.20 +0.0
1,568,587 + MPMX20_01499 0.20 +1.6
1,568,587 + MPMX20_01499 0.20 +0.1
1,568,587 + MPMX20_01499 0.20 -2.0
1,568,587 + MPMX20_01499 0.20 +0.8
1,568,587 + MPMX20_01499 0.20 -1.6
1,568,587 + MPMX20_01499 0.20 +0.6
1,568,587 + MPMX20_01499 0.20 -0.1
1,568,587 + MPMX20_01499 0.20 -0.8
1,568,587 + MPMX20_01499 0.20 -3.1
1,568,595 - MPMX20_01499 0.22 -1.1
1,568,595 - MPMX20_01499 0.22 -2.0
1,568,595 - MPMX20_01499 0.22 -0.9
1,568,595 - MPMX20_01499 0.22 +0.1
1,568,595 - MPMX20_01499 0.22 -0.3
1,568,595 - MPMX20_01499 0.22 +0.2
1,568,595 - MPMX20_01499 0.22 -0.3
1,568,606 + MPMX20_01499 0.24 +0.4
1,568,612 + MPMX20_01499 0.25 +0.9
1,568,612 + MPMX20_01499 0.25 +0.3
1,568,614 + MPMX20_01499 0.26 +0.7
1,568,614 + MPMX20_01499 0.26 -1.4
1,568,614 + MPMX20_01499 0.26 +0.9
1,568,614 + MPMX20_01499 0.26 -0.5
1,568,614 + MPMX20_01499 0.26 +0.1
1,568,614 + MPMX20_01499 0.26 +0.0
1,568,615 - MPMX20_01499 0.26 +0.4
1,568,615 - MPMX20_01499 0.26 +0.5
1,568,622 - MPMX20_01499 0.27 +0.3
1,568,622 - MPMX20_01499 0.27 -0.4
1,568,622 - MPMX20_01499 0.27 +0.6
1,568,624 + MPMX20_01499 0.28 -0.7
1,568,653 + MPMX20_01499 0.34 -1.6
1,568,653 + MPMX20_01499 0.34 -0.3
1,568,661 - MPMX20_01499 0.35 -1.2
1,568,662 + MPMX20_01499 0.36 -1.0
1,568,663 - MPMX20_01499 0.36 +1.0
1,568,663 - MPMX20_01499 0.36 +0.8
1,568,668 + MPMX20_01499 0.37 +0.4
1,568,692 + MPMX20_01499 0.42 -0.7
1,568,692 + MPMX20_01499 0.42 -1.7
1,568,692 + MPMX20_01499 0.42 +0.2
1,568,692 + MPMX20_01499 0.42 +0.7
1,568,700 - MPMX20_01499 0.44 +0.5
1,568,700 - MPMX20_01499 0.44 -0.2
1,568,700 - MPMX20_01499 0.44 -0.4
1,568,700 - MPMX20_01499 0.44 -1.0
1,568,700 - MPMX20_01499 0.44 -0.7
1,568,700 - MPMX20_01499 0.44 +0.2
1,568,700 - MPMX20_01499 0.44 +0.5
1,568,825 - MPMX20_01499 0.70 +0.3
1,568,845 - MPMX20_01499 0.74 +0.2
1,568,876 - MPMX20_01499 0.81 -0.1
1,569,019 + -0.7
1,569,021 + -0.5
1,569,027 - -1.0
1,569,027 - -0.2
1,569,029 - +0.1
1,569,029 - +0.3
1,569,029 - +0.1
1,569,061 - -0.9
1,569,145 + MPMX20_01500 0.12 +0.5
1,569,145 + MPMX20_01500 0.12 -0.3
1,569,153 - MPMX20_01500 0.13 -2.4
1,569,153 - MPMX20_01500 0.13 +0.4
1,569,160 + MPMX20_01500 0.14 +0.6
1,569,292 - MPMX20_01500 0.25 +0.2
1,569,294 + MPMX20_01500 0.25 +0.0
1,569,422 + MPMX20_01500 0.37 +0.6
1,569,427 + MPMX20_01500 0.37 +0.2

Or see this region's nucleotide sequence