Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01496 and MPMX20_01497 are separated by 10 nucleotides MPMX20_01497 and MPMX20_01498 overlap by 4 nucleotides MPMX20_01498 and MPMX20_01499 are separated by 65 nucleotides MPMX20_01499 and MPMX20_01500 are separated by 40 nucleotides
MPMX20_01496: MPMX20_01496 - Spermidine/putrescine import ATP-binding protein PotA, at 1,565,488 to 1,566,621
_01496
MPMX20_01497: MPMX20_01497 - Putrescine transport system permease protein PotH, at 1,566,632 to 1,567,585
_01497
MPMX20_01498: MPMX20_01498 - Inner membrane ABC transporter permease protein YdcV, at 1,567,582 to 1,568,427
_01498
MPMX20_01499: MPMX20_01499 - Inner membrane protein YbjO, at 1,568,493 to 1,568,966
_01499
MPMX20_01500: MPMX20_01500 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 1,569,007 to 1,570,134
_01500
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1566.597 kb on + strand at 1566.599 kb on + strand at 1566.599 kb on + strand at 1566.602 kb on + strand at 1566.607 kb on - strand at 1566.607 kb on - strand at 1566.639 kb on + strand at 1566.639 kb on + strand at 1566.647 kb on + strand at 1566.655 kb on - strand at 1566.683 kb on - strand at 1566.836 kb on + strand, within MPMX20_01497 at 1566.859 kb on + strand, within MPMX20_01497 at 1566.870 kb on + strand, within MPMX20_01497 at 1566.870 kb on + strand, within MPMX20_01497 at 1566.870 kb on + strand, within MPMX20_01497 at 1566.870 kb on + strand, within MPMX20_01497 at 1566.870 kb on + strand, within MPMX20_01497 at 1566.878 kb on - strand, within MPMX20_01497 at 1566.991 kb on + strand, within MPMX20_01497 at 1566.991 kb on + strand, within MPMX20_01497 at 1566.999 kb on - strand, within MPMX20_01497 at 1566.999 kb on - strand, within MPMX20_01497 at 1567.140 kb on + strand, within MPMX20_01497 at 1567.159 kb on + strand, within MPMX20_01497 at 1567.159 kb on + strand, within MPMX20_01497 at 1567.159 kb on + strand, within MPMX20_01497 at 1567.167 kb on - strand, within MPMX20_01497 at 1567.214 kb on + strand, within MPMX20_01497 at 1567.247 kb on + strand, within MPMX20_01497 at 1567.255 kb on - strand, within MPMX20_01497 at 1567.255 kb on - strand, within MPMX20_01497 at 1567.281 kb on - strand, within MPMX20_01497 at 1567.284 kb on + strand, within MPMX20_01497 at 1567.292 kb on - strand, within MPMX20_01497 at 1567.315 kb on - strand, within MPMX20_01497 at 1567.404 kb on + strand, within MPMX20_01497 at 1567.412 kb on - strand, within MPMX20_01497 at 1567.482 kb on + strand, within MPMX20_01497 at 1567.490 kb on - strand at 1567.605 kb on - strand at 1567.710 kb on - strand, within MPMX20_01498 at 1567.778 kb on + strand, within MPMX20_01498 at 1567.786 kb on - strand, within MPMX20_01498 at 1567.786 kb on - strand, within MPMX20_01498 at 1567.916 kb on + strand, within MPMX20_01498 at 1568.028 kb on + strand, within MPMX20_01498 at 1568.052 kb on + strand, within MPMX20_01498 at 1568.066 kb on - strand, within MPMX20_01498 at 1568.159 kb on - strand, within MPMX20_01498 at 1568.247 kb on - strand, within MPMX20_01498 at 1568.259 kb on + strand, within MPMX20_01498 at 1568.299 kb on - strand, within MPMX20_01498 at 1568.304 kb on + strand, within MPMX20_01498 at 1568.316 kb on + strand, within MPMX20_01498 at 1568.316 kb on + strand, within MPMX20_01498 at 1568.327 kb on + strand, within MPMX20_01498 at 1568.327 kb on + strand, within MPMX20_01498 at 1568.335 kb on - strand, within MPMX20_01498 at 1568.337 kb on + strand, within MPMX20_01498 at 1568.411 kb on - strand at 1568.491 kb on + strand at 1568.537 kb on - strand at 1568.539 kb on + strand at 1568.539 kb on + strand at 1568.547 kb on - strand, within MPMX20_01499 at 1568.549 kb on + strand, within MPMX20_01499 at 1568.549 kb on + strand, within MPMX20_01499 at 1568.557 kb on - strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.587 kb on + strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.595 kb on - strand, within MPMX20_01499 at 1568.606 kb on + strand, within MPMX20_01499 at 1568.612 kb on + strand, within MPMX20_01499 at 1568.612 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.614 kb on + strand, within MPMX20_01499 at 1568.615 kb on - strand, within MPMX20_01499 at 1568.615 kb on - strand, within MPMX20_01499 at 1568.622 kb on - strand, within MPMX20_01499 at 1568.622 kb on - strand, within MPMX20_01499 at 1568.622 kb on - strand, within MPMX20_01499 at 1568.624 kb on + strand, within MPMX20_01499 at 1568.653 kb on + strand, within MPMX20_01499 at 1568.653 kb on + strand, within MPMX20_01499 at 1568.661 kb on - strand, within MPMX20_01499 at 1568.662 kb on + strand, within MPMX20_01499 at 1568.663 kb on - strand, within MPMX20_01499 at 1568.663 kb on - strand, within MPMX20_01499 at 1568.668 kb on + strand, within MPMX20_01499 at 1568.692 kb on + strand, within MPMX20_01499 at 1568.692 kb on + strand, within MPMX20_01499 at 1568.692 kb on + strand, within MPMX20_01499 at 1568.692 kb on + strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.700 kb on - strand, within MPMX20_01499 at 1568.825 kb on - strand, within MPMX20_01499 at 1568.845 kb on - strand, within MPMX20_01499 at 1568.876 kb on - strand, within MPMX20_01499 at 1569.019 kb on + strand at 1569.021 kb on + strand at 1569.027 kb on - strand at 1569.027 kb on - strand at 1569.029 kb on - strand at 1569.029 kb on - strand at 1569.029 kb on - strand at 1569.061 kb on - strand at 1569.145 kb on + strand, within MPMX20_01500 at 1569.145 kb on + strand, within MPMX20_01500 at 1569.153 kb on - strand, within MPMX20_01500 at 1569.153 kb on - strand, within MPMX20_01500 at 1569.160 kb on + strand, within MPMX20_01500 at 1569.292 kb on - strand, within MPMX20_01500 at 1569.294 kb on + strand, within MPMX20_01500 at 1569.422 kb on + strand, within MPMX20_01500 at 1569.427 kb on + strand, within MPMX20_01500
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 1,566,597 + -2.2 1,566,599 + -2.1 1,566,599 + -3.4 1,566,602 + -2.6 1,566,607 - -2.0 1,566,607 - -1.7 1,566,639 + -1.6 1,566,639 + -2.4 1,566,647 + -3.3 1,566,655 - -0.8 1,566,683 - -0.7 1,566,836 + MPMX20_01497 0.21 -1.9 1,566,859 + MPMX20_01497 0.24 -2.0 1,566,870 + MPMX20_01497 0.25 -1.3 1,566,870 + MPMX20_01497 0.25 -3.5 1,566,870 + MPMX20_01497 0.25 -1.9 1,566,870 + MPMX20_01497 0.25 -1.4 1,566,870 + MPMX20_01497 0.25 -2.5 1,566,878 - MPMX20_01497 0.26 -1.2 1,566,991 + MPMX20_01497 0.38 -0.7 1,566,991 + MPMX20_01497 0.38 -1.2 1,566,999 - MPMX20_01497 0.38 -2.6 1,566,999 - MPMX20_01497 0.38 -3.1 1,567,140 + MPMX20_01497 0.53 -0.4 1,567,159 + MPMX20_01497 0.55 -2.0 1,567,159 + MPMX20_01497 0.55 -1.7 1,567,159 + MPMX20_01497 0.55 -0.4 1,567,167 - MPMX20_01497 0.56 -2.4 1,567,214 + MPMX20_01497 0.61 -2.4 1,567,247 + MPMX20_01497 0.64 -3.9 1,567,255 - MPMX20_01497 0.65 -3.9 1,567,255 - MPMX20_01497 0.65 -3.4 1,567,281 - MPMX20_01497 0.68 -2.2 1,567,284 + MPMX20_01497 0.68 -5.0 1,567,292 - MPMX20_01497 0.69 -2.6 1,567,315 - MPMX20_01497 0.72 -3.8 1,567,404 + MPMX20_01497 0.81 +1.6 1,567,412 - MPMX20_01497 0.82 -3.3 1,567,482 + MPMX20_01497 0.89 -2.5 1,567,490 - -1.3 1,567,605 - -3.9 1,567,710 - MPMX20_01498 0.15 -1.2 1,567,778 + MPMX20_01498 0.23 -1.6 1,567,786 - MPMX20_01498 0.24 -4.2 1,567,786 - MPMX20_01498 0.24 -3.7 1,567,916 + MPMX20_01498 0.39 -0.5 1,568,028 + MPMX20_01498 0.53 -3.5 1,568,052 + MPMX20_01498 0.56 -3.1 1,568,066 - MPMX20_01498 0.57 -1.9 1,568,159 - MPMX20_01498 0.68 -4.2 1,568,247 - MPMX20_01498 0.79 -3.2 1,568,259 + MPMX20_01498 0.80 -3.2 1,568,299 - MPMX20_01498 0.85 -3.6 1,568,304 + MPMX20_01498 0.85 -0.4 1,568,316 + MPMX20_01498 0.87 -3.7 1,568,316 + MPMX20_01498 0.87 -3.3 1,568,327 + MPMX20_01498 0.88 -2.3 1,568,327 + MPMX20_01498 0.88 -2.6 1,568,335 - MPMX20_01498 0.89 -2.5 1,568,337 + MPMX20_01498 0.89 -1.4 1,568,411 - -2.9 1,568,491 + +0.8 1,568,537 - -1.0 1,568,539 + +1.1 1,568,539 + +0.0 1,568,547 - MPMX20_01499 0.11 +0.0 1,568,549 + MPMX20_01499 0.12 -0.3 1,568,549 + MPMX20_01499 0.12 +0.9 1,568,557 - MPMX20_01499 0.14 +1.6 1,568,587 + MPMX20_01499 0.20 +0.3 1,568,587 + MPMX20_01499 0.20 +0.0 1,568,587 + MPMX20_01499 0.20 +1.6 1,568,587 + MPMX20_01499 0.20 +0.1 1,568,587 + MPMX20_01499 0.20 -2.0 1,568,587 + MPMX20_01499 0.20 +0.8 1,568,587 + MPMX20_01499 0.20 -1.6 1,568,587 + MPMX20_01499 0.20 +0.6 1,568,587 + MPMX20_01499 0.20 -0.1 1,568,587 + MPMX20_01499 0.20 -0.8 1,568,587 + MPMX20_01499 0.20 -3.1 1,568,595 - MPMX20_01499 0.22 -1.1 1,568,595 - MPMX20_01499 0.22 -2.0 1,568,595 - MPMX20_01499 0.22 -0.9 1,568,595 - MPMX20_01499 0.22 +0.1 1,568,595 - MPMX20_01499 0.22 -0.3 1,568,595 - MPMX20_01499 0.22 +0.2 1,568,595 - MPMX20_01499 0.22 -0.3 1,568,606 + MPMX20_01499 0.24 +0.4 1,568,612 + MPMX20_01499 0.25 +0.9 1,568,612 + MPMX20_01499 0.25 +0.3 1,568,614 + MPMX20_01499 0.26 +0.7 1,568,614 + MPMX20_01499 0.26 -1.4 1,568,614 + MPMX20_01499 0.26 +0.9 1,568,614 + MPMX20_01499 0.26 -0.5 1,568,614 + MPMX20_01499 0.26 +0.1 1,568,614 + MPMX20_01499 0.26 +0.0 1,568,615 - MPMX20_01499 0.26 +0.4 1,568,615 - MPMX20_01499 0.26 +0.5 1,568,622 - MPMX20_01499 0.27 +0.3 1,568,622 - MPMX20_01499 0.27 -0.4 1,568,622 - MPMX20_01499 0.27 +0.6 1,568,624 + MPMX20_01499 0.28 -0.7 1,568,653 + MPMX20_01499 0.34 -1.6 1,568,653 + MPMX20_01499 0.34 -0.3 1,568,661 - MPMX20_01499 0.35 -1.2 1,568,662 + MPMX20_01499 0.36 -1.0 1,568,663 - MPMX20_01499 0.36 +1.0 1,568,663 - MPMX20_01499 0.36 +0.8 1,568,668 + MPMX20_01499 0.37 +0.4 1,568,692 + MPMX20_01499 0.42 -0.7 1,568,692 + MPMX20_01499 0.42 -1.7 1,568,692 + MPMX20_01499 0.42 +0.2 1,568,692 + MPMX20_01499 0.42 +0.7 1,568,700 - MPMX20_01499 0.44 +0.5 1,568,700 - MPMX20_01499 0.44 -0.2 1,568,700 - MPMX20_01499 0.44 -0.4 1,568,700 - MPMX20_01499 0.44 -1.0 1,568,700 - MPMX20_01499 0.44 -0.7 1,568,700 - MPMX20_01499 0.44 +0.2 1,568,700 - MPMX20_01499 0.44 +0.5 1,568,825 - MPMX20_01499 0.70 +0.3 1,568,845 - MPMX20_01499 0.74 +0.2 1,568,876 - MPMX20_01499 0.81 -0.1 1,569,019 + -0.7 1,569,021 + -0.5 1,569,027 - -1.0 1,569,027 - -0.2 1,569,029 - +0.1 1,569,029 - +0.3 1,569,029 - +0.1 1,569,061 - -0.9 1,569,145 + MPMX20_01500 0.12 +0.5 1,569,145 + MPMX20_01500 0.12 -0.3 1,569,153 - MPMX20_01500 0.13 -2.4 1,569,153 - MPMX20_01500 0.13 +0.4 1,569,160 + MPMX20_01500 0.14 +0.6 1,569,292 - MPMX20_01500 0.25 +0.2 1,569,294 + MPMX20_01500 0.25 +0.0 1,569,422 + MPMX20_01500 0.37 +0.6 1,569,427 + MPMX20_01500 0.37 +0.2
Or see this region's nucleotide sequence