Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04273

Experiment: Gelatin (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04271 and MPMX20_04272 are separated by 145 nucleotidesMPMX20_04272 and MPMX20_04273 are separated by 100 nucleotidesMPMX20_04273 and MPMX20_04274 overlap by 8 nucleotidesMPMX20_04274 and MPMX20_04275 overlap by 8 nucleotides MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518 _04271 MPMX20_04272: MPMX20_04272 - hypothetical protein, at 4,455,664 to 4,455,834 _04272 MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939 _04273 MPMX20_04274: MPMX20_04274 - Phosphoglycolate phosphatase, at 4,456,932 to 4,457,693 _04274 MPMX20_04275: MPMX20_04275 - Ribulose-phosphate 3-epimerase, at 4,457,686 to 4,458,363 _04275 Position (kb) 4455 4456 4457Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4454.971 kb on - strand, within MPMX20_04271at 4454.989 kb on - strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.038 kb on + strand, within MPMX20_04271at 4455.046 kb on - strand, within MPMX20_04271at 4455.149 kb on - strand, within MPMX20_04271at 4455.149 kb on - strand, within MPMX20_04271at 4455.190 kb on - strand, within MPMX20_04271at 4455.247 kb on + strand, within MPMX20_04271at 4455.247 kb on + strand, within MPMX20_04271at 4455.292 kb on + strand, within MPMX20_04271at 4455.292 kb on + strand, within MPMX20_04271at 4455.334 kb on - strand, within MPMX20_04271at 4455.337 kb on + strand, within MPMX20_04271at 4455.337 kb on + strand, within MPMX20_04271at 4455.347 kb on + strand, within MPMX20_04271at 4455.355 kb on - strand, within MPMX20_04271at 4455.355 kb on - strand, within MPMX20_04271at 4455.382 kb on + strandat 4455.382 kb on + strandat 4455.425 kb on - strandat 4455.449 kb on - strandat 4455.483 kb on - strandat 4455.483 kb on - strandat 4455.533 kb on + strandat 4455.688 kb on + strand, within MPMX20_04272at 4455.766 kb on - strand, within MPMX20_04272at 4455.835 kb on + strandat 4455.917 kb on + strandat 4455.932 kb on + strandat 4455.940 kb on - strandat 4455.972 kb on + strandat 4456.076 kb on - strand, within MPMX20_04273at 4456.091 kb on + strand, within MPMX20_04273at 4456.116 kb on + strand, within MPMX20_04273at 4456.156 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.177 kb on - strand, within MPMX20_04273at 4456.204 kb on + strand, within MPMX20_04273at 4456.218 kb on + strand, within MPMX20_04273at 4456.223 kb on + strand, within MPMX20_04273at 4456.362 kb on - strand, within MPMX20_04273at 4456.375 kb on - strand, within MPMX20_04273at 4456.420 kb on - strand, within MPMX20_04273at 4456.431 kb on + strand, within MPMX20_04273at 4456.431 kb on + strand, within MPMX20_04273at 4456.439 kb on - strand, within MPMX20_04273at 4456.474 kb on + strand, within MPMX20_04273at 4456.526 kb on - strand, within MPMX20_04273at 4456.526 kb on - strand, within MPMX20_04273at 4456.544 kb on + strand, within MPMX20_04273at 4456.544 kb on + strand, within MPMX20_04273at 4456.552 kb on - strand, within MPMX20_04273at 4456.562 kb on + strand, within MPMX20_04273at 4456.572 kb on + strand, within MPMX20_04273at 4456.580 kb on - strand, within MPMX20_04273at 4456.652 kb on + strand, within MPMX20_04273at 4456.660 kb on - strand, within MPMX20_04273at 4456.672 kb on - strand, within MPMX20_04273at 4456.752 kb on - strand, within MPMX20_04273at 4456.772 kb on - strand, within MPMX20_04273at 4456.872 kb on + strandat 4456.872 kb on + strandat 4456.872 kb on + strandat 4456.880 kb on - strandat 4456.880 kb on - strandat 4456.892 kb on + strandat 4456.907 kb on - strandat 4456.924 kb on - strandat 4456.964 kb on + strandat 4457.027 kb on + strand, within MPMX20_04274at 4457.122 kb on + strand, within MPMX20_04274at 4457.127 kb on + strand, within MPMX20_04274at 4457.177 kb on + strand, within MPMX20_04274at 4457.196 kb on + strand, within MPMX20_04274at 4457.252 kb on - strand, within MPMX20_04274at 4457.335 kb on - strand, within MPMX20_04274at 4457.359 kb on + strand, within MPMX20_04274at 4457.418 kb on - strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.457 kb on + strand, within MPMX20_04274at 4457.458 kb on + strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.466 kb on - strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.582 kb on + strand, within MPMX20_04274at 4457.590 kb on + strand, within MPMX20_04274at 4457.590 kb on - strand, within MPMX20_04274at 4457.590 kb on - strand, within MPMX20_04274at 4457.606 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.616 kb on + strand, within MPMX20_04274at 4457.624 kb on - strandat 4457.634 kb on + strandat 4457.693 kb on + strandat 4457.760 kb on - strand, within MPMX20_04275at 4457.784 kb on - strand, within MPMX20_04275at 4457.851 kb on + strand, within MPMX20_04275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
remove
4,454,971 - MPMX20_04271 0.60 +0.4
4,454,989 - MPMX20_04271 0.61 +0.6
4,455,038 + MPMX20_04271 0.65 +1.2
4,455,038 + MPMX20_04271 0.65 -0.2
4,455,038 + MPMX20_04271 0.65 -3.2
4,455,046 - MPMX20_04271 0.66 +1.2
4,455,149 - MPMX20_04271 0.73 -2.4
4,455,149 - MPMX20_04271 0.73 +0.5
4,455,190 - MPMX20_04271 0.76 +0.6
4,455,247 + MPMX20_04271 0.80 -0.6
4,455,247 + MPMX20_04271 0.80 -1.7
4,455,292 + MPMX20_04271 0.83 +0.4
4,455,292 + MPMX20_04271 0.83 -0.3
4,455,334 - MPMX20_04271 0.87 +0.3
4,455,337 + MPMX20_04271 0.87 -2.5
4,455,337 + MPMX20_04271 0.87 -0.0
4,455,347 + MPMX20_04271 0.87 -2.2
4,455,355 - MPMX20_04271 0.88 -0.0
4,455,355 - MPMX20_04271 0.88 -1.1
4,455,382 + +0.6
4,455,382 + -3.1
4,455,425 - +2.4
4,455,449 - -1.5
4,455,483 - +0.1
4,455,483 - -0.6
4,455,533 + +0.8
4,455,688 + MPMX20_04272 0.14 -1.5
4,455,766 - MPMX20_04272 0.60 -2.5
4,455,835 + +0.2
4,455,917 + +2.3
4,455,932 + -3.2
4,455,940 - -0.5
4,455,972 + -0.3
4,456,076 - MPMX20_04273 0.14 -0.1
4,456,091 + MPMX20_04273 0.16 -0.3
4,456,116 + MPMX20_04273 0.18 +1.6
4,456,156 - MPMX20_04273 0.22 -2.4
4,456,177 - MPMX20_04273 0.24 +1.4
4,456,177 - MPMX20_04273 0.24 -0.6
4,456,177 - MPMX20_04273 0.24 -1.5
4,456,204 + MPMX20_04273 0.27 -1.0
4,456,218 + MPMX20_04273 0.28 +1.5
4,456,223 + MPMX20_04273 0.29 +0.4
4,456,362 - MPMX20_04273 0.42 -0.6
4,456,375 - MPMX20_04273 0.44 +0.7
4,456,420 - MPMX20_04273 0.48 -0.4
4,456,431 + MPMX20_04273 0.49 -0.9
4,456,431 + MPMX20_04273 0.49 +1.0
4,456,439 - MPMX20_04273 0.50 +1.3
4,456,474 + MPMX20_04273 0.54 -0.1
4,456,526 - MPMX20_04273 0.59 +0.4
4,456,526 - MPMX20_04273 0.59 -1.6
4,456,544 + MPMX20_04273 0.61 +1.6
4,456,544 + MPMX20_04273 0.61 +0.4
4,456,552 - MPMX20_04273 0.61 +0.2
4,456,562 + MPMX20_04273 0.62 -0.7
4,456,572 + MPMX20_04273 0.63 +0.7
4,456,580 - MPMX20_04273 0.64 -3.5
4,456,652 + MPMX20_04273 0.71 -2.2
4,456,660 - MPMX20_04273 0.72 -0.9
4,456,672 - MPMX20_04273 0.73 -0.3
4,456,752 - MPMX20_04273 0.81 +0.9
4,456,772 - MPMX20_04273 0.83 -1.3
4,456,872 + +1.0
4,456,872 + -0.1
4,456,872 + -0.6
4,456,880 - -0.5
4,456,880 - +0.8
4,456,892 + +1.1
4,456,907 - +1.0
4,456,924 - -0.3
4,456,964 + +0.6
4,457,027 + MPMX20_04274 0.12 -1.1
4,457,122 + MPMX20_04274 0.25 -0.9
4,457,127 + MPMX20_04274 0.26 -1.1
4,457,177 + MPMX20_04274 0.32 -0.6
4,457,196 + MPMX20_04274 0.35 +1.7
4,457,252 - MPMX20_04274 0.42 +0.4
4,457,335 - MPMX20_04274 0.53 -0.8
4,457,359 + MPMX20_04274 0.56 -0.3
4,457,418 - MPMX20_04274 0.64 -0.6
4,457,457 + MPMX20_04274 0.69 -0.5
4,457,457 + MPMX20_04274 0.69 -0.5
4,457,457 + MPMX20_04274 0.69 -0.7
4,457,458 + MPMX20_04274 0.69 +0.1
4,457,466 - MPMX20_04274 0.70 -1.8
4,457,466 - MPMX20_04274 0.70 -2.6
4,457,466 - MPMX20_04274 0.70 -2.3
4,457,582 + MPMX20_04274 0.85 -1.2
4,457,582 + MPMX20_04274 0.85 -0.4
4,457,582 + MPMX20_04274 0.85 +0.1
4,457,590 + MPMX20_04274 0.86 +2.1
4,457,590 - MPMX20_04274 0.86 -3.2
4,457,590 - MPMX20_04274 0.86 -0.9
4,457,606 + MPMX20_04274 0.88 -1.3
4,457,616 + MPMX20_04274 0.90 +0.1
4,457,616 + MPMX20_04274 0.90 +0.5
4,457,616 + MPMX20_04274 0.90 +0.6
4,457,624 - -2.4
4,457,634 + -3.9
4,457,693 + +1.6
4,457,760 - MPMX20_04275 0.11 -0.6
4,457,784 - MPMX20_04275 0.14 -0.9
4,457,851 + MPMX20_04275 0.24 +2.5

Or see this region's nucleotide sequence