Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00716

Experiment: Carnitine Hydrochloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00715 and MPMX20_00716 are separated by 262 nucleotidesMPMX20_00716 and MPMX20_00717 are separated by 111 nucleotidesMPMX20_00717 and MPMX20_00718 are separated by 122 nucleotides MPMX20_00715: MPMX20_00715 - Amino-acid carrier protein AlsT, at 737,206 to 738,636 _00715 MPMX20_00716: MPMX20_00716 - Transaldolase B, at 738,899 to 739,852 _00716 MPMX20_00717: MPMX20_00717 - Molybdopterin adenylyltransferase, at 739,964 to 740,551 _00717 MPMX20_00718: MPMX20_00718 - Proline/betaine transporter, at 740,674 to 741,996 _00718 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 737.987 kb on - strand, within MPMX20_00715at 737.987 kb on - strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.990 kb on + strand, within MPMX20_00715at 737.995 kb on + strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 737.998 kb on - strand, within MPMX20_00715at 738.042 kb on + strand, within MPMX20_00715at 738.049 kb on - strand, within MPMX20_00715at 738.066 kb on + strand, within MPMX20_00715at 738.079 kb on + strand, within MPMX20_00715at 738.120 kb on - strand, within MPMX20_00715at 738.120 kb on - strand, within MPMX20_00715at 738.129 kb on + strand, within MPMX20_00715at 738.132 kb on - strand, within MPMX20_00715at 738.176 kb on + strand, within MPMX20_00715at 738.181 kb on - strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.222 kb on + strand, within MPMX20_00715at 738.230 kb on - strand, within MPMX20_00715at 738.241 kb on + strand, within MPMX20_00715at 738.249 kb on - strand, within MPMX20_00715at 738.249 kb on - strand, within MPMX20_00715at 738.300 kb on - strand, within MPMX20_00715at 738.307 kb on + strand, within MPMX20_00715at 738.320 kb on - strand, within MPMX20_00715at 738.334 kb on + strand, within MPMX20_00715at 738.391 kb on - strand, within MPMX20_00715at 738.393 kb on + strand, within MPMX20_00715at 738.413 kb on - strand, within MPMX20_00715at 738.418 kb on + strand, within MPMX20_00715at 738.424 kb on - strand, within MPMX20_00715at 738.429 kb on + strand, within MPMX20_00715at 738.461 kb on - strand, within MPMX20_00715at 738.474 kb on + strand, within MPMX20_00715at 738.480 kb on + strand, within MPMX20_00715at 738.482 kb on - strand, within MPMX20_00715at 738.531 kb on + strandat 738.531 kb on + strandat 738.552 kb on - strandat 738.552 kb on - strandat 738.579 kb on + strandat 738.579 kb on + strandat 738.585 kb on + strandat 738.596 kb on + strandat 738.596 kb on + strandat 738.611 kb on - strandat 738.650 kb on - strandat 738.740 kb on + strandat 738.755 kb on - strandat 738.763 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.786 kb on + strandat 738.789 kb on - strandat 738.863 kb on + strandat 738.926 kb on - strandat 738.926 kb on - strandat 738.928 kb on + strandat 738.936 kb on - strandat 738.946 kb on - strandat 738.984 kb on - strandat 738.997 kb on + strand, within MPMX20_00716at 738.997 kb on + strand, within MPMX20_00716at 739.005 kb on - strand, within MPMX20_00716at 739.015 kb on + strand, within MPMX20_00716at 739.079 kb on + strand, within MPMX20_00716at 739.220 kb on - strand, within MPMX20_00716at 739.228 kb on - strand, within MPMX20_00716at 739.353 kb on + strand, within MPMX20_00716at 739.361 kb on - strand, within MPMX20_00716at 739.387 kb on + strand, within MPMX20_00716at 739.442 kb on + strand, within MPMX20_00716at 739.452 kb on + strand, within MPMX20_00716at 739.452 kb on + strand, within MPMX20_00716at 739.562 kb on - strand, within MPMX20_00716at 739.576 kb on - strand, within MPMX20_00716at 739.687 kb on + strand, within MPMX20_00716at 739.695 kb on - strand, within MPMX20_00716at 739.712 kb on + strand, within MPMX20_00716at 739.777 kb on - strandat 739.801 kb on - strandat 739.846 kb on + strandat 739.909 kb on - strandat 739.956 kb on + strandat 739.971 kb on + strandat 739.990 kb on - strandat 739.991 kb on - strandat 740.026 kb on + strand, within MPMX20_00717at 740.034 kb on - strand, within MPMX20_00717at 740.034 kb on - strand, within MPMX20_00717at 740.087 kb on + strand, within MPMX20_00717at 740.087 kb on + strand, within MPMX20_00717at 740.173 kb on - strand, within MPMX20_00717at 740.186 kb on - strand, within MPMX20_00717at 740.196 kb on - strand, within MPMX20_00717at 740.196 kb on - strand, within MPMX20_00717at 740.273 kb on + strand, within MPMX20_00717at 740.282 kb on + strand, within MPMX20_00717at 740.291 kb on - strand, within MPMX20_00717at 740.328 kb on - strand, within MPMX20_00717at 740.368 kb on + strand, within MPMX20_00717at 740.462 kb on - strand, within MPMX20_00717at 740.480 kb on + strand, within MPMX20_00717at 740.600 kb on - strandat 740.661 kb on - strandat 740.685 kb on + strandat 740.685 kb on + strandat 740.685 kb on + strandat 740.719 kb on - strandat 740.731 kb on + strandat 740.731 kb on + strandat 740.731 kb on + strandat 740.739 kb on - strandat 740.739 kb on - strandat 740.807 kb on - strand, within MPMX20_00718at 740.818 kb on + strand, within MPMX20_00718

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
remove
737,987 - MPMX20_00715 0.55 +0.2
737,987 - MPMX20_00715 0.55 +0.6
737,990 + MPMX20_00715 0.55 -1.5
737,990 + MPMX20_00715 0.55 +0.8
737,990 + MPMX20_00715 0.55 -0.4
737,995 + MPMX20_00715 0.55 -2.3
737,998 - MPMX20_00715 0.55 +0.2
737,998 - MPMX20_00715 0.55 +0.9
737,998 - MPMX20_00715 0.55 +1.2
737,998 - MPMX20_00715 0.55 -2.7
738,042 + MPMX20_00715 0.58 -1.4
738,049 - MPMX20_00715 0.59 -0.8
738,066 + MPMX20_00715 0.60 +0.9
738,079 + MPMX20_00715 0.61 -1.3
738,120 - MPMX20_00715 0.64 -3.5
738,120 - MPMX20_00715 0.64 -1.9
738,129 + MPMX20_00715 0.65 +0.1
738,132 - MPMX20_00715 0.65 +1.0
738,176 + MPMX20_00715 0.68 -0.2
738,181 - MPMX20_00715 0.68 -0.4
738,222 + MPMX20_00715 0.71 -1.3
738,222 + MPMX20_00715 0.71 -2.9
738,222 + MPMX20_00715 0.71 -2.0
738,230 - MPMX20_00715 0.72 -1.8
738,241 + MPMX20_00715 0.72 +2.1
738,249 - MPMX20_00715 0.73 -0.0
738,249 - MPMX20_00715 0.73 -0.1
738,300 - MPMX20_00715 0.76 -2.1
738,307 + MPMX20_00715 0.77 +0.2
738,320 - MPMX20_00715 0.78 +0.3
738,334 + MPMX20_00715 0.79 +0.5
738,391 - MPMX20_00715 0.83 -0.9
738,393 + MPMX20_00715 0.83 -0.9
738,413 - MPMX20_00715 0.84 -0.8
738,418 + MPMX20_00715 0.85 +0.4
738,424 - MPMX20_00715 0.85 +0.6
738,429 + MPMX20_00715 0.85 -1.9
738,461 - MPMX20_00715 0.88 +0.4
738,474 + MPMX20_00715 0.89 +0.9
738,480 + MPMX20_00715 0.89 -0.6
738,482 - MPMX20_00715 0.89 +1.1
738,531 + -0.5
738,531 + +0.2
738,552 - +0.1
738,552 - -2.4
738,579 + -0.5
738,579 + -0.4
738,585 + -0.1
738,596 + +1.0
738,596 + -0.7
738,611 - -2.9
738,650 - -0.8
738,740 + +0.2
738,755 - +1.1
738,763 + +1.8
738,786 + -0.4
738,786 + +0.3
738,786 + +0.7
738,786 + -2.7
738,789 - -0.1
738,863 + -1.2
738,926 - -2.0
738,926 - -0.7
738,928 + -1.1
738,936 - -1.6
738,946 - -1.2
738,984 - -0.5
738,997 + MPMX20_00716 0.10 -0.8
738,997 + MPMX20_00716 0.10 -0.8
739,005 - MPMX20_00716 0.11 -2.0
739,015 + MPMX20_00716 0.12 -0.8
739,079 + MPMX20_00716 0.19 +0.9
739,220 - MPMX20_00716 0.34 +0.4
739,228 - MPMX20_00716 0.34 -0.3
739,353 + MPMX20_00716 0.48 -0.9
739,361 - MPMX20_00716 0.48 -1.5
739,387 + MPMX20_00716 0.51 -0.0
739,442 + MPMX20_00716 0.57 +2.2
739,452 + MPMX20_00716 0.58 -1.8
739,452 + MPMX20_00716 0.58 -0.2
739,562 - MPMX20_00716 0.69 -0.9
739,576 - MPMX20_00716 0.71 +0.2
739,687 + MPMX20_00716 0.83 +0.6
739,695 - MPMX20_00716 0.83 -0.9
739,712 + MPMX20_00716 0.85 -0.5
739,777 - +1.2
739,801 - -2.0
739,846 + +1.4
739,909 - -1.1
739,956 + -1.1
739,971 + +0.2
739,990 - -0.8
739,991 - +1.2
740,026 + MPMX20_00717 0.11 -2.5
740,034 - MPMX20_00717 0.12 -3.1
740,034 - MPMX20_00717 0.12 -1.8
740,087 + MPMX20_00717 0.21 -0.5
740,087 + MPMX20_00717 0.21 -0.2
740,173 - MPMX20_00717 0.36 -0.4
740,186 - MPMX20_00717 0.38 -0.2
740,196 - MPMX20_00717 0.39 -0.3
740,196 - MPMX20_00717 0.39 -3.4
740,273 + MPMX20_00717 0.53 +0.1
740,282 + MPMX20_00717 0.54 -1.6
740,291 - MPMX20_00717 0.56 -2.2
740,328 - MPMX20_00717 0.62 +1.2
740,368 + MPMX20_00717 0.69 -2.9
740,462 - MPMX20_00717 0.85 +1.8
740,480 + MPMX20_00717 0.88 -3.3
740,600 - -2.1
740,661 - -0.4
740,685 + +0.6
740,685 + -2.8
740,685 + -2.6
740,719 - -2.5
740,731 + +0.4
740,731 + +0.5
740,731 + -1.5
740,739 - +0.3
740,739 - +0.5
740,807 - MPMX20_00718 0.10 -0.9
740,818 + MPMX20_00718 0.11 -2.5

Or see this region's nucleotide sequence