Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04570

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04569 and MPMX20_04570 are separated by 17 nucleotidesMPMX20_04570 and MPMX20_04571 are separated by 104 nucleotidesMPMX20_04571 and MPMX20_04572 overlap by 1 nucleotides MPMX20_04569: MPMX20_04569 - HTH-type transcriptional regulator RafR, at 4,782,285 to 4,783,280 _04569 MPMX20_04570: MPMX20_04570 - HTH-type transcriptional regulator SutR, at 4,783,298 to 4,783,846 _04570 MPMX20_04571: MPMX20_04571 - hypothetical protein, at 4,783,951 to 4,784,610 _04571 MPMX20_04572: MPMX20_04572 - hypothetical protein, at 4,784,610 to 4,784,933 _04572 Position (kb) 4783 4784Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4782.309 kb on - strandat 4782.326 kb on + strandat 4782.333 kb on - strandat 4782.439 kb on + strand, within MPMX20_04569at 4782.457 kb on - strand, within MPMX20_04569at 4782.495 kb on + strand, within MPMX20_04569at 4782.522 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.541 kb on + strand, within MPMX20_04569at 4782.551 kb on + strand, within MPMX20_04569at 4782.661 kb on + strand, within MPMX20_04569at 4782.698 kb on + strand, within MPMX20_04569at 4782.731 kb on + strand, within MPMX20_04569at 4782.812 kb on + strand, within MPMX20_04569at 4782.833 kb on + strand, within MPMX20_04569at 4782.837 kb on - strand, within MPMX20_04569at 4782.876 kb on - strand, within MPMX20_04569at 4782.936 kb on + strand, within MPMX20_04569at 4782.944 kb on - strand, within MPMX20_04569at 4782.944 kb on - strand, within MPMX20_04569at 4782.958 kb on - strand, within MPMX20_04569at 4783.059 kb on + strand, within MPMX20_04569at 4783.078 kb on - strand, within MPMX20_04569at 4783.094 kb on + strand, within MPMX20_04569at 4783.146 kb on - strand, within MPMX20_04569at 4783.241 kb on + strandat 4783.247 kb on + strandat 4783.313 kb on + strandat 4783.364 kb on + strand, within MPMX20_04570at 4783.393 kb on + strand, within MPMX20_04570at 4783.429 kb on + strand, within MPMX20_04570at 4783.431 kb on + strand, within MPMX20_04570at 4783.431 kb on + strand, within MPMX20_04570at 4783.431 kb on + strand, within MPMX20_04570at 4783.431 kb on + strand, within MPMX20_04570at 4783.431 kb on + strand, within MPMX20_04570at 4783.439 kb on - strand, within MPMX20_04570at 4783.439 kb on - strand, within MPMX20_04570at 4783.439 kb on - strand, within MPMX20_04570at 4783.459 kb on + strand, within MPMX20_04570at 4783.459 kb on + strand, within MPMX20_04570at 4783.469 kb on + strand, within MPMX20_04570at 4783.477 kb on - strand, within MPMX20_04570at 4783.477 kb on - strand, within MPMX20_04570at 4783.526 kb on - strand, within MPMX20_04570at 4783.572 kb on + strand, within MPMX20_04570at 4783.574 kb on - strand, within MPMX20_04570at 4783.627 kb on - strand, within MPMX20_04570at 4783.629 kb on - strand, within MPMX20_04570at 4783.672 kb on + strand, within MPMX20_04570at 4783.675 kb on - strand, within MPMX20_04570at 4783.680 kb on - strand, within MPMX20_04570at 4783.793 kb on - strandat 4783.832 kb on + strandat 4783.840 kb on - strandat 4783.963 kb on - strandat 4783.985 kb on + strandat 4783.985 kb on + strandat 4783.999 kb on + strandat 4783.999 kb on + strandat 4784.007 kb on - strandat 4784.017 kb on - strand, within MPMX20_04571at 4784.034 kb on + strand, within MPMX20_04571at 4784.034 kb on + strand, within MPMX20_04571at 4784.055 kb on + strand, within MPMX20_04571at 4784.089 kb on - strand, within MPMX20_04571at 4784.091 kb on + strand, within MPMX20_04571at 4784.091 kb on + strand, within MPMX20_04571at 4784.091 kb on + strand, within MPMX20_04571at 4784.091 kb on + strand, within MPMX20_04571at 4784.099 kb on - strand, within MPMX20_04571at 4784.101 kb on - strand, within MPMX20_04571at 4784.165 kb on - strand, within MPMX20_04571at 4784.232 kb on + strand, within MPMX20_04571at 4784.277 kb on + strand, within MPMX20_04571at 4784.290 kb on + strand, within MPMX20_04571at 4784.298 kb on - strand, within MPMX20_04571at 4784.322 kb on + strand, within MPMX20_04571at 4784.330 kb on - strand, within MPMX20_04571at 4784.330 kb on - strand, within MPMX20_04571at 4784.386 kb on - strand, within MPMX20_04571at 4784.497 kb on + strand, within MPMX20_04571at 4784.497 kb on + strand, within MPMX20_04571at 4784.497 kb on + strand, within MPMX20_04571at 4784.505 kb on - strand, within MPMX20_04571at 4784.505 kb on - strand, within MPMX20_04571at 4784.506 kb on - strand, within MPMX20_04571at 4784.519 kb on + strand, within MPMX20_04571at 4784.519 kb on + strand, within MPMX20_04571at 4784.569 kb on + strandat 4784.588 kb on + strandat 4784.588 kb on + strandat 4784.588 kb on + strandat 4784.591 kb on - strandat 4784.728 kb on - strand, within MPMX20_04572at 4784.732 kb on + strand, within MPMX20_04572at 4784.740 kb on - strand, within MPMX20_04572at 4784.782 kb on - strand, within MPMX20_04572at 4784.786 kb on + strand, within MPMX20_04572at 4784.786 kb on + strand, within MPMX20_04572at 4784.794 kb on - strand, within MPMX20_04572at 4784.843 kb on + strand, within MPMX20_04572at 4784.843 kb on + strand, within MPMX20_04572

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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4,782,309 - +2.5
4,782,326 + -1.2
4,782,333 - -3.0
4,782,439 + MPMX20_04569 0.15 +0.4
4,782,457 - MPMX20_04569 0.17 +0.7
4,782,495 + MPMX20_04569 0.21 -0.4
4,782,522 + MPMX20_04569 0.24 -0.6
4,782,541 + MPMX20_04569 0.26 +0.6
4,782,541 + MPMX20_04569 0.26 +2.1
4,782,541 + MPMX20_04569 0.26 -1.4
4,782,551 + MPMX20_04569 0.27 -2.7
4,782,661 + MPMX20_04569 0.38 -1.3
4,782,698 + MPMX20_04569 0.41 -0.5
4,782,731 + MPMX20_04569 0.45 +3.3
4,782,812 + MPMX20_04569 0.53 +1.9
4,782,833 + MPMX20_04569 0.55 -1.0
4,782,837 - MPMX20_04569 0.55 +0.3
4,782,876 - MPMX20_04569 0.59 -0.5
4,782,936 + MPMX20_04569 0.65 +1.9
4,782,944 - MPMX20_04569 0.66 -1.5
4,782,944 - MPMX20_04569 0.66 -0.4
4,782,958 - MPMX20_04569 0.68 -0.7
4,783,059 + MPMX20_04569 0.78 +0.8
4,783,078 - MPMX20_04569 0.80 -0.8
4,783,094 + MPMX20_04569 0.81 -0.5
4,783,146 - MPMX20_04569 0.86 -0.2
4,783,241 + -1.2
4,783,247 + +0.4
4,783,313 + -1.4
4,783,364 + MPMX20_04570 0.12 -2.7
4,783,393 + MPMX20_04570 0.17 -1.1
4,783,429 + MPMX20_04570 0.24 -1.8
4,783,431 + MPMX20_04570 0.24 -1.2
4,783,431 + MPMX20_04570 0.24 -2.5
4,783,431 + MPMX20_04570 0.24 -2.6
4,783,431 + MPMX20_04570 0.24 +1.5
4,783,431 + MPMX20_04570 0.24 -1.0
4,783,439 - MPMX20_04570 0.26 -1.7
4,783,439 - MPMX20_04570 0.26 -2.3
4,783,439 - MPMX20_04570 0.26 -0.7
4,783,459 + MPMX20_04570 0.29 -3.0
4,783,459 + MPMX20_04570 0.29 -2.7
4,783,469 + MPMX20_04570 0.31 -1.6
4,783,477 - MPMX20_04570 0.33 -1.8
4,783,477 - MPMX20_04570 0.33 -2.0
4,783,526 - MPMX20_04570 0.42 -1.9
4,783,572 + MPMX20_04570 0.50 -1.7
4,783,574 - MPMX20_04570 0.50 -1.9
4,783,627 - MPMX20_04570 0.60 -3.8
4,783,629 - MPMX20_04570 0.60 -1.5
4,783,672 + MPMX20_04570 0.68 -2.2
4,783,675 - MPMX20_04570 0.69 -2.5
4,783,680 - MPMX20_04570 0.70 -0.8
4,783,793 - -3.2
4,783,832 + -3.6
4,783,840 - -3.1
4,783,963 - -0.0
4,783,985 + +1.3
4,783,985 + +1.1
4,783,999 + -1.2
4,783,999 + +0.4
4,784,007 - +0.2
4,784,017 - MPMX20_04571 0.10 +0.2
4,784,034 + MPMX20_04571 0.13 +0.6
4,784,034 + MPMX20_04571 0.13 -0.3
4,784,055 + MPMX20_04571 0.16 -1.1
4,784,089 - MPMX20_04571 0.21 -0.5
4,784,091 + MPMX20_04571 0.21 +0.4
4,784,091 + MPMX20_04571 0.21 -1.0
4,784,091 + MPMX20_04571 0.21 -1.0
4,784,091 + MPMX20_04571 0.21 -0.5
4,784,099 - MPMX20_04571 0.22 +0.8
4,784,101 - MPMX20_04571 0.23 -0.7
4,784,165 - MPMX20_04571 0.32 -0.5
4,784,232 + MPMX20_04571 0.43 -2.3
4,784,277 + MPMX20_04571 0.49 +3.0
4,784,290 + MPMX20_04571 0.51 +0.5
4,784,298 - MPMX20_04571 0.53 +0.8
4,784,322 + MPMX20_04571 0.56 -0.1
4,784,330 - MPMX20_04571 0.57 -0.5
4,784,330 - MPMX20_04571 0.57 -0.6
4,784,386 - MPMX20_04571 0.66 -1.1
4,784,497 + MPMX20_04571 0.83 -0.0
4,784,497 + MPMX20_04571 0.83 -0.7
4,784,497 + MPMX20_04571 0.83 -0.1
4,784,505 - MPMX20_04571 0.84 -2.0
4,784,505 - MPMX20_04571 0.84 -1.0
4,784,506 - MPMX20_04571 0.84 +1.6
4,784,519 + MPMX20_04571 0.86 -1.9
4,784,519 + MPMX20_04571 0.86 +0.9
4,784,569 + -0.6
4,784,588 + +0.8
4,784,588 + -0.4
4,784,588 + -0.3
4,784,591 - +0.5
4,784,728 - MPMX20_04572 0.36 +0.2
4,784,732 + MPMX20_04572 0.38 +1.5
4,784,740 - MPMX20_04572 0.40 +0.0
4,784,782 - MPMX20_04572 0.53 +1.5
4,784,786 + MPMX20_04572 0.54 -0.3
4,784,786 + MPMX20_04572 0.54 +0.1
4,784,794 - MPMX20_04572 0.57 +1.8
4,784,843 + MPMX20_04572 0.72 -1.8
4,784,843 + MPMX20_04572 0.72 +2.1

Or see this region's nucleotide sequence