Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04569 and MPMX20_04570 are separated by 17 nucleotides MPMX20_04570 and MPMX20_04571 are separated by 104 nucleotides MPMX20_04571 and MPMX20_04572 overlap by 1 nucleotides
MPMX20_04569: MPMX20_04569 - HTH-type transcriptional regulator RafR, at 4,782,285 to 4,783,280
_04569
MPMX20_04570: MPMX20_04570 - HTH-type transcriptional regulator SutR, at 4,783,298 to 4,783,846
_04570
MPMX20_04571: MPMX20_04571 - hypothetical protein, at 4,783,951 to 4,784,610
_04571
MPMX20_04572: MPMX20_04572 - hypothetical protein, at 4,784,610 to 4,784,933
_04572
Position (kb)
4783
4784 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4782.309 kb on - strand at 4782.326 kb on + strand at 4782.333 kb on - strand at 4782.439 kb on + strand, within MPMX20_04569 at 4782.457 kb on - strand, within MPMX20_04569 at 4782.495 kb on + strand, within MPMX20_04569 at 4782.522 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.541 kb on + strand, within MPMX20_04569 at 4782.551 kb on + strand, within MPMX20_04569 at 4782.661 kb on + strand, within MPMX20_04569 at 4782.698 kb on + strand, within MPMX20_04569 at 4782.731 kb on + strand, within MPMX20_04569 at 4782.812 kb on + strand, within MPMX20_04569 at 4782.833 kb on + strand, within MPMX20_04569 at 4782.837 kb on - strand, within MPMX20_04569 at 4782.876 kb on - strand, within MPMX20_04569 at 4782.936 kb on + strand, within MPMX20_04569 at 4782.944 kb on - strand, within MPMX20_04569 at 4782.944 kb on - strand, within MPMX20_04569 at 4782.958 kb on - strand, within MPMX20_04569 at 4783.059 kb on + strand, within MPMX20_04569 at 4783.078 kb on - strand, within MPMX20_04569 at 4783.094 kb on + strand, within MPMX20_04569 at 4783.146 kb on - strand, within MPMX20_04569 at 4783.241 kb on + strand at 4783.247 kb on + strand at 4783.313 kb on + strand at 4783.364 kb on + strand, within MPMX20_04570 at 4783.393 kb on + strand, within MPMX20_04570 at 4783.429 kb on + strand, within MPMX20_04570 at 4783.431 kb on + strand, within MPMX20_04570 at 4783.431 kb on + strand, within MPMX20_04570 at 4783.431 kb on + strand, within MPMX20_04570 at 4783.431 kb on + strand, within MPMX20_04570 at 4783.431 kb on + strand, within MPMX20_04570 at 4783.439 kb on - strand, within MPMX20_04570 at 4783.439 kb on - strand, within MPMX20_04570 at 4783.439 kb on - strand, within MPMX20_04570 at 4783.459 kb on + strand, within MPMX20_04570 at 4783.459 kb on + strand, within MPMX20_04570 at 4783.469 kb on + strand, within MPMX20_04570 at 4783.477 kb on - strand, within MPMX20_04570 at 4783.477 kb on - strand, within MPMX20_04570 at 4783.526 kb on - strand, within MPMX20_04570 at 4783.572 kb on + strand, within MPMX20_04570 at 4783.574 kb on - strand, within MPMX20_04570 at 4783.627 kb on - strand, within MPMX20_04570 at 4783.629 kb on - strand, within MPMX20_04570 at 4783.672 kb on + strand, within MPMX20_04570 at 4783.675 kb on - strand, within MPMX20_04570 at 4783.680 kb on - strand, within MPMX20_04570 at 4783.793 kb on - strand at 4783.832 kb on + strand at 4783.840 kb on - strand at 4783.963 kb on - strand at 4783.985 kb on + strand at 4783.985 kb on + strand at 4783.999 kb on + strand at 4783.999 kb on + strand at 4784.007 kb on - strand at 4784.017 kb on - strand, within MPMX20_04571 at 4784.034 kb on + strand, within MPMX20_04571 at 4784.034 kb on + strand, within MPMX20_04571 at 4784.055 kb on + strand, within MPMX20_04571 at 4784.089 kb on - strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.091 kb on + strand, within MPMX20_04571 at 4784.099 kb on - strand, within MPMX20_04571 at 4784.101 kb on - strand, within MPMX20_04571 at 4784.165 kb on - strand, within MPMX20_04571 at 4784.232 kb on + strand, within MPMX20_04571 at 4784.277 kb on + strand, within MPMX20_04571 at 4784.290 kb on + strand, within MPMX20_04571 at 4784.298 kb on - strand, within MPMX20_04571 at 4784.322 kb on + strand, within MPMX20_04571 at 4784.330 kb on - strand, within MPMX20_04571 at 4784.330 kb on - strand, within MPMX20_04571 at 4784.386 kb on - strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.497 kb on + strand, within MPMX20_04571 at 4784.505 kb on - strand, within MPMX20_04571 at 4784.505 kb on - strand, within MPMX20_04571 at 4784.506 kb on - strand, within MPMX20_04571 at 4784.519 kb on + strand, within MPMX20_04571 at 4784.519 kb on + strand, within MPMX20_04571 at 4784.569 kb on + strand at 4784.588 kb on + strand at 4784.588 kb on + strand at 4784.588 kb on + strand at 4784.591 kb on - strand at 4784.728 kb on - strand, within MPMX20_04572 at 4784.732 kb on + strand, within MPMX20_04572 at 4784.740 kb on - strand, within MPMX20_04572 at 4784.782 kb on - strand, within MPMX20_04572 at 4784.786 kb on + strand, within MPMX20_04572 at 4784.786 kb on + strand, within MPMX20_04572 at 4784.794 kb on - strand, within MPMX20_04572 at 4784.843 kb on + strand, within MPMX20_04572 at 4784.843 kb on + strand, within MPMX20_04572
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 4,782,309 - +2.5 4,782,326 + -1.2 4,782,333 - -3.0 4,782,439 + MPMX20_04569 0.15 +0.4 4,782,457 - MPMX20_04569 0.17 +0.7 4,782,495 + MPMX20_04569 0.21 -0.4 4,782,522 + MPMX20_04569 0.24 -0.6 4,782,541 + MPMX20_04569 0.26 +0.6 4,782,541 + MPMX20_04569 0.26 +2.1 4,782,541 + MPMX20_04569 0.26 -1.4 4,782,551 + MPMX20_04569 0.27 -2.7 4,782,661 + MPMX20_04569 0.38 -1.3 4,782,698 + MPMX20_04569 0.41 -0.5 4,782,731 + MPMX20_04569 0.45 +3.3 4,782,812 + MPMX20_04569 0.53 +1.9 4,782,833 + MPMX20_04569 0.55 -1.0 4,782,837 - MPMX20_04569 0.55 +0.3 4,782,876 - MPMX20_04569 0.59 -0.5 4,782,936 + MPMX20_04569 0.65 +1.9 4,782,944 - MPMX20_04569 0.66 -1.5 4,782,944 - MPMX20_04569 0.66 -0.4 4,782,958 - MPMX20_04569 0.68 -0.7 4,783,059 + MPMX20_04569 0.78 +0.8 4,783,078 - MPMX20_04569 0.80 -0.8 4,783,094 + MPMX20_04569 0.81 -0.5 4,783,146 - MPMX20_04569 0.86 -0.2 4,783,241 + -1.2 4,783,247 + +0.4 4,783,313 + -1.4 4,783,364 + MPMX20_04570 0.12 -2.7 4,783,393 + MPMX20_04570 0.17 -1.1 4,783,429 + MPMX20_04570 0.24 -1.8 4,783,431 + MPMX20_04570 0.24 -1.2 4,783,431 + MPMX20_04570 0.24 -2.5 4,783,431 + MPMX20_04570 0.24 -2.6 4,783,431 + MPMX20_04570 0.24 +1.5 4,783,431 + MPMX20_04570 0.24 -1.0 4,783,439 - MPMX20_04570 0.26 -1.7 4,783,439 - MPMX20_04570 0.26 -2.3 4,783,439 - MPMX20_04570 0.26 -0.7 4,783,459 + MPMX20_04570 0.29 -3.0 4,783,459 + MPMX20_04570 0.29 -2.7 4,783,469 + MPMX20_04570 0.31 -1.6 4,783,477 - MPMX20_04570 0.33 -1.8 4,783,477 - MPMX20_04570 0.33 -2.0 4,783,526 - MPMX20_04570 0.42 -1.9 4,783,572 + MPMX20_04570 0.50 -1.7 4,783,574 - MPMX20_04570 0.50 -1.9 4,783,627 - MPMX20_04570 0.60 -3.8 4,783,629 - MPMX20_04570 0.60 -1.5 4,783,672 + MPMX20_04570 0.68 -2.2 4,783,675 - MPMX20_04570 0.69 -2.5 4,783,680 - MPMX20_04570 0.70 -0.8 4,783,793 - -3.2 4,783,832 + -3.6 4,783,840 - -3.1 4,783,963 - -0.0 4,783,985 + +1.3 4,783,985 + +1.1 4,783,999 + -1.2 4,783,999 + +0.4 4,784,007 - +0.2 4,784,017 - MPMX20_04571 0.10 +0.2 4,784,034 + MPMX20_04571 0.13 +0.6 4,784,034 + MPMX20_04571 0.13 -0.3 4,784,055 + MPMX20_04571 0.16 -1.1 4,784,089 - MPMX20_04571 0.21 -0.5 4,784,091 + MPMX20_04571 0.21 +0.4 4,784,091 + MPMX20_04571 0.21 -1.0 4,784,091 + MPMX20_04571 0.21 -1.0 4,784,091 + MPMX20_04571 0.21 -0.5 4,784,099 - MPMX20_04571 0.22 +0.8 4,784,101 - MPMX20_04571 0.23 -0.7 4,784,165 - MPMX20_04571 0.32 -0.5 4,784,232 + MPMX20_04571 0.43 -2.3 4,784,277 + MPMX20_04571 0.49 +3.0 4,784,290 + MPMX20_04571 0.51 +0.5 4,784,298 - MPMX20_04571 0.53 +0.8 4,784,322 + MPMX20_04571 0.56 -0.1 4,784,330 - MPMX20_04571 0.57 -0.5 4,784,330 - MPMX20_04571 0.57 -0.6 4,784,386 - MPMX20_04571 0.66 -1.1 4,784,497 + MPMX20_04571 0.83 -0.0 4,784,497 + MPMX20_04571 0.83 -0.7 4,784,497 + MPMX20_04571 0.83 -0.1 4,784,505 - MPMX20_04571 0.84 -2.0 4,784,505 - MPMX20_04571 0.84 -1.0 4,784,506 - MPMX20_04571 0.84 +1.6 4,784,519 + MPMX20_04571 0.86 -1.9 4,784,519 + MPMX20_04571 0.86 +0.9 4,784,569 + -0.6 4,784,588 + +0.8 4,784,588 + -0.4 4,784,588 + -0.3 4,784,591 - +0.5 4,784,728 - MPMX20_04572 0.36 +0.2 4,784,732 + MPMX20_04572 0.38 +1.5 4,784,740 - MPMX20_04572 0.40 +0.0 4,784,782 - MPMX20_04572 0.53 +1.5 4,784,786 + MPMX20_04572 0.54 -0.3 4,784,786 + MPMX20_04572 0.54 +0.1 4,784,794 - MPMX20_04572 0.57 +1.8 4,784,843 + MPMX20_04572 0.72 -1.8 4,784,843 + MPMX20_04572 0.72 +2.1
Or see this region's nucleotide sequence