Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01851

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01850 and MPMX20_01851 are separated by 167 nucleotidesMPMX20_01851 and MPMX20_01852 are separated by 116 nucleotides MPMX20_01850: MPMX20_01850 - Protease 4, at 1,943,143 to 1,944,999 _01850 MPMX20_01851: MPMX20_01851 - Putative NAD(P)H nitroreductase YdjA, at 1,945,167 to 1,945,718 _01851 MPMX20_01852: MPMX20_01852 - Selenide, water dikinase, at 1,945,835 to 1,946,878 _01852 Position (kb) 1945 1946Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1944.169 kb on - strand, within MPMX20_01850at 1944.197 kb on + strand, within MPMX20_01850at 1944.197 kb on + strand, within MPMX20_01850at 1944.197 kb on + strand, within MPMX20_01850at 1944.205 kb on - strand, within MPMX20_01850at 1944.205 kb on - strand, within MPMX20_01850at 1944.394 kb on + strand, within MPMX20_01850at 1944.396 kb on + strand, within MPMX20_01850at 1944.459 kb on - strand, within MPMX20_01850at 1944.470 kb on + strand, within MPMX20_01850at 1944.470 kb on + strand, within MPMX20_01850at 1944.478 kb on - strand, within MPMX20_01850at 1944.502 kb on + strand, within MPMX20_01850at 1944.525 kb on + strand, within MPMX20_01850at 1944.539 kb on - strand, within MPMX20_01850at 1944.541 kb on + strand, within MPMX20_01850at 1944.614 kb on - strand, within MPMX20_01850at 1944.674 kb on + strand, within MPMX20_01850at 1944.682 kb on - strand, within MPMX20_01850at 1944.692 kb on + strand, within MPMX20_01850at 1944.786 kb on - strand, within MPMX20_01850at 1944.938 kb on + strandat 1944.938 kb on + strandat 1944.948 kb on + strandat 1944.959 kb on + strandat 1944.984 kb on + strandat 1945.016 kb on + strandat 1945.098 kb on + strandat 1945.098 kb on - strandat 1945.103 kb on - strandat 1945.174 kb on + strandat 1945.174 kb on + strandat 1945.174 kb on + strandat 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.182 kb on - strandat 1945.212 kb on - strandat 1945.285 kb on - strand, within MPMX20_01851at 1945.285 kb on - strand, within MPMX20_01851at 1945.366 kb on - strand, within MPMX20_01851at 1945.438 kb on - strand, within MPMX20_01851at 1945.475 kb on + strand, within MPMX20_01851at 1945.536 kb on + strand, within MPMX20_01851at 1945.542 kb on + strand, within MPMX20_01851at 1945.542 kb on + strand, within MPMX20_01851at 1945.543 kb on + strand, within MPMX20_01851at 1945.600 kb on + strand, within MPMX20_01851at 1945.666 kb on - strandat 1945.666 kb on - strandat 1945.690 kb on + strandat 1945.730 kb on + strandat 1945.774 kb on + strandat 1945.779 kb on - strandat 1945.802 kb on + strandat 1945.829 kb on - strandat 1945.870 kb on - strandat 1945.926 kb on + strandat 1945.927 kb on - strandat 1945.934 kb on - strandat 1945.936 kb on + strandat 1945.950 kb on + strand, within MPMX20_01852at 1945.995 kb on + strand, within MPMX20_01852at 1946.051 kb on + strand, within MPMX20_01852at 1946.089 kb on + strand, within MPMX20_01852at 1946.155 kb on - strand, within MPMX20_01852at 1946.170 kb on - strand, within MPMX20_01852at 1946.210 kb on + strand, within MPMX20_01852at 1946.326 kb on + strand, within MPMX20_01852at 1946.354 kb on - strand, within MPMX20_01852at 1946.382 kb on - strand, within MPMX20_01852at 1946.384 kb on - strand, within MPMX20_01852at 1946.386 kb on + strand, within MPMX20_01852at 1946.394 kb on - strand, within MPMX20_01852at 1946.426 kb on + strand, within MPMX20_01852at 1946.426 kb on + strand, within MPMX20_01852at 1946.434 kb on - strand, within MPMX20_01852at 1946.471 kb on + strand, within MPMX20_01852at 1946.471 kb on + strand, within MPMX20_01852at 1946.516 kb on - strand, within MPMX20_01852at 1946.523 kb on + strand, within MPMX20_01852at 1946.523 kb on + strand, within MPMX20_01852at 1946.554 kb on + strand, within MPMX20_01852at 1946.581 kb on + strand, within MPMX20_01852at 1946.623 kb on - strand, within MPMX20_01852at 1946.717 kb on + strand, within MPMX20_01852

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,944,169 - MPMX20_01850 0.55 -0.9
1,944,197 + MPMX20_01850 0.57 +0.2
1,944,197 + MPMX20_01850 0.57 -2.1
1,944,197 + MPMX20_01850 0.57 -2.0
1,944,205 - MPMX20_01850 0.57 +3.2
1,944,205 - MPMX20_01850 0.57 +1.5
1,944,394 + MPMX20_01850 0.67 -1.5
1,944,396 + MPMX20_01850 0.67 -1.8
1,944,459 - MPMX20_01850 0.71 -0.7
1,944,470 + MPMX20_01850 0.71 -0.4
1,944,470 + MPMX20_01850 0.71 +1.1
1,944,478 - MPMX20_01850 0.72 -3.3
1,944,502 + MPMX20_01850 0.73 -1.0
1,944,525 + MPMX20_01850 0.74 +0.0
1,944,539 - MPMX20_01850 0.75 -0.3
1,944,541 + MPMX20_01850 0.75 -0.1
1,944,614 - MPMX20_01850 0.79 -0.8
1,944,674 + MPMX20_01850 0.82 +0.7
1,944,682 - MPMX20_01850 0.83 +0.4
1,944,692 + MPMX20_01850 0.83 -0.8
1,944,786 - MPMX20_01850 0.88 -0.6
1,944,938 + +0.4
1,944,938 + +1.5
1,944,948 + -3.1
1,944,959 + -0.6
1,944,984 + -0.6
1,945,016 + -1.6
1,945,098 + +0.7
1,945,098 - -1.4
1,945,103 - -0.6
1,945,174 + -1.8
1,945,174 + -2.0
1,945,174 + +0.4
1,945,182 - -2.7
1,945,182 - -2.1
1,945,182 - -1.4
1,945,182 - -0.9
1,945,182 - -1.1
1,945,182 - -1.0
1,945,212 - -2.3
1,945,285 - MPMX20_01851 0.21 -1.2
1,945,285 - MPMX20_01851 0.21 -2.2
1,945,366 - MPMX20_01851 0.36 +0.2
1,945,438 - MPMX20_01851 0.49 -2.2
1,945,475 + MPMX20_01851 0.56 -1.5
1,945,536 + MPMX20_01851 0.67 -0.4
1,945,542 + MPMX20_01851 0.68 +0.7
1,945,542 + MPMX20_01851 0.68 -1.2
1,945,543 + MPMX20_01851 0.68 -1.8
1,945,600 + MPMX20_01851 0.78 +0.2
1,945,666 - -2.2
1,945,666 - -1.5
1,945,690 + -3.0
1,945,730 + +1.3
1,945,774 + -0.1
1,945,779 - -0.2
1,945,802 + +0.1
1,945,829 - -0.1
1,945,870 - +0.9
1,945,926 + -0.9
1,945,927 - -0.4
1,945,934 - +0.5
1,945,936 + -2.2
1,945,950 + MPMX20_01852 0.11 +2.4
1,945,995 + MPMX20_01852 0.15 -1.4
1,946,051 + MPMX20_01852 0.21 -0.3
1,946,089 + MPMX20_01852 0.24 -0.5
1,946,155 - MPMX20_01852 0.31 -0.4
1,946,170 - MPMX20_01852 0.32 +0.0
1,946,210 + MPMX20_01852 0.36 -0.8
1,946,326 + MPMX20_01852 0.47 -0.3
1,946,354 - MPMX20_01852 0.50 +0.7
1,946,382 - MPMX20_01852 0.52 +1.3
1,946,384 - MPMX20_01852 0.53 +0.8
1,946,386 + MPMX20_01852 0.53 +1.0
1,946,394 - MPMX20_01852 0.54 -0.5
1,946,426 + MPMX20_01852 0.57 +0.4
1,946,426 + MPMX20_01852 0.57 +0.2
1,946,434 - MPMX20_01852 0.57 -2.5
1,946,471 + MPMX20_01852 0.61 -0.7
1,946,471 + MPMX20_01852 0.61 -1.8
1,946,516 - MPMX20_01852 0.65 -1.6
1,946,523 + MPMX20_01852 0.66 -1.8
1,946,523 + MPMX20_01852 0.66 -0.7
1,946,554 + MPMX20_01852 0.69 -0.4
1,946,581 + MPMX20_01852 0.71 -2.6
1,946,623 - MPMX20_01852 0.75 +1.1
1,946,717 + MPMX20_01852 0.84 -0.9

Or see this region's nucleotide sequence