Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01031

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01030 and MPMX20_01031 are separated by 210 nucleotidesMPMX20_01031 and MPMX20_01032 are separated by 212 nucleotides MPMX20_01030: MPMX20_01030 - Lon protease, at 1,084,024 to 1,086,378 _01030 MPMX20_01031: MPMX20_01031 - DNA-binding protein HU-beta, at 1,086,589 to 1,086,861 _01031 MPMX20_01032: MPMX20_01032 - Peptidyl-prolyl cis-trans isomerase D, at 1,087,074 to 1,088,945 _01032 Position (kb) 1086 1087Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1085.596 kb on - strand, within MPMX20_01030at 1085.598 kb on - strand, within MPMX20_01030at 1085.598 kb on - strand, within MPMX20_01030at 1085.809 kb on + strand, within MPMX20_01030at 1085.809 kb on + strand, within MPMX20_01030at 1085.903 kb on - strand, within MPMX20_01030at 1085.903 kb on - strand, within MPMX20_01030at 1086.163 kb on - strandat 1086.213 kb on + strandat 1086.291 kb on + strandat 1086.291 kb on + strandat 1086.393 kb on - strandat 1086.393 kb on - strandat 1086.405 kb on + strandat 1086.405 kb on + strandat 1086.464 kb on + strandat 1086.464 kb on - strandat 1086.469 kb on + strandat 1086.469 kb on + strandat 1086.487 kb on - strandat 1086.495 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.502 kb on + strandat 1086.515 kb on - strandat 1086.576 kb on + strandat 1086.599 kb on - strandat 1086.718 kb on - strand, within MPMX20_01031at 1086.726 kb on - strand, within MPMX20_01031at 1086.742 kb on + strand, within MPMX20_01031at 1086.891 kb on + strandat 1086.891 kb on + strandat 1086.891 kb on + strandat 1086.899 kb on - strandat 1086.899 kb on - strandat 1086.933 kb on + strandat 1086.936 kb on - strandat 1086.936 kb on - strandat 1086.936 kb on - strandat 1086.941 kb on - strandat 1086.941 kb on - strandat 1086.941 kb on - strandat 1087.001 kb on - strandat 1087.046 kb on - strandat 1087.046 kb on - strandat 1087.084 kb on + strandat 1087.084 kb on - strandat 1087.095 kb on + strandat 1087.095 kb on + strandat 1087.105 kb on + strandat 1087.165 kb on + strandat 1087.233 kb on - strandat 1087.259 kb on + strandat 1087.267 kb on - strand, within MPMX20_01032at 1087.281 kb on - strand, within MPMX20_01032at 1087.421 kb on + strand, within MPMX20_01032at 1087.505 kb on + strand, within MPMX20_01032at 1087.508 kb on + strand, within MPMX20_01032at 1087.558 kb on + strand, within MPMX20_01032at 1087.558 kb on + strand, within MPMX20_01032at 1087.573 kb on - strand, within MPMX20_01032at 1087.634 kb on - strand, within MPMX20_01032at 1087.634 kb on - strand, within MPMX20_01032at 1087.720 kb on - strand, within MPMX20_01032at 1087.753 kb on + strand, within MPMX20_01032at 1087.761 kb on - strand, within MPMX20_01032at 1087.761 kb on - strand, within MPMX20_01032at 1087.786 kb on - strand, within MPMX20_01032at 1087.810 kb on - strand, within MPMX20_01032

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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1,085,596 - MPMX20_01030 0.67 -1.6
1,085,598 - MPMX20_01030 0.67 -1.6
1,085,598 - MPMX20_01030 0.67 -1.3
1,085,809 + MPMX20_01030 0.76 -2.5
1,085,809 + MPMX20_01030 0.76 -1.7
1,085,903 - MPMX20_01030 0.80 -1.2
1,085,903 - MPMX20_01030 0.80 -1.3
1,086,163 - -1.3
1,086,213 + -3.3
1,086,291 + -1.9
1,086,291 + -2.8
1,086,393 - -0.6
1,086,393 - -0.9
1,086,405 + +1.3
1,086,405 + +1.9
1,086,464 + +1.0
1,086,464 - -0.8
1,086,469 + -0.2
1,086,469 + +0.6
1,086,487 - +0.3
1,086,495 + +0.6
1,086,502 + +0.6
1,086,502 + -0.1
1,086,502 + -0.5
1,086,502 + +0.6
1,086,515 - -0.9
1,086,576 + +0.6
1,086,599 - -0.1
1,086,718 - MPMX20_01031 0.47 -1.7
1,086,726 - MPMX20_01031 0.50 -0.3
1,086,742 + MPMX20_01031 0.56 -1.6
1,086,891 + -0.2
1,086,891 + -1.3
1,086,891 + +0.2
1,086,899 - +0.0
1,086,899 - -1.0
1,086,933 + +1.0
1,086,936 - -3.1
1,086,936 - +0.8
1,086,936 - -3.4
1,086,941 - -1.6
1,086,941 - -0.5
1,086,941 - +0.4
1,087,001 - -1.4
1,087,046 - -2.1
1,087,046 - +0.6
1,087,084 + -0.6
1,087,084 - -0.5
1,087,095 + -0.4
1,087,095 + +0.5
1,087,105 + +0.6
1,087,165 + -0.4
1,087,233 - +0.7
1,087,259 + -0.2
1,087,267 - MPMX20_01032 0.10 +1.3
1,087,281 - MPMX20_01032 0.11 -1.7
1,087,421 + MPMX20_01032 0.19 +0.0
1,087,505 + MPMX20_01032 0.23 -0.5
1,087,508 + MPMX20_01032 0.23 +1.3
1,087,558 + MPMX20_01032 0.26 -0.8
1,087,558 + MPMX20_01032 0.26 -0.6
1,087,573 - MPMX20_01032 0.27 +0.6
1,087,634 - MPMX20_01032 0.30 +2.6
1,087,634 - MPMX20_01032 0.30 +1.4
1,087,720 - MPMX20_01032 0.35 +1.7
1,087,753 + MPMX20_01032 0.36 -2.2
1,087,761 - MPMX20_01032 0.37 -1.1
1,087,761 - MPMX20_01032 0.37 +1.7
1,087,786 - MPMX20_01032 0.38 -0.0
1,087,810 - MPMX20_01032 0.39 +1.4

Or see this region's nucleotide sequence