Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01012 and MPMX20_01013 are separated by 0 nucleotides MPMX20_01013 and MPMX20_01014 are separated by 312 nucleotides MPMX20_01014 and MPMX20_01015 are separated by 45 nucleotides MPMX20_01015 and MPMX20_01016 overlap by 38 nucleotides
MPMX20_01012: MPMX20_01012 - Farnesyl diphosphate synthase, at 1,065,285 to 1,066,184
_01012
MPMX20_01013: MPMX20_01013 - Exodeoxyribonuclease 7 small subunit, at 1,066,185 to 1,066,427
_01013
MPMX20_01014: MPMX20_01014 - tRNA sulfurtransferase, at 1,066,740 to 1,068,188
_01014
MPMX20_01015: MPMX20_01015 - Protein/nucleic acid deglycase 3, at 1,068,234 to 1,068,827
_01015
MPMX20_01016: MPMX20_01016 - 2-dehydropantoate 2-reductase, at 1,068,790 to 1,069,701
_01016
Position (kb)
1066
1067
1068
1069 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1066.448 kb on - strand at 1066.500 kb on + strand at 1066.500 kb on + strand at 1066.500 kb on + strand at 1066.508 kb on - strand at 1066.508 kb on - strand at 1066.508 kb on - strand at 1066.508 kb on - strand at 1066.508 kb on - strand at 1066.520 kb on + strand at 1066.520 kb on - strand at 1066.537 kb on + strand at 1066.553 kb on + strand at 1066.553 kb on + strand at 1066.553 kb on + strand at 1066.554 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.561 kb on - strand at 1066.563 kb on + strand at 1066.563 kb on + strand at 1066.563 kb on + strand at 1066.563 kb on + strand at 1066.571 kb on + strand at 1066.571 kb on - strand at 1066.571 kb on - strand at 1066.571 kb on - strand at 1066.571 kb on - strand at 1066.585 kb on - strand at 1066.587 kb on + strand at 1066.606 kb on - strand at 1066.628 kb on + strand at 1066.634 kb on + strand at 1066.636 kb on - strand at 1066.664 kb on + strand at 1066.709 kb on + strand at 1066.709 kb on + strand at 1066.709 kb on + strand at 1066.709 kb on + strand at 1066.710 kb on + strand at 1066.710 kb on + strand at 1066.710 kb on + strand at 1066.710 kb on + strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.717 kb on - strand at 1066.781 kb on + strand at 1066.877 kb on - strand at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.885 kb on + strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.893 kb on - strand, within MPMX20_01014 at 1066.942 kb on + strand, within MPMX20_01014 at 1066.942 kb on + strand, within MPMX20_01014 at 1066.942 kb on + strand, within MPMX20_01014 at 1066.950 kb on - strand, within MPMX20_01014 at 1066.950 kb on - strand, within MPMX20_01014 at 1066.950 kb on - strand, within MPMX20_01014 at 1066.950 kb on - strand, within MPMX20_01014 at 1066.986 kb on + strand, within MPMX20_01014 at 1066.986 kb on + strand, within MPMX20_01014 at 1066.994 kb on - strand, within MPMX20_01014 at 1066.994 kb on - strand, within MPMX20_01014 at 1067.032 kb on + strand, within MPMX20_01014 at 1067.035 kb on - strand, within MPMX20_01014 at 1067.064 kb on - strand, within MPMX20_01014 at 1067.093 kb on + strand, within MPMX20_01014 at 1067.101 kb on + strand, within MPMX20_01014 at 1067.101 kb on - strand, within MPMX20_01014 at 1067.114 kb on + strand, within MPMX20_01014 at 1067.114 kb on + strand, within MPMX20_01014 at 1067.129 kb on - strand, within MPMX20_01014 at 1067.131 kb on + strand, within MPMX20_01014 at 1067.173 kb on + strand, within MPMX20_01014 at 1067.173 kb on + strand, within MPMX20_01014 at 1067.320 kb on + strand, within MPMX20_01014 at 1067.331 kb on - strand, within MPMX20_01014 at 1067.360 kb on - strand, within MPMX20_01014 at 1067.380 kb on - strand, within MPMX20_01014 at 1067.426 kb on - strand, within MPMX20_01014 at 1067.534 kb on - strand, within MPMX20_01014 at 1067.570 kb on + strand, within MPMX20_01014 at 1067.570 kb on + strand, within MPMX20_01014 at 1067.578 kb on - strand, within MPMX20_01014 at 1067.604 kb on + strand, within MPMX20_01014 at 1067.610 kb on + strand, within MPMX20_01014 at 1067.623 kb on + strand, within MPMX20_01014 at 1068.073 kb on + strand at 1068.081 kb on - strand at 1068.106 kb on - strand at 1068.117 kb on + strand at 1068.117 kb on + strand at 1068.117 kb on + strand at 1068.150 kb on + strand at 1068.181 kb on - strand at 1068.239 kb on - strand at 1068.288 kb on + strand at 1068.454 kb on + strand, within MPMX20_01015 at 1068.533 kb on - strand, within MPMX20_01015 at 1068.614 kb on + strand, within MPMX20_01015 at 1068.677 kb on - strand, within MPMX20_01015 at 1068.783 kb on - strand at 1068.810 kb on - strand at 1068.820 kb on - strand at 1068.833 kb on - strand at 1068.837 kb on + strand at 1068.837 kb on + strand at 1068.850 kb on - strand at 1068.922 kb on + strand, within MPMX20_01016 at 1069.018 kb on + strand, within MPMX20_01016 at 1069.074 kb on - strand, within MPMX20_01016
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 1,066,448 - -1.1 1,066,500 + -0.4 1,066,500 + -0.6 1,066,500 + +1.2 1,066,508 - -0.8 1,066,508 - +2.1 1,066,508 - -0.7 1,066,508 - -1.7 1,066,508 - -1.0 1,066,520 + -1.5 1,066,520 - -0.7 1,066,537 + +1.5 1,066,553 + -0.0 1,066,553 + -1.3 1,066,553 + +0.4 1,066,554 - +0.2 1,066,561 - -0.8 1,066,561 - -0.9 1,066,561 - -1.3 1,066,561 - -0.5 1,066,561 - -0.0 1,066,561 - +1.3 1,066,561 - -0.2 1,066,561 - -0.2 1,066,561 - -0.1 1,066,563 + +0.4 1,066,563 + +0.3 1,066,563 + +1.8 1,066,563 + -0.5 1,066,571 + +0.1 1,066,571 - +2.3 1,066,571 - -0.8 1,066,571 - +2.0 1,066,571 - -1.2 1,066,585 - -1.6 1,066,587 + +1.2 1,066,606 - +0.2 1,066,628 + -0.5 1,066,634 + -1.3 1,066,636 - +0.6 1,066,664 + +0.1 1,066,709 + -0.6 1,066,709 + -0.4 1,066,709 + +0.4 1,066,709 + -0.1 1,066,710 + -0.0 1,066,710 + -0.5 1,066,710 + -1.2 1,066,710 + -1.4 1,066,717 - -1.0 1,066,717 - -1.5 1,066,717 - -1.2 1,066,717 - -0.6 1,066,717 - +0.0 1,066,717 - -1.3 1,066,717 - -0.9 1,066,781 + -1.1 1,066,877 - -0.4 1,066,885 + MPMX20_01014 0.10 -2.3 1,066,885 + MPMX20_01014 0.10 +1.3 1,066,885 + MPMX20_01014 0.10 +0.1 1,066,885 + MPMX20_01014 0.10 -0.6 1,066,885 + MPMX20_01014 0.10 -1.2 1,066,885 + MPMX20_01014 0.10 -1.7 1,066,885 + MPMX20_01014 0.10 -0.3 1,066,885 + MPMX20_01014 0.10 +0.0 1,066,893 - MPMX20_01014 0.11 -2.8 1,066,893 - MPMX20_01014 0.11 -1.6 1,066,893 - MPMX20_01014 0.11 -0.9 1,066,893 - MPMX20_01014 0.11 +0.3 1,066,893 - MPMX20_01014 0.11 -3.0 1,066,893 - MPMX20_01014 0.11 -2.8 1,066,893 - MPMX20_01014 0.11 -1.3 1,066,893 - MPMX20_01014 0.11 -1.6 1,066,893 - MPMX20_01014 0.11 -1.6 1,066,893 - MPMX20_01014 0.11 -0.8 1,066,942 + MPMX20_01014 0.14 +0.1 1,066,942 + MPMX20_01014 0.14 -0.9 1,066,942 + MPMX20_01014 0.14 +0.7 1,066,950 - MPMX20_01014 0.14 -1.4 1,066,950 - MPMX20_01014 0.14 -1.2 1,066,950 - MPMX20_01014 0.14 +1.0 1,066,950 - MPMX20_01014 0.14 -2.0 1,066,986 + MPMX20_01014 0.17 -1.0 1,066,986 + MPMX20_01014 0.17 -1.2 1,066,994 - MPMX20_01014 0.18 -2.2 1,066,994 - MPMX20_01014 0.18 -1.7 1,067,032 + MPMX20_01014 0.20 -3.0 1,067,035 - MPMX20_01014 0.20 -1.0 1,067,064 - MPMX20_01014 0.22 -3.7 1,067,093 + MPMX20_01014 0.24 -1.3 1,067,101 + MPMX20_01014 0.25 -0.1 1,067,101 - MPMX20_01014 0.25 +0.4 1,067,114 + MPMX20_01014 0.26 -0.7 1,067,114 + MPMX20_01014 0.26 -0.6 1,067,129 - MPMX20_01014 0.27 -1.3 1,067,131 + MPMX20_01014 0.27 -1.2 1,067,173 + MPMX20_01014 0.30 +0.0 1,067,173 + MPMX20_01014 0.30 -1.3 1,067,320 + MPMX20_01014 0.40 -1.0 1,067,331 - MPMX20_01014 0.41 -2.1 1,067,360 - MPMX20_01014 0.43 -0.1 1,067,380 - MPMX20_01014 0.44 -0.3 1,067,426 - MPMX20_01014 0.47 -0.6 1,067,534 - MPMX20_01014 0.55 -1.8 1,067,570 + MPMX20_01014 0.57 -0.5 1,067,570 + MPMX20_01014 0.57 +0.0 1,067,578 - MPMX20_01014 0.58 -2.3 1,067,604 + MPMX20_01014 0.60 +1.7 1,067,610 + MPMX20_01014 0.60 -0.7 1,067,623 + MPMX20_01014 0.61 -3.8 1,068,073 + -0.6 1,068,081 - -0.8 1,068,106 - -4.0 1,068,117 + +0.1 1,068,117 + -0.6 1,068,117 + -0.2 1,068,150 + -1.3 1,068,181 - -1.9 1,068,239 - -0.1 1,068,288 + -0.6 1,068,454 + MPMX20_01015 0.37 +2.5 1,068,533 - MPMX20_01015 0.50 +0.3 1,068,614 + MPMX20_01015 0.64 +0.1 1,068,677 - MPMX20_01015 0.75 -0.3 1,068,783 - -2.0 1,068,810 - +0.2 1,068,820 - -1.6 1,068,833 - -0.3 1,068,837 + +0.4 1,068,837 + +0.1 1,068,850 - -0.6 1,068,922 + MPMX20_01016 0.14 -0.5 1,069,018 + MPMX20_01016 0.25 -0.2 1,069,074 - MPMX20_01016 0.31 +0.7
Or see this region's nucleotide sequence