Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03526

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03525 and MPMX20_03526 are separated by 171 nucleotidesMPMX20_03526 and MPMX20_03527 overlap by 29 nucleotidesMPMX20_03527 and MPMX20_03528 are separated by 69 nucleotides MPMX20_03525: MPMX20_03525 - Type I secretion system membrane fusion protein PrsE, at 3,721,551 to 3,722,750 _03525 MPMX20_03526: MPMX20_03526 - Nucleoside triphosphatase NudI, at 3,722,922 to 3,723,347 _03526 MPMX20_03527: MPMX20_03527 - HTH-type transcriptional regulator NimR, at 3,723,319 to 3,724,077 _03527 MPMX20_03528: MPMX20_03528 - hypothetical protein, at 3,724,147 to 3,724,566 _03528 Position (kb) 3722 3723 3724Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3722.015 kb on - strand, within MPMX20_03525at 3722.024 kb on + strand, within MPMX20_03525at 3722.032 kb on + strand, within MPMX20_03525at 3722.032 kb on - strand, within MPMX20_03525at 3722.055 kb on + strand, within MPMX20_03525at 3722.063 kb on - strand, within MPMX20_03525at 3722.131 kb on - strand, within MPMX20_03525at 3722.187 kb on + strand, within MPMX20_03525at 3722.199 kb on + strand, within MPMX20_03525at 3722.205 kb on - strand, within MPMX20_03525at 3722.214 kb on + strand, within MPMX20_03525at 3722.375 kb on + strand, within MPMX20_03525at 3722.383 kb on - strand, within MPMX20_03525at 3722.447 kb on - strand, within MPMX20_03525at 3722.481 kb on + strand, within MPMX20_03525at 3722.528 kb on - strand, within MPMX20_03525at 3722.535 kb on - strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.544 kb on + strand, within MPMX20_03525at 3722.568 kb on - strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.598 kb on + strand, within MPMX20_03525at 3722.603 kb on + strand, within MPMX20_03525at 3722.603 kb on + strand, within MPMX20_03525at 3722.606 kb on - strand, within MPMX20_03525at 3722.611 kb on - strand, within MPMX20_03525at 3722.623 kb on - strand, within MPMX20_03525at 3722.641 kb on - strandat 3722.641 kb on - strandat 3722.669 kb on + strandat 3722.677 kb on - strandat 3722.677 kb on - strandat 3722.696 kb on + strandat 3722.722 kb on - strandat 3722.752 kb on - strandat 3722.757 kb on - strandat 3722.790 kb on - strandat 3722.800 kb on - strandat 3722.801 kb on - strandat 3722.820 kb on + strandat 3722.830 kb on + strandat 3722.830 kb on + strandat 3722.830 kb on + strandat 3722.838 kb on - strandat 3722.858 kb on + strandat 3722.866 kb on - strandat 3723.037 kb on + strand, within MPMX20_03526at 3723.045 kb on - strand, within MPMX20_03526at 3723.098 kb on - strand, within MPMX20_03526at 3723.098 kb on - strand, within MPMX20_03526at 3723.105 kb on + strand, within MPMX20_03526at 3723.119 kb on + strand, within MPMX20_03526at 3723.120 kb on + strand, within MPMX20_03526at 3723.125 kb on + strand, within MPMX20_03526at 3723.128 kb on - strand, within MPMX20_03526at 3723.214 kb on + strand, within MPMX20_03526at 3723.258 kb on - strand, within MPMX20_03526at 3723.282 kb on - strand, within MPMX20_03526at 3723.305 kb on - strandat 3723.309 kb on + strandat 3723.419 kb on + strand, within MPMX20_03527at 3723.468 kb on + strand, within MPMX20_03527at 3723.543 kb on + strand, within MPMX20_03527at 3723.580 kb on + strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.588 kb on - strand, within MPMX20_03527at 3723.677 kb on + strand, within MPMX20_03527at 3723.683 kb on - strand, within MPMX20_03527at 3723.702 kb on + strand, within MPMX20_03527at 3723.812 kb on + strand, within MPMX20_03527at 3723.875 kb on + strand, within MPMX20_03527at 3723.890 kb on + strand, within MPMX20_03527at 3723.903 kb on - strand, within MPMX20_03527at 3723.931 kb on + strand, within MPMX20_03527at 3723.931 kb on + strand, within MPMX20_03527at 3724.024 kb on + strandat 3724.032 kb on + strandat 3724.113 kb on + strandat 3724.141 kb on + strandat 3724.144 kb on + strandat 3724.152 kb on - strandat 3724.165 kb on - strandat 3724.166 kb on + strandat 3724.268 kb on + strand, within MPMX20_03528at 3724.278 kb on + strand, within MPMX20_03528at 3724.278 kb on + strand, within MPMX20_03528at 3724.310 kb on + strand, within MPMX20_03528at 3724.330 kb on - strand, within MPMX20_03528at 3724.331 kb on - strand, within MPMX20_03528

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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3,722,015 - MPMX20_03525 0.39 +0.1
3,722,024 + MPMX20_03525 0.39 -1.4
3,722,032 + MPMX20_03525 0.40 -3.0
3,722,032 - MPMX20_03525 0.40 +0.7
3,722,055 + MPMX20_03525 0.42 -1.8
3,722,063 - MPMX20_03525 0.43 -2.8
3,722,131 - MPMX20_03525 0.48 +0.7
3,722,187 + MPMX20_03525 0.53 -1.2
3,722,199 + MPMX20_03525 0.54 +0.2
3,722,205 - MPMX20_03525 0.55 +1.0
3,722,214 + MPMX20_03525 0.55 -1.9
3,722,375 + MPMX20_03525 0.69 +1.1
3,722,383 - MPMX20_03525 0.69 -1.2
3,722,447 - MPMX20_03525 0.75 -0.1
3,722,481 + MPMX20_03525 0.78 -0.4
3,722,528 - MPMX20_03525 0.81 +1.1
3,722,535 - MPMX20_03525 0.82 +0.7
3,722,544 + MPMX20_03525 0.83 -1.6
3,722,544 + MPMX20_03525 0.83 -0.4
3,722,544 + MPMX20_03525 0.83 -1.3
3,722,544 + MPMX20_03525 0.83 -0.1
3,722,568 - MPMX20_03525 0.85 -0.2
3,722,598 + MPMX20_03525 0.87 -0.0
3,722,598 + MPMX20_03525 0.87 +1.0
3,722,598 + MPMX20_03525 0.87 -1.2
3,722,603 + MPMX20_03525 0.88 +0.6
3,722,603 + MPMX20_03525 0.88 -0.8
3,722,606 - MPMX20_03525 0.88 -1.0
3,722,611 - MPMX20_03525 0.88 -0.6
3,722,623 - MPMX20_03525 0.89 -0.3
3,722,641 - -0.7
3,722,641 - -0.5
3,722,669 + -0.6
3,722,677 - +0.3
3,722,677 - -0.9
3,722,696 + -1.4
3,722,722 - -1.0
3,722,752 - +0.2
3,722,757 - +1.3
3,722,790 - +1.0
3,722,800 - -0.5
3,722,801 - -0.8
3,722,820 + -0.6
3,722,830 + +0.1
3,722,830 + -0.5
3,722,830 + +0.5
3,722,838 - -0.4
3,722,858 + -2.1
3,722,866 - +0.1
3,723,037 + MPMX20_03526 0.27 -0.6
3,723,045 - MPMX20_03526 0.29 -0.0
3,723,098 - MPMX20_03526 0.41 +4.6
3,723,098 - MPMX20_03526 0.41 -1.4
3,723,105 + MPMX20_03526 0.43 -1.1
3,723,119 + MPMX20_03526 0.46 -0.4
3,723,120 + MPMX20_03526 0.46 -2.3
3,723,125 + MPMX20_03526 0.48 -1.0
3,723,128 - MPMX20_03526 0.48 -0.3
3,723,214 + MPMX20_03526 0.69 +1.6
3,723,258 - MPMX20_03526 0.79 +0.5
3,723,282 - MPMX20_03526 0.85 -1.8
3,723,305 - +0.9
3,723,309 + -1.2
3,723,419 + MPMX20_03527 0.13 -1.5
3,723,468 + MPMX20_03527 0.20 -0.7
3,723,543 + MPMX20_03527 0.30 -0.3
3,723,580 + MPMX20_03527 0.34 +0.2
3,723,588 - MPMX20_03527 0.35 -0.6
3,723,588 - MPMX20_03527 0.35 -0.7
3,723,588 - MPMX20_03527 0.35 -0.9
3,723,677 + MPMX20_03527 0.47 +0.5
3,723,683 - MPMX20_03527 0.48 -1.6
3,723,702 + MPMX20_03527 0.50 -2.1
3,723,812 + MPMX20_03527 0.65 -0.9
3,723,875 + MPMX20_03527 0.73 +0.3
3,723,890 + MPMX20_03527 0.75 -0.5
3,723,903 - MPMX20_03527 0.77 -0.4
3,723,931 + MPMX20_03527 0.81 -1.3
3,723,931 + MPMX20_03527 0.81 +1.1
3,724,024 + +2.1
3,724,032 + -0.2
3,724,113 + -0.2
3,724,141 + +2.0
3,724,144 + +2.7
3,724,152 - +0.9
3,724,165 - +0.3
3,724,166 + +0.2
3,724,268 + MPMX20_03528 0.29 -0.0
3,724,278 + MPMX20_03528 0.31 -0.5
3,724,278 + MPMX20_03528 0.31 -0.6
3,724,310 + MPMX20_03528 0.39 -0.5
3,724,330 - MPMX20_03528 0.44 +0.7
3,724,331 - MPMX20_03528 0.44 -0.6

Or see this region's nucleotide sequence