Experiment: Gly-DL-Asp (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00192 and MPMX20_00193 are separated by 10 nucleotides MPMX20_00193 and MPMX20_00194 overlap by 4 nucleotides MPMX20_00194 and MPMX20_00195 are separated by 50 nucleotides
MPMX20_00192: MPMX20_00192 - Dipeptide transport system permease protein DppC, at 201,176 to 202,078
_00192
MPMX20_00193: MPMX20_00193 - Dipeptide transport ATP-binding protein DppD, at 202,089 to 203,072
_00193
MPMX20_00194: MPMX20_00194 - Vitamin B12 import ATP-binding protein BtuD, at 203,069 to 204,082
_00194
MPMX20_00195: MPMX20_00195 - Pantothenate kinase, at 204,133 to 205,059
_00195
Position (kb)
203
204
205 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 202.143 kb on + strand at 202.174 kb on + strand at 202.182 kb on - strand at 202.184 kb on + strand at 202.288 kb on + strand, within MPMX20_00193 at 202.288 kb on + strand, within MPMX20_00193 at 202.302 kb on + strand, within MPMX20_00193 at 202.311 kb on - strand, within MPMX20_00193 at 202.388 kb on - strand, within MPMX20_00193 at 202.390 kb on + strand, within MPMX20_00193 at 202.390 kb on + strand, within MPMX20_00193 at 202.398 kb on - strand, within MPMX20_00193 at 202.532 kb on - strand, within MPMX20_00193 at 202.566 kb on - strand, within MPMX20_00193 at 202.566 kb on - strand, within MPMX20_00193 at 202.700 kb on - strand, within MPMX20_00193 at 202.723 kb on - strand, within MPMX20_00193 at 202.734 kb on - strand, within MPMX20_00193 at 202.739 kb on + strand, within MPMX20_00193 at 202.776 kb on + strand, within MPMX20_00193 at 202.784 kb on - strand, within MPMX20_00193 at 202.784 kb on - strand, within MPMX20_00193 at 202.839 kb on - strand, within MPMX20_00193 at 202.874 kb on + strand, within MPMX20_00193 at 202.877 kb on - strand, within MPMX20_00193 at 202.877 kb on - strand, within MPMX20_00193 at 202.882 kb on - strand, within MPMX20_00193 at 202.904 kb on - strand, within MPMX20_00193 at 202.929 kb on + strand, within MPMX20_00193 at 202.929 kb on + strand, within MPMX20_00193 at 202.979 kb on - strand at 202.979 kb on - strand at 202.998 kb on - strand at 203.041 kb on - strand at 203.059 kb on + strand at 203.152 kb on + strand at 203.175 kb on - strand, within MPMX20_00194 at 203.201 kb on - strand, within MPMX20_00194 at 203.243 kb on - strand, within MPMX20_00194 at 203.323 kb on - strand, within MPMX20_00194 at 203.326 kb on + strand, within MPMX20_00194 at 203.326 kb on + strand, within MPMX20_00194 at 203.333 kb on - strand, within MPMX20_00194 at 203.334 kb on - strand, within MPMX20_00194 at 203.346 kb on + strand, within MPMX20_00194 at 203.604 kb on + strand, within MPMX20_00194 at 203.604 kb on + strand, within MPMX20_00194 at 203.632 kb on + strand, within MPMX20_00194 at 203.697 kb on + strand, within MPMX20_00194 at 203.703 kb on - strand, within MPMX20_00194 at 203.705 kb on - strand, within MPMX20_00194 at 203.787 kb on + strand, within MPMX20_00194 at 203.792 kb on + strand, within MPMX20_00194 at 203.795 kb on - strand, within MPMX20_00194 at 203.833 kb on + strand, within MPMX20_00194 at 203.841 kb on - strand, within MPMX20_00194 at 203.936 kb on + strand, within MPMX20_00194 at 203.936 kb on + strand, within MPMX20_00194 at 203.944 kb on - strand, within MPMX20_00194 at 203.973 kb on + strand, within MPMX20_00194 at 204.004 kb on + strand at 204.012 kb on - strand at 204.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (N) remove 202,143 + +0.6 202,174 + -2.0 202,182 - +0.9 202,184 + -1.1 202,288 + MPMX20_00193 0.20 -1.3 202,288 + MPMX20_00193 0.20 -1.8 202,302 + MPMX20_00193 0.22 -2.0 202,311 - MPMX20_00193 0.23 -1.8 202,388 - MPMX20_00193 0.30 -1.1 202,390 + MPMX20_00193 0.31 -1.6 202,390 + MPMX20_00193 0.31 -2.4 202,398 - MPMX20_00193 0.31 +1.3 202,532 - MPMX20_00193 0.45 +0.0 202,566 - MPMX20_00193 0.48 -2.1 202,566 - MPMX20_00193 0.48 -1.5 202,700 - MPMX20_00193 0.62 -0.5 202,723 - MPMX20_00193 0.64 -0.7 202,734 - MPMX20_00193 0.66 -1.9 202,739 + MPMX20_00193 0.66 -0.6 202,776 + MPMX20_00193 0.70 +1.7 202,784 - MPMX20_00193 0.71 -1.6 202,784 - MPMX20_00193 0.71 -0.9 202,839 - MPMX20_00193 0.76 -1.0 202,874 + MPMX20_00193 0.80 -2.3 202,877 - MPMX20_00193 0.80 -1.1 202,877 - MPMX20_00193 0.80 -0.9 202,882 - MPMX20_00193 0.81 +0.1 202,904 - MPMX20_00193 0.83 -1.6 202,929 + MPMX20_00193 0.85 -1.4 202,929 + MPMX20_00193 0.85 -0.8 202,979 - +0.1 202,979 - -3.4 202,998 - -1.2 203,041 - -1.1 203,059 + -1.1 203,152 + -1.1 203,175 - MPMX20_00194 0.10 -1.2 203,201 - MPMX20_00194 0.13 -2.8 203,243 - MPMX20_00194 0.17 -1.5 203,323 - MPMX20_00194 0.25 -0.8 203,326 + MPMX20_00194 0.25 -0.3 203,326 + MPMX20_00194 0.25 -0.2 203,333 - MPMX20_00194 0.26 -3.1 203,334 - MPMX20_00194 0.26 +0.5 203,346 + MPMX20_00194 0.27 -1.9 203,604 + MPMX20_00194 0.53 -2.1 203,604 + MPMX20_00194 0.53 -0.7 203,632 + MPMX20_00194 0.56 -0.0 203,697 + MPMX20_00194 0.62 -2.4 203,703 - MPMX20_00194 0.63 -0.7 203,705 - MPMX20_00194 0.63 -1.7 203,787 + MPMX20_00194 0.71 +0.3 203,792 + MPMX20_00194 0.71 -0.5 203,795 - MPMX20_00194 0.72 -1.4 203,833 + MPMX20_00194 0.75 -1.7 203,841 - MPMX20_00194 0.76 -3.6 203,936 + MPMX20_00194 0.86 -2.1 203,936 + MPMX20_00194 0.86 -1.0 203,944 - MPMX20_00194 0.86 -1.0 203,973 + MPMX20_00194 0.89 -0.5 204,004 + -0.7 204,012 - -2.5 204,052 + +1.1
Or see this region's nucleotide sequence