Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02812

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02811 and MPMX20_02812 are separated by 49 nucleotidesMPMX20_02812 and MPMX20_02813 are separated by 343 nucleotides MPMX20_02811: MPMX20_02811 - Anaerobic C4-dicarboxylate transporter DcuB, at 2,969,433 to 2,970,776 _02811 MPMX20_02812: MPMX20_02812 - hypothetical protein, at 2,970,826 to 2,971,077 _02812 MPMX20_02813: MPMX20_02813 - hypothetical protein, at 2,971,421 to 2,972,059 _02813 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2969.881 kb on - strand, within MPMX20_02811at 2969.915 kb on + strand, within MPMX20_02811at 2969.964 kb on + strand, within MPMX20_02811at 2969.976 kb on + strand, within MPMX20_02811at 2969.976 kb on - strand, within MPMX20_02811at 2970.007 kb on - strand, within MPMX20_02811at 2970.024 kb on + strand, within MPMX20_02811at 2970.034 kb on + strand, within MPMX20_02811at 2970.035 kb on + strand, within MPMX20_02811at 2970.071 kb on - strand, within MPMX20_02811at 2970.083 kb on + strand, within MPMX20_02811at 2970.190 kb on - strand, within MPMX20_02811at 2970.193 kb on + strand, within MPMX20_02811at 2970.193 kb on + strand, within MPMX20_02811at 2970.196 kb on - strand, within MPMX20_02811at 2970.201 kb on - strand, within MPMX20_02811at 2970.201 kb on - strand, within MPMX20_02811at 2970.201 kb on - strand, within MPMX20_02811at 2970.201 kb on - strand, within MPMX20_02811at 2970.201 kb on - strand, within MPMX20_02811at 2970.317 kb on - strand, within MPMX20_02811at 2970.349 kb on - strand, within MPMX20_02811at 2970.384 kb on + strand, within MPMX20_02811at 2970.423 kb on - strand, within MPMX20_02811at 2970.424 kb on + strand, within MPMX20_02811at 2970.425 kb on + strand, within MPMX20_02811at 2970.432 kb on - strand, within MPMX20_02811at 2970.438 kb on + strand, within MPMX20_02811at 2970.641 kb on - strand, within MPMX20_02811at 2970.648 kb on + strandat 2970.651 kb on - strandat 2970.656 kb on - strandat 2970.656 kb on - strandat 2970.700 kb on + strandat 2970.708 kb on - strandat 2970.736 kb on + strandat 2970.741 kb on + strandat 2970.741 kb on - strandat 2970.770 kb on + strandat 2970.770 kb on + strandat 2970.778 kb on - strandat 2970.778 kb on - strandat 2970.778 kb on - strandat 2970.778 kb on - strandat 2970.780 kb on + strandat 2970.831 kb on - strandat 2970.833 kb on + strandat 2970.885 kb on - strand, within MPMX20_02812at 2970.988 kb on + strand, within MPMX20_02812at 2970.996 kb on - strand, within MPMX20_02812at 2971.048 kb on + strand, within MPMX20_02812at 2971.058 kb on + strandat 2971.066 kb on - strandat 2971.132 kb on + strandat 2971.229 kb on - strandat 2971.229 kb on - strandat 2971.424 kb on + strandat 2971.424 kb on + strandat 2971.432 kb on - strandat 2971.432 kb on - strandat 2971.432 kb on - strandat 2971.522 kb on + strand, within MPMX20_02813at 2971.560 kb on + strand, within MPMX20_02813at 2971.575 kb on + strand, within MPMX20_02813at 2971.583 kb on - strand, within MPMX20_02813at 2971.586 kb on + strand, within MPMX20_02813at 2971.631 kb on + strand, within MPMX20_02813at 2971.685 kb on + strand, within MPMX20_02813at 2971.690 kb on + strand, within MPMX20_02813at 2971.690 kb on + strand, within MPMX20_02813at 2971.693 kb on - strand, within MPMX20_02813at 2971.711 kb on - strand, within MPMX20_02813at 2971.801 kb on + strand, within MPMX20_02813at 2971.840 kb on - strand, within MPMX20_02813at 2971.840 kb on - strand, within MPMX20_02813at 2971.845 kb on - strand, within MPMX20_02813at 2971.917 kb on - strand, within MPMX20_02813at 2971.919 kb on + strand, within MPMX20_02813at 2971.919 kb on + strand, within MPMX20_02813at 2971.919 kb on + strand, within MPMX20_02813at 2971.920 kb on - strand, within MPMX20_02813at 2971.921 kb on - strand, within MPMX20_02813at 2971.924 kb on + strand, within MPMX20_02813at 2971.927 kb on - strand, within MPMX20_02813at 2971.970 kb on + strand, within MPMX20_02813at 2971.989 kb on + strand, within MPMX20_02813at 2972.033 kb on - strandat 2972.033 kb on - strandat 2972.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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2,969,881 - MPMX20_02811 0.33 +0.7
2,969,915 + MPMX20_02811 0.36 -0.1
2,969,964 + MPMX20_02811 0.40 +0.3
2,969,976 + MPMX20_02811 0.40 -1.4
2,969,976 - MPMX20_02811 0.40 -0.1
2,970,007 - MPMX20_02811 0.43 +0.1
2,970,024 + MPMX20_02811 0.44 -0.9
2,970,034 + MPMX20_02811 0.45 +1.0
2,970,035 + MPMX20_02811 0.45 -0.1
2,970,071 - MPMX20_02811 0.47 +0.1
2,970,083 + MPMX20_02811 0.48 +0.2
2,970,190 - MPMX20_02811 0.56 +0.4
2,970,193 + MPMX20_02811 0.57 -0.9
2,970,193 + MPMX20_02811 0.57 +0.0
2,970,196 - MPMX20_02811 0.57 -0.2
2,970,201 - MPMX20_02811 0.57 -2.9
2,970,201 - MPMX20_02811 0.57 -1.8
2,970,201 - MPMX20_02811 0.57 -1.5
2,970,201 - MPMX20_02811 0.57 -0.2
2,970,201 - MPMX20_02811 0.57 -1.3
2,970,317 - MPMX20_02811 0.66 -0.9
2,970,349 - MPMX20_02811 0.68 +0.4
2,970,384 + MPMX20_02811 0.71 +0.4
2,970,423 - MPMX20_02811 0.74 -2.5
2,970,424 + MPMX20_02811 0.74 +1.3
2,970,425 + MPMX20_02811 0.74 -1.2
2,970,432 - MPMX20_02811 0.74 -0.2
2,970,438 + MPMX20_02811 0.75 +0.6
2,970,641 - MPMX20_02811 0.90 -0.7
2,970,648 + -0.8
2,970,651 - +0.6
2,970,656 - -0.6
2,970,656 - -1.2
2,970,700 + -1.9
2,970,708 - -1.1
2,970,736 + -0.9
2,970,741 + -0.9
2,970,741 - -1.3
2,970,770 + -0.9
2,970,770 + +0.1
2,970,778 - -0.4
2,970,778 - +0.4
2,970,778 - -0.2
2,970,778 - -0.5
2,970,780 + +0.6
2,970,831 - -0.6
2,970,833 + +0.1
2,970,885 - MPMX20_02812 0.23 -1.3
2,970,988 + MPMX20_02812 0.64 -2.4
2,970,996 - MPMX20_02812 0.67 -1.7
2,971,048 + MPMX20_02812 0.88 -1.1
2,971,058 + -0.7
2,971,066 - +0.1
2,971,132 + -0.2
2,971,229 - -2.2
2,971,229 - -2.1
2,971,424 + +0.4
2,971,424 + -2.1
2,971,432 - -0.8
2,971,432 - -0.5
2,971,432 - +0.1
2,971,522 + MPMX20_02813 0.16 +1.1
2,971,560 + MPMX20_02813 0.22 -0.1
2,971,575 + MPMX20_02813 0.24 -1.4
2,971,583 - MPMX20_02813 0.25 +0.3
2,971,586 + MPMX20_02813 0.26 -1.3
2,971,631 + MPMX20_02813 0.33 -1.0
2,971,685 + MPMX20_02813 0.41 +0.7
2,971,690 + MPMX20_02813 0.42 -1.7
2,971,690 + MPMX20_02813 0.42 +1.6
2,971,693 - MPMX20_02813 0.43 -1.5
2,971,711 - MPMX20_02813 0.45 +2.1
2,971,801 + MPMX20_02813 0.59 -0.1
2,971,840 - MPMX20_02813 0.66 -1.3
2,971,840 - MPMX20_02813 0.66 +0.6
2,971,845 - MPMX20_02813 0.66 -1.4
2,971,917 - MPMX20_02813 0.78 -0.4
2,971,919 + MPMX20_02813 0.78 +0.3
2,971,919 + MPMX20_02813 0.78 -0.9
2,971,919 + MPMX20_02813 0.78 +0.3
2,971,920 - MPMX20_02813 0.78 -1.4
2,971,921 - MPMX20_02813 0.78 +0.2
2,971,924 + MPMX20_02813 0.79 -0.3
2,971,927 - MPMX20_02813 0.79 -0.5
2,971,970 + MPMX20_02813 0.86 -2.4
2,971,989 + MPMX20_02813 0.89 +0.1
2,972,033 - +0.1
2,972,033 - -0.6
2,972,045 - +0.6

Or see this region's nucleotide sequence