Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02768 and MPMX20_02769 are separated by 34 nucleotides MPMX20_02769 and MPMX20_02770 are separated by 27 nucleotides MPMX20_02770 and MPMX20_02771 are separated by 1 nucleotides
MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918
_02768
MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693
_02769
MPMX20_02770: MPMX20_02770 - Dihydroneopterin triphosphate diphosphatase, at 2,924,721 to 2,925,164
_02770
MPMX20_02771: MPMX20_02771 - Aspartate--tRNA ligase, at 2,925,166 to 2,926,953
_02771
Position (kb)
2924
2925
2926 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.902 kb on - strand at 2923.928 kb on + strand at 2924.203 kb on - strand, within MPMX20_02769 at 2924.317 kb on + strand, within MPMX20_02769 at 2924.414 kb on + strand, within MPMX20_02769 at 2924.421 kb on + strand, within MPMX20_02769 at 2924.527 kb on + strand, within MPMX20_02769 at 2924.535 kb on - strand, within MPMX20_02769 at 2924.577 kb on + strand, within MPMX20_02769 at 2924.577 kb on + strand, within MPMX20_02769 at 2924.650 kb on + strand at 2924.658 kb on - strand at 2924.668 kb on - strand at 2924.668 kb on - strand at 2924.780 kb on + strand, within MPMX20_02770 at 2924.783 kb on - strand, within MPMX20_02770 at 2924.788 kb on - strand, within MPMX20_02770 at 2924.788 kb on - strand, within MPMX20_02770 at 2924.944 kb on - strand, within MPMX20_02770 at 2924.962 kb on - strand, within MPMX20_02770 at 2924.989 kb on - strand, within MPMX20_02770 at 2925.041 kb on + strand, within MPMX20_02770 at 2925.041 kb on + strand, within MPMX20_02770 at 2925.049 kb on - strand, within MPMX20_02770 at 2925.049 kb on - strand, within MPMX20_02770 at 2925.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 2,923,783 - MPMX20_02768 0.74 -0.9 2,923,783 - MPMX20_02768 0.74 -1.4 2,923,902 - -1.4 2,923,928 + -2.2 2,924,203 - MPMX20_02769 0.34 +0.6 2,924,317 + MPMX20_02769 0.49 -1.2 2,924,414 + MPMX20_02769 0.62 -0.7 2,924,421 + MPMX20_02769 0.63 -2.6 2,924,527 + MPMX20_02769 0.77 +1.6 2,924,535 - MPMX20_02769 0.79 +0.6 2,924,577 + MPMX20_02769 0.84 +0.1 2,924,577 + MPMX20_02769 0.84 -2.4 2,924,650 + -2.0 2,924,658 - +0.3 2,924,668 - -2.4 2,924,668 - +0.2 2,924,780 + MPMX20_02770 0.13 -0.7 2,924,783 - MPMX20_02770 0.14 -0.4 2,924,788 - MPMX20_02770 0.15 -0.2 2,924,788 - MPMX20_02770 0.15 -4.2 2,924,944 - MPMX20_02770 0.50 -2.2 2,924,962 - MPMX20_02770 0.54 -2.4 2,924,989 - MPMX20_02770 0.60 -1.0 2,925,041 + MPMX20_02770 0.72 -2.0 2,925,041 + MPMX20_02770 0.72 -2.8 2,925,049 - MPMX20_02770 0.74 -1.5 2,925,049 - MPMX20_02770 0.74 -2.3 2,925,151 + +0.0
Or see this region's nucleotide sequence