Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02684 and MPMX20_02685 are separated by 17 nucleotides MPMX20_02685 and MPMX20_02686 overlap by 8 nucleotides MPMX20_02686 and MPMX20_02687 are separated by 165 nucleotides
MPMX20_02684: MPMX20_02684 - Hydrogen peroxide-inducible genes activator, at 2,835,630 to 2,836,532
_02684
MPMX20_02685: MPMX20_02685 - hypothetical protein, at 2,836,550 to 2,837,302
_02685
MPMX20_02686: MPMX20_02686 - hypothetical protein, at 2,837,295 to 2,838,266
_02686
MPMX20_02687: MPMX20_02687 - HTH-type transcriptional regulator CdhR, at 2,838,432 to 2,839,412
_02687
Position (kb)
2837
2838
2839 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2836.320 kb on + strand, within MPMX20_02684 at 2836.362 kb on + strand, within MPMX20_02684 at 2836.396 kb on + strand, within MPMX20_02684 at 2836.398 kb on - strand, within MPMX20_02684 at 2836.473 kb on - strand at 2836.514 kb on + strand at 2836.517 kb on + strand at 2836.522 kb on - strand at 2836.564 kb on - strand at 2836.574 kb on - strand at 2836.574 kb on - strand at 2836.574 kb on - strand at 2836.578 kb on + strand at 2836.590 kb on - strand at 2836.601 kb on + strand at 2836.629 kb on - strand, within MPMX20_02685 at 2836.671 kb on + strand, within MPMX20_02685 at 2836.679 kb on - strand, within MPMX20_02685 at 2836.694 kb on - strand, within MPMX20_02685 at 2836.740 kb on - strand, within MPMX20_02685 at 2836.755 kb on - strand, within MPMX20_02685 at 2836.781 kb on + strand, within MPMX20_02685 at 2836.832 kb on - strand, within MPMX20_02685 at 2836.959 kb on + strand, within MPMX20_02685 at 2836.972 kb on + strand, within MPMX20_02685 at 2837.145 kb on + strand, within MPMX20_02685 at 2837.148 kb on - strand, within MPMX20_02685 at 2837.148 kb on - strand, within MPMX20_02685 at 2837.165 kb on + strand, within MPMX20_02685 at 2837.168 kb on - strand, within MPMX20_02685 at 2837.215 kb on + strand, within MPMX20_02685 at 2837.220 kb on + strand, within MPMX20_02685 at 2837.225 kb on + strand, within MPMX20_02685 at 2837.233 kb on - strand at 2837.238 kb on + strand at 2837.297 kb on + strand at 2837.322 kb on + strand at 2837.377 kb on + strand at 2837.383 kb on + strand at 2837.385 kb on - strand at 2837.385 kb on - strand at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.518 kb on + strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.526 kb on - strand, within MPMX20_02686 at 2837.538 kb on + strand, within MPMX20_02686 at 2837.615 kb on + strand, within MPMX20_02686 at 2837.638 kb on + strand, within MPMX20_02686 at 2837.641 kb on - strand, within MPMX20_02686 at 2837.656 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.729 kb on + strand, within MPMX20_02686 at 2837.737 kb on - strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.755 kb on + strand, within MPMX20_02686 at 2837.871 kb on - strand, within MPMX20_02686 at 2837.927 kb on - strand, within MPMX20_02686 at 2837.960 kb on - strand, within MPMX20_02686 at 2837.960 kb on - strand, within MPMX20_02686 at 2837.997 kb on - strand, within MPMX20_02686 at 2838.031 kb on + strand, within MPMX20_02686 at 2838.045 kb on + strand, within MPMX20_02686 at 2838.081 kb on + strand, within MPMX20_02686 at 2838.481 kb on - strand at 2838.711 kb on - strand, within MPMX20_02687 at 2838.724 kb on - strand, within MPMX20_02687 at 2838.724 kb on - strand, within MPMX20_02687 at 2838.764 kb on - strand, within MPMX20_02687 at 2838.772 kb on + strand, within MPMX20_02687 at 2838.836 kb on + strand, within MPMX20_02687 at 2838.844 kb on - strand, within MPMX20_02687 at 2838.894 kb on + strand, within MPMX20_02687 at 2838.903 kb on + strand, within MPMX20_02687 at 2838.908 kb on + strand, within MPMX20_02687 at 2838.957 kb on - strand, within MPMX20_02687 at 2838.967 kb on - strand, within MPMX20_02687 at 2839.004 kb on + strand, within MPMX20_02687 at 2839.004 kb on + strand, within MPMX20_02687 at 2839.004 kb on + strand, within MPMX20_02687 at 2839.055 kb on + strand, within MPMX20_02687
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 2,836,320 + MPMX20_02684 0.76 -1.0 2,836,362 + MPMX20_02684 0.81 -2.6 2,836,396 + MPMX20_02684 0.85 -1.3 2,836,398 - MPMX20_02684 0.85 +0.0 2,836,473 - -0.6 2,836,514 + +1.6 2,836,517 + +0.0 2,836,522 - -1.7 2,836,564 - +0.6 2,836,574 - -0.6 2,836,574 - -2.0 2,836,574 - -0.3 2,836,578 + +0.0 2,836,590 - +0.4 2,836,601 + -1.6 2,836,629 - MPMX20_02685 0.10 +1.4 2,836,671 + MPMX20_02685 0.16 -0.7 2,836,679 - MPMX20_02685 0.17 +0.8 2,836,694 - MPMX20_02685 0.19 -2.4 2,836,740 - MPMX20_02685 0.25 +0.6 2,836,755 - MPMX20_02685 0.27 -1.2 2,836,781 + MPMX20_02685 0.31 +1.3 2,836,832 - MPMX20_02685 0.37 -0.8 2,836,959 + MPMX20_02685 0.54 +0.1 2,836,972 + MPMX20_02685 0.56 -1.4 2,837,145 + MPMX20_02685 0.79 -1.3 2,837,148 - MPMX20_02685 0.79 -1.2 2,837,148 - MPMX20_02685 0.79 +1.4 2,837,165 + MPMX20_02685 0.82 +0.9 2,837,168 - MPMX20_02685 0.82 -0.7 2,837,215 + MPMX20_02685 0.88 +2.6 2,837,220 + MPMX20_02685 0.89 +3.2 2,837,225 + MPMX20_02685 0.90 +0.3 2,837,233 - +0.2 2,837,238 + -0.1 2,837,297 + -0.4 2,837,322 + +0.3 2,837,377 + -0.3 2,837,383 + -0.6 2,837,385 - +0.5 2,837,385 - +1.3 2,837,518 + MPMX20_02686 0.23 -0.7 2,837,518 + MPMX20_02686 0.23 -1.6 2,837,518 + MPMX20_02686 0.23 -1.6 2,837,518 + MPMX20_02686 0.23 -2.2 2,837,526 - MPMX20_02686 0.24 +0.5 2,837,526 - MPMX20_02686 0.24 -0.9 2,837,526 - MPMX20_02686 0.24 +1.0 2,837,526 - MPMX20_02686 0.24 -2.3 2,837,538 + MPMX20_02686 0.25 -0.6 2,837,615 + MPMX20_02686 0.33 +0.1 2,837,638 + MPMX20_02686 0.35 -0.3 2,837,641 - MPMX20_02686 0.36 -0.3 2,837,656 + MPMX20_02686 0.37 -0.6 2,837,729 + MPMX20_02686 0.45 -0.5 2,837,729 + MPMX20_02686 0.45 -1.3 2,837,729 + MPMX20_02686 0.45 -2.0 2,837,729 + MPMX20_02686 0.45 -1.3 2,837,737 - MPMX20_02686 0.45 -0.2 2,837,755 + MPMX20_02686 0.47 -0.3 2,837,755 + MPMX20_02686 0.47 -0.9 2,837,755 + MPMX20_02686 0.47 -0.4 2,837,755 + MPMX20_02686 0.47 -0.4 2,837,871 - MPMX20_02686 0.59 +0.2 2,837,927 - MPMX20_02686 0.65 +0.8 2,837,960 - MPMX20_02686 0.68 -2.8 2,837,960 - MPMX20_02686 0.68 +1.3 2,837,997 - MPMX20_02686 0.72 -1.5 2,838,031 + MPMX20_02686 0.76 -0.4 2,838,045 + MPMX20_02686 0.77 -1.0 2,838,081 + MPMX20_02686 0.81 -0.6 2,838,481 - +0.9 2,838,711 - MPMX20_02687 0.28 -0.3 2,838,724 - MPMX20_02687 0.30 -0.2 2,838,724 - MPMX20_02687 0.30 +0.0 2,838,764 - MPMX20_02687 0.34 -0.3 2,838,772 + MPMX20_02687 0.35 -0.6 2,838,836 + MPMX20_02687 0.41 -1.8 2,838,844 - MPMX20_02687 0.42 -0.5 2,838,894 + MPMX20_02687 0.47 -0.4 2,838,903 + MPMX20_02687 0.48 -0.5 2,838,908 + MPMX20_02687 0.49 -0.4 2,838,957 - MPMX20_02687 0.54 +0.4 2,838,967 - MPMX20_02687 0.55 -1.0 2,839,004 + MPMX20_02687 0.58 -1.0 2,839,004 + MPMX20_02687 0.58 -2.6 2,839,004 + MPMX20_02687 0.58 -1.1 2,839,055 + MPMX20_02687 0.64 -1.6
Or see this region's nucleotide sequence