Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02554

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02552 and MPMX20_02553 are separated by 102 nucleotidesMPMX20_02553 and MPMX20_02554 are separated by 141 nucleotidesMPMX20_02554 and MPMX20_02555 are separated by 98 nucleotides MPMX20_02552: MPMX20_02552 - HTH-type transcriptional activator RhaR, at 2,689,787 to 2,690,668 _02552 MPMX20_02553: MPMX20_02553 - putative oxidoreductase, at 2,690,771 to 2,691,517 _02553 MPMX20_02554: MPMX20_02554 - putative oxidoreductase, at 2,691,659 to 2,692,381 _02554 MPMX20_02555: MPMX20_02555 - HTH-type transcriptional regulator PgrR, at 2,692,480 to 2,693,382 _02555 Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2690.663 kb on - strandat 2690.665 kb on - strandat 2690.667 kb on + strandat 2690.675 kb on - strandat 2690.677 kb on - strandat 2690.719 kb on + strandat 2690.767 kb on + strandat 2690.835 kb on + strandat 2690.843 kb on - strandat 2690.963 kb on + strand, within MPMX20_02553at 2690.963 kb on + strand, within MPMX20_02553at 2690.968 kb on + strand, within MPMX20_02553at 2690.971 kb on - strand, within MPMX20_02553at 2690.971 kb on - strand, within MPMX20_02553at 2690.975 kb on + strand, within MPMX20_02553at 2691.001 kb on - strand, within MPMX20_02553at 2691.003 kb on + strand, within MPMX20_02553at 2691.014 kb on - strand, within MPMX20_02553at 2691.034 kb on - strand, within MPMX20_02553at 2691.083 kb on - strand, within MPMX20_02553at 2691.135 kb on + strand, within MPMX20_02553at 2691.150 kb on - strand, within MPMX20_02553at 2691.159 kb on + strand, within MPMX20_02553at 2691.173 kb on - strand, within MPMX20_02553at 2691.187 kb on - strand, within MPMX20_02553at 2691.203 kb on + strand, within MPMX20_02553at 2691.218 kb on + strand, within MPMX20_02553at 2691.232 kb on - strand, within MPMX20_02553at 2691.283 kb on + strand, within MPMX20_02553at 2691.283 kb on + strand, within MPMX20_02553at 2691.293 kb on + strand, within MPMX20_02553at 2691.298 kb on - strand, within MPMX20_02553at 2691.340 kb on - strand, within MPMX20_02553at 2691.420 kb on - strand, within MPMX20_02553at 2691.442 kb on + strand, within MPMX20_02553at 2691.471 kb on - strandat 2691.477 kb on + strandat 2691.503 kb on + strandat 2691.503 kb on + strandat 2691.506 kb on - strandat 2691.506 kb on - strandat 2691.519 kb on - strandat 2691.530 kb on + strandat 2691.542 kb on + strandat 2691.561 kb on - strandat 2691.562 kb on - strandat 2691.562 kb on - strandat 2691.599 kb on - strandat 2691.599 kb on - strandat 2691.641 kb on + strandat 2691.647 kb on + strandat 2691.655 kb on - strandat 2691.679 kb on + strandat 2691.687 kb on - strandat 2691.771 kb on - strand, within MPMX20_02554at 2691.781 kb on + strand, within MPMX20_02554at 2691.782 kb on + strand, within MPMX20_02554at 2691.784 kb on - strand, within MPMX20_02554at 2691.784 kb on - strand, within MPMX20_02554at 2691.831 kb on + strand, within MPMX20_02554at 2691.835 kb on + strand, within MPMX20_02554at 2691.855 kb on - strand, within MPMX20_02554at 2691.909 kb on + strand, within MPMX20_02554at 2691.937 kb on - strand, within MPMX20_02554at 2691.950 kb on - strand, within MPMX20_02554at 2691.988 kb on + strand, within MPMX20_02554at 2691.996 kb on - strand, within MPMX20_02554at 2692.003 kb on - strand, within MPMX20_02554at 2692.065 kb on - strand, within MPMX20_02554at 2692.124 kb on - strand, within MPMX20_02554at 2692.148 kb on + strand, within MPMX20_02554at 2692.148 kb on + strand, within MPMX20_02554at 2692.156 kb on - strand, within MPMX20_02554at 2692.225 kb on - strand, within MPMX20_02554at 2692.225 kb on - strand, within MPMX20_02554at 2692.278 kb on - strand, within MPMX20_02554at 2692.298 kb on - strand, within MPMX20_02554at 2692.376 kb on + strandat 2692.386 kb on + strandat 2692.401 kb on + strandat 2692.401 kb on + strandat 2692.448 kb on + strandat 2692.450 kb on + strandat 2692.450 kb on + strandat 2692.458 kb on - strandat 2692.525 kb on + strandat 2692.619 kb on - strand, within MPMX20_02555at 2692.635 kb on + strand, within MPMX20_02555at 2692.646 kb on + strand, within MPMX20_02555at 2692.654 kb on - strand, within MPMX20_02555at 2692.753 kb on - strand, within MPMX20_02555at 2692.773 kb on + strand, within MPMX20_02555at 2692.803 kb on + strand, within MPMX20_02555at 2692.827 kb on + strand, within MPMX20_02555at 2692.904 kb on + strand, within MPMX20_02555at 2692.912 kb on - strand, within MPMX20_02555at 2692.970 kb on - strand, within MPMX20_02555at 2693.121 kb on - strand, within MPMX20_02555at 2693.166 kb on + strand, within MPMX20_02555at 2693.174 kb on - strand, within MPMX20_02555at 2693.216 kb on + strand, within MPMX20_02555at 2693.252 kb on - strand, within MPMX20_02555at 2693.284 kb on + strand, within MPMX20_02555at 2693.293 kb on - strandat 2693.340 kb on + strandat 2693.349 kb on + strandat 2693.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,690,663 - +1.0
2,690,665 - -1.6
2,690,667 + -1.3
2,690,675 - +1.5
2,690,677 - -0.5
2,690,719 + -0.5
2,690,767 + -0.9
2,690,835 + -0.7
2,690,843 - -0.2
2,690,963 + MPMX20_02553 0.26 +0.1
2,690,963 + MPMX20_02553 0.26 +0.7
2,690,968 + MPMX20_02553 0.26 +0.7
2,690,971 - MPMX20_02553 0.27 +0.1
2,690,971 - MPMX20_02553 0.27 -0.1
2,690,975 + MPMX20_02553 0.27 -1.7
2,691,001 - MPMX20_02553 0.31 -2.1
2,691,003 + MPMX20_02553 0.31 -1.0
2,691,014 - MPMX20_02553 0.33 -0.1
2,691,034 - MPMX20_02553 0.35 -0.1
2,691,083 - MPMX20_02553 0.42 -1.7
2,691,135 + MPMX20_02553 0.49 -0.4
2,691,150 - MPMX20_02553 0.51 -1.7
2,691,159 + MPMX20_02553 0.52 +0.8
2,691,173 - MPMX20_02553 0.54 -0.5
2,691,187 - MPMX20_02553 0.56 -1.5
2,691,203 + MPMX20_02553 0.58 +0.6
2,691,218 + MPMX20_02553 0.60 +0.1
2,691,232 - MPMX20_02553 0.62 -3.2
2,691,283 + MPMX20_02553 0.69 -1.7
2,691,283 + MPMX20_02553 0.69 +0.1
2,691,293 + MPMX20_02553 0.70 -1.5
2,691,298 - MPMX20_02553 0.71 +1.4
2,691,340 - MPMX20_02553 0.76 -0.8
2,691,420 - MPMX20_02553 0.87 +0.3
2,691,442 + MPMX20_02553 0.90 +2.3
2,691,471 - +1.2
2,691,477 + -1.7
2,691,503 + +1.1
2,691,503 + +0.1
2,691,506 - -0.9
2,691,506 - +0.4
2,691,519 - -1.2
2,691,530 + +1.9
2,691,542 + +0.6
2,691,561 - -1.5
2,691,562 - +1.9
2,691,562 - +1.0
2,691,599 - -1.6
2,691,599 - +0.5
2,691,641 + +0.2
2,691,647 + +0.7
2,691,655 - -2.0
2,691,679 + -2.3
2,691,687 - -0.4
2,691,771 - MPMX20_02554 0.15 -1.3
2,691,781 + MPMX20_02554 0.17 +1.4
2,691,782 + MPMX20_02554 0.17 -1.0
2,691,784 - MPMX20_02554 0.17 -1.3
2,691,784 - MPMX20_02554 0.17 -2.1
2,691,831 + MPMX20_02554 0.24 -0.4
2,691,835 + MPMX20_02554 0.24 +1.4
2,691,855 - MPMX20_02554 0.27 -1.1
2,691,909 + MPMX20_02554 0.35 -1.5
2,691,937 - MPMX20_02554 0.38 -0.7
2,691,950 - MPMX20_02554 0.40 -0.2
2,691,988 + MPMX20_02554 0.46 -1.4
2,691,996 - MPMX20_02554 0.47 -1.3
2,692,003 - MPMX20_02554 0.48 -0.9
2,692,065 - MPMX20_02554 0.56 -1.3
2,692,124 - MPMX20_02554 0.64 -0.3
2,692,148 + MPMX20_02554 0.68 -1.1
2,692,148 + MPMX20_02554 0.68 -1.4
2,692,156 - MPMX20_02554 0.69 -0.3
2,692,225 - MPMX20_02554 0.78 +0.0
2,692,225 - MPMX20_02554 0.78 -0.6
2,692,278 - MPMX20_02554 0.86 -2.9
2,692,298 - MPMX20_02554 0.88 -0.0
2,692,376 + +0.6
2,692,386 + +0.7
2,692,401 + -0.5
2,692,401 + +3.0
2,692,448 + -2.2
2,692,450 + -2.4
2,692,450 + -0.8
2,692,458 - -0.0
2,692,525 + -2.3
2,692,619 - MPMX20_02555 0.15 -0.3
2,692,635 + MPMX20_02555 0.17 -1.4
2,692,646 + MPMX20_02555 0.18 -0.8
2,692,654 - MPMX20_02555 0.19 +0.5
2,692,753 - MPMX20_02555 0.30 +0.3
2,692,773 + MPMX20_02555 0.32 -1.9
2,692,803 + MPMX20_02555 0.36 +1.0
2,692,827 + MPMX20_02555 0.38 +0.2
2,692,904 + MPMX20_02555 0.47 +0.4
2,692,912 - MPMX20_02555 0.48 -1.1
2,692,970 - MPMX20_02555 0.54 -3.0
2,693,121 - MPMX20_02555 0.71 +3.2
2,693,166 + MPMX20_02555 0.76 +1.5
2,693,174 - MPMX20_02555 0.77 -0.3
2,693,216 + MPMX20_02555 0.82 +0.5
2,693,252 - MPMX20_02555 0.85 -0.0
2,693,284 + MPMX20_02555 0.89 -0.2
2,693,293 - +1.5
2,693,340 + -0.3
2,693,349 + -0.5
2,693,367 - -3.2

Or see this region's nucleotide sequence