Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02552 and MPMX20_02553 are separated by 102 nucleotides MPMX20_02553 and MPMX20_02554 are separated by 141 nucleotides MPMX20_02554 and MPMX20_02555 are separated by 98 nucleotides
MPMX20_02552: MPMX20_02552 - HTH-type transcriptional activator RhaR, at 2,689,787 to 2,690,668
_02552
MPMX20_02553: MPMX20_02553 - putative oxidoreductase, at 2,690,771 to 2,691,517
_02553
MPMX20_02554: MPMX20_02554 - putative oxidoreductase, at 2,691,659 to 2,692,381
_02554
MPMX20_02555: MPMX20_02555 - HTH-type transcriptional regulator PgrR, at 2,692,480 to 2,693,382
_02555
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2690.663 kb on - strand at 2690.665 kb on - strand at 2690.667 kb on + strand at 2690.675 kb on - strand at 2690.677 kb on - strand at 2690.719 kb on + strand at 2690.767 kb on + strand at 2690.835 kb on + strand at 2690.843 kb on - strand at 2690.963 kb on + strand, within MPMX20_02553 at 2690.963 kb on + strand, within MPMX20_02553 at 2690.968 kb on + strand, within MPMX20_02553 at 2690.971 kb on - strand, within MPMX20_02553 at 2690.971 kb on - strand, within MPMX20_02553 at 2690.975 kb on + strand, within MPMX20_02553 at 2691.001 kb on - strand, within MPMX20_02553 at 2691.003 kb on + strand, within MPMX20_02553 at 2691.014 kb on - strand, within MPMX20_02553 at 2691.034 kb on - strand, within MPMX20_02553 at 2691.083 kb on - strand, within MPMX20_02553 at 2691.135 kb on + strand, within MPMX20_02553 at 2691.150 kb on - strand, within MPMX20_02553 at 2691.159 kb on + strand, within MPMX20_02553 at 2691.173 kb on - strand, within MPMX20_02553 at 2691.187 kb on - strand, within MPMX20_02553 at 2691.203 kb on + strand, within MPMX20_02553 at 2691.218 kb on + strand, within MPMX20_02553 at 2691.232 kb on - strand, within MPMX20_02553 at 2691.283 kb on + strand, within MPMX20_02553 at 2691.283 kb on + strand, within MPMX20_02553 at 2691.293 kb on + strand, within MPMX20_02553 at 2691.298 kb on - strand, within MPMX20_02553 at 2691.340 kb on - strand, within MPMX20_02553 at 2691.420 kb on - strand, within MPMX20_02553 at 2691.442 kb on + strand, within MPMX20_02553 at 2691.471 kb on - strand at 2691.477 kb on + strand at 2691.503 kb on + strand at 2691.503 kb on + strand at 2691.506 kb on - strand at 2691.506 kb on - strand at 2691.519 kb on - strand at 2691.530 kb on + strand at 2691.542 kb on + strand at 2691.561 kb on - strand at 2691.562 kb on - strand at 2691.562 kb on - strand at 2691.599 kb on - strand at 2691.599 kb on - strand at 2691.641 kb on + strand at 2691.647 kb on + strand at 2691.655 kb on - strand at 2691.679 kb on + strand at 2691.687 kb on - strand at 2691.771 kb on - strand, within MPMX20_02554 at 2691.781 kb on + strand, within MPMX20_02554 at 2691.782 kb on + strand, within MPMX20_02554 at 2691.784 kb on - strand, within MPMX20_02554 at 2691.784 kb on - strand, within MPMX20_02554 at 2691.831 kb on + strand, within MPMX20_02554 at 2691.835 kb on + strand, within MPMX20_02554 at 2691.855 kb on - strand, within MPMX20_02554 at 2691.909 kb on + strand, within MPMX20_02554 at 2691.937 kb on - strand, within MPMX20_02554 at 2691.950 kb on - strand, within MPMX20_02554 at 2691.988 kb on + strand, within MPMX20_02554 at 2691.996 kb on - strand, within MPMX20_02554 at 2692.003 kb on - strand, within MPMX20_02554 at 2692.065 kb on - strand, within MPMX20_02554 at 2692.124 kb on - strand, within MPMX20_02554 at 2692.148 kb on + strand, within MPMX20_02554 at 2692.148 kb on + strand, within MPMX20_02554 at 2692.156 kb on - strand, within MPMX20_02554 at 2692.225 kb on - strand, within MPMX20_02554 at 2692.225 kb on - strand, within MPMX20_02554 at 2692.278 kb on - strand, within MPMX20_02554 at 2692.298 kb on - strand, within MPMX20_02554 at 2692.376 kb on + strand at 2692.386 kb on + strand at 2692.401 kb on + strand at 2692.401 kb on + strand at 2692.448 kb on + strand at 2692.450 kb on + strand at 2692.450 kb on + strand at 2692.458 kb on - strand at 2692.525 kb on + strand at 2692.619 kb on - strand, within MPMX20_02555 at 2692.635 kb on + strand, within MPMX20_02555 at 2692.646 kb on + strand, within MPMX20_02555 at 2692.654 kb on - strand, within MPMX20_02555 at 2692.753 kb on - strand, within MPMX20_02555 at 2692.773 kb on + strand, within MPMX20_02555 at 2692.803 kb on + strand, within MPMX20_02555 at 2692.827 kb on + strand, within MPMX20_02555 at 2692.904 kb on + strand, within MPMX20_02555 at 2692.912 kb on - strand, within MPMX20_02555 at 2692.970 kb on - strand, within MPMX20_02555 at 2693.121 kb on - strand, within MPMX20_02555 at 2693.166 kb on + strand, within MPMX20_02555 at 2693.174 kb on - strand, within MPMX20_02555 at 2693.216 kb on + strand, within MPMX20_02555 at 2693.252 kb on - strand, within MPMX20_02555 at 2693.284 kb on + strand, within MPMX20_02555 at 2693.293 kb on - strand at 2693.340 kb on + strand at 2693.349 kb on + strand at 2693.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 2,690,663 - +1.0 2,690,665 - -1.6 2,690,667 + -1.3 2,690,675 - +1.5 2,690,677 - -0.5 2,690,719 + -0.5 2,690,767 + -0.9 2,690,835 + -0.7 2,690,843 - -0.2 2,690,963 + MPMX20_02553 0.26 +0.1 2,690,963 + MPMX20_02553 0.26 +0.7 2,690,968 + MPMX20_02553 0.26 +0.7 2,690,971 - MPMX20_02553 0.27 +0.1 2,690,971 - MPMX20_02553 0.27 -0.1 2,690,975 + MPMX20_02553 0.27 -1.7 2,691,001 - MPMX20_02553 0.31 -2.1 2,691,003 + MPMX20_02553 0.31 -1.0 2,691,014 - MPMX20_02553 0.33 -0.1 2,691,034 - MPMX20_02553 0.35 -0.1 2,691,083 - MPMX20_02553 0.42 -1.7 2,691,135 + MPMX20_02553 0.49 -0.4 2,691,150 - MPMX20_02553 0.51 -1.7 2,691,159 + MPMX20_02553 0.52 +0.8 2,691,173 - MPMX20_02553 0.54 -0.5 2,691,187 - MPMX20_02553 0.56 -1.5 2,691,203 + MPMX20_02553 0.58 +0.6 2,691,218 + MPMX20_02553 0.60 +0.1 2,691,232 - MPMX20_02553 0.62 -3.2 2,691,283 + MPMX20_02553 0.69 -1.7 2,691,283 + MPMX20_02553 0.69 +0.1 2,691,293 + MPMX20_02553 0.70 -1.5 2,691,298 - MPMX20_02553 0.71 +1.4 2,691,340 - MPMX20_02553 0.76 -0.8 2,691,420 - MPMX20_02553 0.87 +0.3 2,691,442 + MPMX20_02553 0.90 +2.3 2,691,471 - +1.2 2,691,477 + -1.7 2,691,503 + +1.1 2,691,503 + +0.1 2,691,506 - -0.9 2,691,506 - +0.4 2,691,519 - -1.2 2,691,530 + +1.9 2,691,542 + +0.6 2,691,561 - -1.5 2,691,562 - +1.9 2,691,562 - +1.0 2,691,599 - -1.6 2,691,599 - +0.5 2,691,641 + +0.2 2,691,647 + +0.7 2,691,655 - -2.0 2,691,679 + -2.3 2,691,687 - -0.4 2,691,771 - MPMX20_02554 0.15 -1.3 2,691,781 + MPMX20_02554 0.17 +1.4 2,691,782 + MPMX20_02554 0.17 -1.0 2,691,784 - MPMX20_02554 0.17 -1.3 2,691,784 - MPMX20_02554 0.17 -2.1 2,691,831 + MPMX20_02554 0.24 -0.4 2,691,835 + MPMX20_02554 0.24 +1.4 2,691,855 - MPMX20_02554 0.27 -1.1 2,691,909 + MPMX20_02554 0.35 -1.5 2,691,937 - MPMX20_02554 0.38 -0.7 2,691,950 - MPMX20_02554 0.40 -0.2 2,691,988 + MPMX20_02554 0.46 -1.4 2,691,996 - MPMX20_02554 0.47 -1.3 2,692,003 - MPMX20_02554 0.48 -0.9 2,692,065 - MPMX20_02554 0.56 -1.3 2,692,124 - MPMX20_02554 0.64 -0.3 2,692,148 + MPMX20_02554 0.68 -1.1 2,692,148 + MPMX20_02554 0.68 -1.4 2,692,156 - MPMX20_02554 0.69 -0.3 2,692,225 - MPMX20_02554 0.78 +0.0 2,692,225 - MPMX20_02554 0.78 -0.6 2,692,278 - MPMX20_02554 0.86 -2.9 2,692,298 - MPMX20_02554 0.88 -0.0 2,692,376 + +0.6 2,692,386 + +0.7 2,692,401 + -0.5 2,692,401 + +3.0 2,692,448 + -2.2 2,692,450 + -2.4 2,692,450 + -0.8 2,692,458 - -0.0 2,692,525 + -2.3 2,692,619 - MPMX20_02555 0.15 -0.3 2,692,635 + MPMX20_02555 0.17 -1.4 2,692,646 + MPMX20_02555 0.18 -0.8 2,692,654 - MPMX20_02555 0.19 +0.5 2,692,753 - MPMX20_02555 0.30 +0.3 2,692,773 + MPMX20_02555 0.32 -1.9 2,692,803 + MPMX20_02555 0.36 +1.0 2,692,827 + MPMX20_02555 0.38 +0.2 2,692,904 + MPMX20_02555 0.47 +0.4 2,692,912 - MPMX20_02555 0.48 -1.1 2,692,970 - MPMX20_02555 0.54 -3.0 2,693,121 - MPMX20_02555 0.71 +3.2 2,693,166 + MPMX20_02555 0.76 +1.5 2,693,174 - MPMX20_02555 0.77 -0.3 2,693,216 + MPMX20_02555 0.82 +0.5 2,693,252 - MPMX20_02555 0.85 -0.0 2,693,284 + MPMX20_02555 0.89 -0.2 2,693,293 - +1.5 2,693,340 + -0.3 2,693,349 + -0.5 2,693,367 - -3.2
Or see this region's nucleotide sequence