Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04103

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04102 and MPMX20_04103 are separated by 13 nucleotidesMPMX20_04103 and MPMX20_04104 are separated by 14 nucleotidesMPMX20_04104 and MPMX20_04105 overlap by 4 nucleotides MPMX20_04102: MPMX20_04102 - Inner membrane protein YrbG, at 4,296,414 to 4,297,391 _04102 MPMX20_04103: MPMX20_04103 - Arabinose 5-phosphate isomerase KdsD, at 4,297,405 to 4,298,391 _04103 MPMX20_04104: MPMX20_04104 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 4,298,406 to 4,298,972 _04104 MPMX20_04105: MPMX20_04105 - Lipopolysaccharide export system protein LptC, at 4,298,969 to 4,299,544 _04105 Position (kb) 4297 4298 4299Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4296.458 kb on + strandat 4296.458 kb on + strandat 4296.461 kb on + strandat 4296.461 kb on + strandat 4296.469 kb on - strandat 4296.469 kb on - strandat 4296.469 kb on - strandat 4296.469 kb on - strandat 4296.490 kb on + strandat 4296.490 kb on + strandat 4296.498 kb on - strandat 4296.503 kb on - strandat 4296.519 kb on - strand, within MPMX20_04102at 4296.540 kb on + strand, within MPMX20_04102at 4296.543 kb on - strand, within MPMX20_04102at 4296.614 kb on - strand, within MPMX20_04102at 4296.636 kb on + strand, within MPMX20_04102at 4296.656 kb on - strand, within MPMX20_04102at 4296.664 kb on + strand, within MPMX20_04102at 4296.671 kb on - strand, within MPMX20_04102at 4296.672 kb on - strand, within MPMX20_04102at 4296.686 kb on - strand, within MPMX20_04102at 4296.750 kb on - strand, within MPMX20_04102at 4296.757 kb on - strand, within MPMX20_04102at 4296.793 kb on - strand, within MPMX20_04102at 4296.881 kb on - strand, within MPMX20_04102at 4296.881 kb on - strand, within MPMX20_04102at 4297.008 kb on - strand, within MPMX20_04102at 4297.050 kb on - strand, within MPMX20_04102at 4297.088 kb on + strand, within MPMX20_04102at 4297.144 kb on - strand, within MPMX20_04102at 4297.184 kb on - strand, within MPMX20_04102at 4297.185 kb on - strand, within MPMX20_04102at 4297.196 kb on + strand, within MPMX20_04102at 4297.204 kb on - strand, within MPMX20_04102at 4297.218 kb on + strand, within MPMX20_04102at 4297.277 kb on + strand, within MPMX20_04102at 4297.312 kb on + strandat 4297.323 kb on + strandat 4297.356 kb on + strandat 4297.361 kb on + strandat 4297.369 kb on - strandat 4297.385 kb on - strandat 4297.467 kb on - strandat 4297.474 kb on + strandat 4297.480 kb on + strandat 4297.488 kb on - strandat 4297.490 kb on + strandat 4297.498 kb on - strandat 4297.580 kb on + strand, within MPMX20_04103at 4297.580 kb on + strand, within MPMX20_04103at 4297.713 kb on + strand, within MPMX20_04103at 4297.713 kb on + strand, within MPMX20_04103at 4297.749 kb on + strand, within MPMX20_04103at 4297.829 kb on + strand, within MPMX20_04103at 4297.841 kb on + strand, within MPMX20_04103at 4297.855 kb on + strand, within MPMX20_04103at 4297.908 kb on + strand, within MPMX20_04103at 4297.916 kb on - strand, within MPMX20_04103at 4297.916 kb on - strand, within MPMX20_04103at 4297.952 kb on + strand, within MPMX20_04103at 4298.008 kb on - strand, within MPMX20_04103at 4298.014 kb on - strand, within MPMX20_04103at 4298.019 kb on + strand, within MPMX20_04103at 4298.037 kb on - strand, within MPMX20_04103at 4298.039 kb on + strand, within MPMX20_04103at 4298.049 kb on - strand, within MPMX20_04103at 4298.198 kb on + strand, within MPMX20_04103at 4298.198 kb on + strand, within MPMX20_04103at 4298.217 kb on + strand, within MPMX20_04103at 4298.217 kb on + strand, within MPMX20_04103at 4298.245 kb on - strand, within MPMX20_04103at 4298.262 kb on + strand, within MPMX20_04103at 4298.320 kb on - strandat 4298.348 kb on + strandat 4298.380 kb on + strandat 4298.380 kb on + strandat 4298.380 kb on + strandat 4298.386 kb on + strandat 4298.396 kb on + strandat 4298.396 kb on + strandat 4298.396 kb on + strandat 4298.437 kb on + strandat 4298.437 kb on + strandat 4298.452 kb on + strandat 4298.459 kb on + strandat 4298.494 kb on + strand, within MPMX20_04104at 4298.605 kb on + strand, within MPMX20_04104at 4298.680 kb on + strand, within MPMX20_04104at 4298.819 kb on + strand, within MPMX20_04104at 4298.821 kb on + strand, within MPMX20_04104at 4298.869 kb on + strand, within MPMX20_04104at 4298.951 kb on + strandat 4299.336 kb on + strand, within MPMX20_04105at 4299.373 kb on + strand, within MPMX20_04105at 4299.373 kb on + strand, within MPMX20_04105

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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4,296,458 + -0.1
4,296,458 + -0.5
4,296,461 + -0.5
4,296,461 + -0.2
4,296,469 - -1.0
4,296,469 - -0.4
4,296,469 - -0.2
4,296,469 - -0.4
4,296,490 + -0.1
4,296,490 + -0.6
4,296,498 - -0.6
4,296,503 - +1.5
4,296,519 - MPMX20_04102 0.11 +0.6
4,296,540 + MPMX20_04102 0.13 +0.5
4,296,543 - MPMX20_04102 0.13 +0.0
4,296,614 - MPMX20_04102 0.20 -0.6
4,296,636 + MPMX20_04102 0.23 -0.4
4,296,656 - MPMX20_04102 0.25 +0.4
4,296,664 + MPMX20_04102 0.26 +0.0
4,296,671 - MPMX20_04102 0.26 +0.1
4,296,672 - MPMX20_04102 0.26 -0.4
4,296,686 - MPMX20_04102 0.28 +0.1
4,296,750 - MPMX20_04102 0.34 +0.7
4,296,757 - MPMX20_04102 0.35 -1.1
4,296,793 - MPMX20_04102 0.39 -1.3
4,296,881 - MPMX20_04102 0.48 +0.9
4,296,881 - MPMX20_04102 0.48 +0.8
4,297,008 - MPMX20_04102 0.61 +0.4
4,297,050 - MPMX20_04102 0.65 +0.6
4,297,088 + MPMX20_04102 0.69 -0.2
4,297,144 - MPMX20_04102 0.75 +0.3
4,297,184 - MPMX20_04102 0.79 -1.1
4,297,185 - MPMX20_04102 0.79 -1.8
4,297,196 + MPMX20_04102 0.80 +0.6
4,297,204 - MPMX20_04102 0.81 -0.4
4,297,218 + MPMX20_04102 0.82 +0.9
4,297,277 + MPMX20_04102 0.88 +0.4
4,297,312 + -1.1
4,297,323 + -0.4
4,297,356 + +1.9
4,297,361 + +0.4
4,297,369 - -1.1
4,297,385 - +0.9
4,297,467 - +0.4
4,297,474 + -0.8
4,297,480 + +3.6
4,297,488 - -1.4
4,297,490 + -0.2
4,297,498 - -0.7
4,297,580 + MPMX20_04103 0.18 +0.2
4,297,580 + MPMX20_04103 0.18 -2.0
4,297,713 + MPMX20_04103 0.31 +1.5
4,297,713 + MPMX20_04103 0.31 -0.7
4,297,749 + MPMX20_04103 0.35 +0.6
4,297,829 + MPMX20_04103 0.43 +0.1
4,297,841 + MPMX20_04103 0.44 +1.0
4,297,855 + MPMX20_04103 0.46 -0.3
4,297,908 + MPMX20_04103 0.51 -0.0
4,297,916 - MPMX20_04103 0.52 -1.7
4,297,916 - MPMX20_04103 0.52 +0.4
4,297,952 + MPMX20_04103 0.55 -1.5
4,298,008 - MPMX20_04103 0.61 -0.1
4,298,014 - MPMX20_04103 0.62 -0.5
4,298,019 + MPMX20_04103 0.62 +0.6
4,298,037 - MPMX20_04103 0.64 +0.9
4,298,039 + MPMX20_04103 0.64 +2.4
4,298,049 - MPMX20_04103 0.65 +3.8
4,298,198 + MPMX20_04103 0.80 +1.3
4,298,198 + MPMX20_04103 0.80 +0.0
4,298,217 + MPMX20_04103 0.82 +2.2
4,298,217 + MPMX20_04103 0.82 -0.3
4,298,245 - MPMX20_04103 0.85 +1.0
4,298,262 + MPMX20_04103 0.87 +0.2
4,298,320 - +0.5
4,298,348 + +0.1
4,298,380 + -1.6
4,298,380 + +0.4
4,298,380 + +2.1
4,298,386 + +0.3
4,298,396 + -1.8
4,298,396 + +2.4
4,298,396 + -0.5
4,298,437 + +0.2
4,298,437 + +0.6
4,298,452 + +0.8
4,298,459 + +2.4
4,298,494 + MPMX20_04104 0.16 -0.7
4,298,605 + MPMX20_04104 0.35 +1.4
4,298,680 + MPMX20_04104 0.48 +0.2
4,298,819 + MPMX20_04104 0.73 +1.0
4,298,821 + MPMX20_04104 0.73 +0.2
4,298,869 + MPMX20_04104 0.82 +0.7
4,298,951 + +0.4
4,299,336 + MPMX20_04105 0.64 +0.8
4,299,373 + MPMX20_04105 0.70 +0.8
4,299,373 + MPMX20_04105 0.70 +0.9

Or see this region's nucleotide sequence