Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01708 and MPMX20_01709 are separated by 223 nucleotides MPMX20_01709 and MPMX20_01710 are separated by 298 nucleotides MPMX20_01710 and MPMX20_01711 are separated by 147 nucleotides
MPMX20_01708: MPMX20_01708 - Deferrochelatase/peroxidase EfeB, at 1,807,134 to 1,808,417
_01708
MPMX20_01709: MPMX20_01709 - Protein PhoH, at 1,808,641 to 1,809,705
_01709
MPMX20_01710: MPMX20_01710 - tRNA-Ser, at 1,810,004 to 1,810,091
_01710
MPMX20_01711: MPMX20_01711 - putative hydrolase YcaC, at 1,810,239 to 1,810,916
_01711
Position (kb)
1808
1809
1810 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1807.656 kb on + strand, within MPMX20_01708 at 1807.685 kb on + strand, within MPMX20_01708 at 1807.752 kb on - strand, within MPMX20_01708 at 1807.752 kb on - strand, within MPMX20_01708 at 1807.805 kb on + strand, within MPMX20_01708 at 1807.820 kb on - strand, within MPMX20_01708 at 1807.870 kb on + strand, within MPMX20_01708 at 1807.904 kb on + strand, within MPMX20_01708 at 1807.914 kb on + strand, within MPMX20_01708 at 1807.928 kb on + strand, within MPMX20_01708 at 1807.948 kb on - strand, within MPMX20_01708 at 1808.011 kb on - strand, within MPMX20_01708 at 1808.040 kb on - strand, within MPMX20_01708 at 1808.085 kb on + strand, within MPMX20_01708 at 1808.126 kb on - strand, within MPMX20_01708 at 1808.162 kb on + strand, within MPMX20_01708 at 1808.190 kb on + strand, within MPMX20_01708 at 1808.218 kb on + strand, within MPMX20_01708 at 1808.266 kb on + strand, within MPMX20_01708 at 1808.289 kb on + strand at 1808.297 kb on - strand at 1808.384 kb on + strand at 1808.392 kb on - strand at 1808.392 kb on - strand at 1808.514 kb on - strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.525 kb on + strand at 1808.533 kb on - strand at 1808.533 kb on - strand at 1808.571 kb on + strand at 1808.579 kb on - strand at 1808.579 kb on - strand at 1808.579 kb on - strand at 1808.589 kb on - strand at 1808.594 kb on - strand at 1808.594 kb on - strand at 1808.633 kb on - strand at 1808.654 kb on + strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.662 kb on - strand at 1808.665 kb on + strand at 1808.665 kb on + strand at 1808.698 kb on + strand at 1808.706 kb on - strand at 1808.706 kb on - strand at 1808.706 kb on - strand at 1808.778 kb on - strand, within MPMX20_01709 at 1808.836 kb on + strand, within MPMX20_01709 at 1808.843 kb on + strand, within MPMX20_01709 at 1808.859 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.987 kb on + strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1808.995 kb on - strand, within MPMX20_01709 at 1809.025 kb on + strand, within MPMX20_01709 at 1809.030 kb on + strand, within MPMX20_01709 at 1809.057 kb on + strand, within MPMX20_01709 at 1809.058 kb on + strand, within MPMX20_01709 at 1809.058 kb on + strand, within MPMX20_01709 at 1809.066 kb on - strand, within MPMX20_01709 at 1809.066 kb on - strand, within MPMX20_01709 at 1809.096 kb on + strand, within MPMX20_01709 at 1809.111 kb on - strand, within MPMX20_01709 at 1809.122 kb on - strand, within MPMX20_01709 at 1809.139 kb on - strand, within MPMX20_01709 at 1809.241 kb on - strand, within MPMX20_01709 at 1809.273 kb on + strand, within MPMX20_01709 at 1809.318 kb on + strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.326 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.337 kb on - strand, within MPMX20_01709 at 1809.350 kb on - strand, within MPMX20_01709 at 1809.362 kb on + strand, within MPMX20_01709 at 1809.369 kb on + strand, within MPMX20_01709 at 1809.372 kb on + strand, within MPMX20_01709 at 1809.372 kb on + strand, within MPMX20_01709 at 1809.375 kb on - strand, within MPMX20_01709 at 1809.407 kb on - strand, within MPMX20_01709 at 1809.466 kb on - strand, within MPMX20_01709 at 1809.548 kb on + strand, within MPMX20_01709 at 1809.556 kb on - strand, within MPMX20_01709 at 1809.556 kb on - strand, within MPMX20_01709 at 1809.574 kb on + strand, within MPMX20_01709 at 1809.574 kb on + strand, within MPMX20_01709 at 1809.589 kb on - strand, within MPMX20_01709 at 1809.594 kb on - strand, within MPMX20_01709 at 1809.619 kb on + strand at 1809.670 kb on + strand at 1809.686 kb on + strand at 1809.699 kb on + strand at 1810.135 kb on + strand at 1810.140 kb on + strand at 1810.143 kb on - strand at 1810.231 kb on - strand at 1810.250 kb on + strand at 1810.288 kb on + strand at 1810.288 kb on - strand at 1810.288 kb on - strand at 1810.288 kb on - strand at 1810.346 kb on - strand, within MPMX20_01711 at 1810.425 kb on + strand, within MPMX20_01711 at 1810.425 kb on + strand, within MPMX20_01711 at 1810.425 kb on + strand, within MPMX20_01711 at 1810.425 kb on + strand, within MPMX20_01711 at 1810.433 kb on - strand, within MPMX20_01711 at 1810.433 kb on - strand, within MPMX20_01711 at 1810.433 kb on - strand, within MPMX20_01711 at 1810.433 kb on - strand, within MPMX20_01711 at 1810.440 kb on + strand, within MPMX20_01711 at 1810.452 kb on + strand, within MPMX20_01711 at 1810.504 kb on + strand, within MPMX20_01711 at 1810.504 kb on + strand, within MPMX20_01711 at 1810.510 kb on - strand, within MPMX20_01711 at 1810.510 kb on - strand, within MPMX20_01711 at 1810.512 kb on - strand, within MPMX20_01711 at 1810.512 kb on - strand, within MPMX20_01711 at 1810.531 kb on - strand, within MPMX20_01711 at 1810.580 kb on - strand, within MPMX20_01711 at 1810.624 kb on + strand, within MPMX20_01711 at 1810.678 kb on + strand, within MPMX20_01711
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 1,807,656 + MPMX20_01708 0.41 -0.1 1,807,685 + MPMX20_01708 0.43 +0.0 1,807,752 - MPMX20_01708 0.48 +0.0 1,807,752 - MPMX20_01708 0.48 -0.1 1,807,805 + MPMX20_01708 0.52 +0.4 1,807,820 - MPMX20_01708 0.53 -0.9 1,807,870 + MPMX20_01708 0.57 -0.3 1,807,904 + MPMX20_01708 0.60 -0.4 1,807,914 + MPMX20_01708 0.61 -1.5 1,807,928 + MPMX20_01708 0.62 -0.2 1,807,948 - MPMX20_01708 0.63 +0.2 1,808,011 - MPMX20_01708 0.68 +0.5 1,808,040 - MPMX20_01708 0.71 -0.3 1,808,085 + MPMX20_01708 0.74 +1.1 1,808,126 - MPMX20_01708 0.77 -1.2 1,808,162 + MPMX20_01708 0.80 -1.0 1,808,190 + MPMX20_01708 0.82 -0.9 1,808,218 + MPMX20_01708 0.84 +0.2 1,808,266 + MPMX20_01708 0.88 +0.0 1,808,289 + -0.9 1,808,297 - +0.0 1,808,384 + +0.1 1,808,392 - -0.0 1,808,392 - -2.4 1,808,514 - -0.2 1,808,525 + +0.1 1,808,525 + -1.1 1,808,525 + -0.3 1,808,525 + +0.2 1,808,533 - -0.7 1,808,533 - -0.5 1,808,571 + -1.4 1,808,579 - -1.1 1,808,579 - -1.4 1,808,579 - -0.3 1,808,589 - -0.3 1,808,594 - -0.2 1,808,594 - -2.4 1,808,633 - -0.5 1,808,654 + -0.8 1,808,662 - -2.4 1,808,662 - -1.2 1,808,662 - -0.3 1,808,662 - -1.5 1,808,665 + -1.3 1,808,665 + -2.0 1,808,698 + +1.2 1,808,706 - -1.7 1,808,706 - -1.0 1,808,706 - -2.4 1,808,778 - MPMX20_01709 0.13 +0.2 1,808,836 + MPMX20_01709 0.18 -0.8 1,808,843 + MPMX20_01709 0.19 +0.4 1,808,859 + MPMX20_01709 0.20 -0.8 1,808,987 + MPMX20_01709 0.32 +0.7 1,808,987 + MPMX20_01709 0.32 -0.1 1,808,987 + MPMX20_01709 0.32 -1.3 1,808,987 + MPMX20_01709 0.32 -0.3 1,808,987 + MPMX20_01709 0.32 -0.2 1,808,987 + MPMX20_01709 0.32 -0.6 1,808,987 + MPMX20_01709 0.32 -0.9 1,808,987 + MPMX20_01709 0.32 -0.8 1,808,987 + MPMX20_01709 0.32 -2.3 1,808,987 + MPMX20_01709 0.32 +0.8 1,808,987 + MPMX20_01709 0.32 +0.8 1,808,987 + MPMX20_01709 0.32 -3.0 1,808,987 + MPMX20_01709 0.32 +0.0 1,808,995 - MPMX20_01709 0.33 -1.8 1,808,995 - MPMX20_01709 0.33 +0.1 1,808,995 - MPMX20_01709 0.33 +0.0 1,808,995 - MPMX20_01709 0.33 -1.0 1,808,995 - MPMX20_01709 0.33 -1.5 1,808,995 - MPMX20_01709 0.33 -1.4 1,808,995 - MPMX20_01709 0.33 -2.9 1,808,995 - MPMX20_01709 0.33 -0.2 1,809,025 + MPMX20_01709 0.36 -0.6 1,809,030 + MPMX20_01709 0.37 -0.8 1,809,057 + MPMX20_01709 0.39 -0.3 1,809,058 + MPMX20_01709 0.39 -2.4 1,809,058 + MPMX20_01709 0.39 -1.1 1,809,066 - MPMX20_01709 0.40 -0.7 1,809,066 - MPMX20_01709 0.40 -0.8 1,809,096 + MPMX20_01709 0.43 -1.9 1,809,111 - MPMX20_01709 0.44 -2.3 1,809,122 - MPMX20_01709 0.45 -0.8 1,809,139 - MPMX20_01709 0.47 -1.3 1,809,241 - MPMX20_01709 0.56 -0.3 1,809,273 + MPMX20_01709 0.59 -1.1 1,809,318 + MPMX20_01709 0.64 -1.2 1,809,326 - MPMX20_01709 0.64 -2.6 1,809,326 - MPMX20_01709 0.64 -2.5 1,809,326 - MPMX20_01709 0.64 -1.0 1,809,326 - MPMX20_01709 0.64 -2.1 1,809,337 - MPMX20_01709 0.65 -1.8 1,809,337 - MPMX20_01709 0.65 -1.0 1,809,337 - MPMX20_01709 0.65 -0.3 1,809,337 - MPMX20_01709 0.65 -0.5 1,809,350 - MPMX20_01709 0.67 -1.1 1,809,362 + MPMX20_01709 0.68 +0.8 1,809,369 + MPMX20_01709 0.68 -1.7 1,809,372 + MPMX20_01709 0.69 +0.3 1,809,372 + MPMX20_01709 0.69 -0.8 1,809,375 - MPMX20_01709 0.69 -0.7 1,809,407 - MPMX20_01709 0.72 -1.4 1,809,466 - MPMX20_01709 0.77 -2.1 1,809,548 + MPMX20_01709 0.85 -1.4 1,809,556 - MPMX20_01709 0.86 -1.0 1,809,556 - MPMX20_01709 0.86 +0.0 1,809,574 + MPMX20_01709 0.88 -0.9 1,809,574 + MPMX20_01709 0.88 -2.0 1,809,589 - MPMX20_01709 0.89 -3.1 1,809,594 - MPMX20_01709 0.89 -0.7 1,809,619 + -0.7 1,809,670 + -0.8 1,809,686 + +0.8 1,809,699 + +0.2 1,810,135 + -0.4 1,810,140 + +0.6 1,810,143 - +0.0 1,810,231 - -0.5 1,810,250 + -0.8 1,810,288 + -1.0 1,810,288 - -0.4 1,810,288 - -1.5 1,810,288 - -0.5 1,810,346 - MPMX20_01711 0.16 -0.8 1,810,425 + MPMX20_01711 0.27 +0.2 1,810,425 + MPMX20_01711 0.27 -1.2 1,810,425 + MPMX20_01711 0.27 +0.4 1,810,425 + MPMX20_01711 0.27 -1.1 1,810,433 - MPMX20_01711 0.29 +0.8 1,810,433 - MPMX20_01711 0.29 -0.1 1,810,433 - MPMX20_01711 0.29 -0.4 1,810,433 - MPMX20_01711 0.29 -0.5 1,810,440 + MPMX20_01711 0.30 -0.3 1,810,452 + MPMX20_01711 0.31 +2.6 1,810,504 + MPMX20_01711 0.39 -0.8 1,810,504 + MPMX20_01711 0.39 -1.0 1,810,510 - MPMX20_01711 0.40 +0.5 1,810,510 - MPMX20_01711 0.40 -0.8 1,810,512 - MPMX20_01711 0.40 -0.6 1,810,512 - MPMX20_01711 0.40 -1.4 1,810,531 - MPMX20_01711 0.43 -0.3 1,810,580 - MPMX20_01711 0.50 +0.7 1,810,624 + MPMX20_01711 0.57 -1.1 1,810,678 + MPMX20_01711 0.65 -0.1
Or see this region's nucleotide sequence