Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04555

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04553 and MPMX20_04554 are separated by 55 nucleotidesMPMX20_04554 and MPMX20_04555 overlap by 100 nucleotidesMPMX20_04555 and MPMX20_04556 are separated by 150 nucleotidesMPMX20_04556 and MPMX20_04557 overlap by 4 nucleotides MPMX20_04553: MPMX20_04553 - Ferrous-iron efflux pump FieF, at 4,766,125 to 4,767,018 _04553 MPMX20_04554: MPMX20_04554 - hypothetical protein, at 4,767,074 to 4,767,271 _04554 MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678 _04555 MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527 _04556 MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897 _04557 Position (kb) 4767 4768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4766.223 kb on + strand, within MPMX20_04553at 4766.228 kb on + strand, within MPMX20_04553at 4766.249 kb on + strand, within MPMX20_04553at 4766.249 kb on + strand, within MPMX20_04553at 4766.293 kb on + strand, within MPMX20_04553at 4766.298 kb on + strand, within MPMX20_04553at 4766.306 kb on - strand, within MPMX20_04553at 4766.330 kb on + strand, within MPMX20_04553at 4766.330 kb on + strand, within MPMX20_04553at 4766.332 kb on + strand, within MPMX20_04553at 4766.338 kb on - strand, within MPMX20_04553at 4766.342 kb on + strand, within MPMX20_04553at 4766.342 kb on + strand, within MPMX20_04553at 4766.358 kb on - strand, within MPMX20_04553at 4766.389 kb on - strand, within MPMX20_04553at 4766.398 kb on + strand, within MPMX20_04553at 4766.398 kb on + strand, within MPMX20_04553at 4766.398 kb on + strand, within MPMX20_04553at 4766.406 kb on - strand, within MPMX20_04553at 4766.406 kb on - strand, within MPMX20_04553at 4766.406 kb on - strand, within MPMX20_04553at 4766.406 kb on - strand, within MPMX20_04553at 4766.418 kb on + strand, within MPMX20_04553at 4766.431 kb on + strand, within MPMX20_04553at 4766.457 kb on + strand, within MPMX20_04553at 4766.494 kb on - strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.501 kb on + strand, within MPMX20_04553at 4766.509 kb on - strand, within MPMX20_04553at 4766.509 kb on - strand, within MPMX20_04553at 4766.509 kb on - strand, within MPMX20_04553at 4766.580 kb on - strand, within MPMX20_04553at 4766.609 kb on - strand, within MPMX20_04553at 4766.609 kb on - strand, within MPMX20_04553at 4766.609 kb on - strand, within MPMX20_04553at 4766.638 kb on + strand, within MPMX20_04553at 4766.649 kb on + strand, within MPMX20_04553at 4766.734 kb on - strand, within MPMX20_04553at 4766.808 kb on + strand, within MPMX20_04553at 4766.831 kb on + strand, within MPMX20_04553at 4766.836 kb on + strand, within MPMX20_04553at 4766.839 kb on - strand, within MPMX20_04553at 4766.844 kb on - strand, within MPMX20_04553at 4766.849 kb on - strand, within MPMX20_04553at 4766.851 kb on - strand, within MPMX20_04553at 4766.918 kb on + strand, within MPMX20_04553at 4766.918 kb on + strand, within MPMX20_04553at 4766.926 kb on - strand, within MPMX20_04553at 4766.926 kb on - strand, within MPMX20_04553at 4766.989 kb on + strandat 4767.022 kb on + strandat 4767.199 kb on - strandat 4767.280 kb on + strand, within MPMX20_04555at 4767.297 kb on + strand, within MPMX20_04555at 4767.367 kb on - strand, within MPMX20_04555at 4767.387 kb on + strand, within MPMX20_04555at 4767.396 kb on - strand, within MPMX20_04555at 4767.456 kb on + strand, within MPMX20_04555at 4767.464 kb on - strand, within MPMX20_04555at 4767.464 kb on - strand, within MPMX20_04555at 4767.543 kb on + strand, within MPMX20_04555at 4767.570 kb on - strand, within MPMX20_04555at 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.629 kb on - strandat 4767.663 kb on + strandat 4767.673 kb on + strandat 4767.757 kb on + strandat 4767.797 kb on - strandat 4768.026 kb on + strand, within MPMX20_04556at 4768.044 kb on - strand, within MPMX20_04556at 4768.068 kb on + strand, within MPMX20_04556at 4768.076 kb on + strand, within MPMX20_04556at 4768.084 kb on - strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.094 kb on + strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.102 kb on - strand, within MPMX20_04556at 4768.158 kb on + strand, within MPMX20_04556at 4768.168 kb on + strand, within MPMX20_04556at 4768.176 kb on - strand, within MPMX20_04556at 4768.353 kb on + strand, within MPMX20_04556at 4768.430 kb on + strand, within MPMX20_04556at 4768.479 kb on + strandat 4768.487 kb on - strandat 4768.487 kb on - strandat 4768.534 kb on + strandat 4768.542 kb on + strandat 4768.593 kb on + strandat 4768.603 kb on + strandat 4768.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,766,223 + MPMX20_04553 0.11 +0.7
4,766,228 + MPMX20_04553 0.12 -1.6
4,766,249 + MPMX20_04553 0.14 -1.9
4,766,249 + MPMX20_04553 0.14 -0.6
4,766,293 + MPMX20_04553 0.19 -0.9
4,766,298 + MPMX20_04553 0.19 -2.2
4,766,306 - MPMX20_04553 0.20 +1.4
4,766,330 + MPMX20_04553 0.23 -1.0
4,766,330 + MPMX20_04553 0.23 -0.4
4,766,332 + MPMX20_04553 0.23 +0.0
4,766,338 - MPMX20_04553 0.24 +1.0
4,766,342 + MPMX20_04553 0.24 -0.5
4,766,342 + MPMX20_04553 0.24 +0.8
4,766,358 - MPMX20_04553 0.26 +1.7
4,766,389 - MPMX20_04553 0.30 -0.7
4,766,398 + MPMX20_04553 0.31 +0.3
4,766,398 + MPMX20_04553 0.31 -0.4
4,766,398 + MPMX20_04553 0.31 -1.0
4,766,406 - MPMX20_04553 0.31 +1.6
4,766,406 - MPMX20_04553 0.31 -0.2
4,766,406 - MPMX20_04553 0.31 -1.1
4,766,406 - MPMX20_04553 0.31 -1.2
4,766,418 + MPMX20_04553 0.33 -0.6
4,766,431 + MPMX20_04553 0.34 -0.8
4,766,457 + MPMX20_04553 0.37 +1.6
4,766,494 - MPMX20_04553 0.41 -0.1
4,766,501 + MPMX20_04553 0.42 -1.8
4,766,501 + MPMX20_04553 0.42 +0.1
4,766,501 + MPMX20_04553 0.42 +0.4
4,766,501 + MPMX20_04553 0.42 +0.8
4,766,501 + MPMX20_04553 0.42 -0.5
4,766,501 + MPMX20_04553 0.42 -0.6
4,766,509 - MPMX20_04553 0.43 +0.4
4,766,509 - MPMX20_04553 0.43 +0.8
4,766,509 - MPMX20_04553 0.43 +0.4
4,766,580 - MPMX20_04553 0.51 +1.3
4,766,609 - MPMX20_04553 0.54 +1.0
4,766,609 - MPMX20_04553 0.54 +0.5
4,766,609 - MPMX20_04553 0.54 +1.6
4,766,638 + MPMX20_04553 0.57 -0.8
4,766,649 + MPMX20_04553 0.59 +0.1
4,766,734 - MPMX20_04553 0.68 -0.6
4,766,808 + MPMX20_04553 0.76 +0.3
4,766,831 + MPMX20_04553 0.79 -0.2
4,766,836 + MPMX20_04553 0.80 -0.5
4,766,839 - MPMX20_04553 0.80 +1.4
4,766,844 - MPMX20_04553 0.80 -2.8
4,766,849 - MPMX20_04553 0.81 +0.7
4,766,851 - MPMX20_04553 0.81 +1.1
4,766,918 + MPMX20_04553 0.89 +1.1
4,766,918 + MPMX20_04553 0.89 +0.0
4,766,926 - MPMX20_04553 0.90 +0.5
4,766,926 - MPMX20_04553 0.90 -0.9
4,766,989 + +0.4
4,767,022 + -0.4
4,767,199 - +0.2
4,767,280 + MPMX20_04555 0.21 +0.1
4,767,297 + MPMX20_04555 0.25 +1.8
4,767,367 - MPMX20_04555 0.38 -0.2
4,767,387 + MPMX20_04555 0.42 +1.6
4,767,396 - MPMX20_04555 0.44 -0.1
4,767,456 + MPMX20_04555 0.56 +0.6
4,767,464 - MPMX20_04555 0.58 -0.4
4,767,464 - MPMX20_04555 0.58 -1.6
4,767,543 + MPMX20_04555 0.73 -0.5
4,767,570 - MPMX20_04555 0.79 -1.3
4,767,629 - -2.0
4,767,629 - -1.9
4,767,629 - +0.8
4,767,663 + +1.1
4,767,673 + +0.9
4,767,757 + -1.2
4,767,797 - -1.3
4,768,026 + MPMX20_04556 0.28 +4.7
4,768,044 - MPMX20_04556 0.31 -1.8
4,768,068 + MPMX20_04556 0.34 -1.1
4,768,076 + MPMX20_04556 0.35 +0.6
4,768,084 - MPMX20_04556 0.36 -1.2
4,768,094 + MPMX20_04556 0.38 -0.0
4,768,094 + MPMX20_04556 0.38 +0.3
4,768,094 + MPMX20_04556 0.38 -0.7
4,768,094 + MPMX20_04556 0.38 +0.1
4,768,102 - MPMX20_04556 0.39 -0.6
4,768,102 - MPMX20_04556 0.39 +0.7
4,768,102 - MPMX20_04556 0.39 +0.2
4,768,102 - MPMX20_04556 0.39 +1.2
4,768,102 - MPMX20_04556 0.39 -0.8
4,768,102 - MPMX20_04556 0.39 -0.3
4,768,158 + MPMX20_04556 0.47 -0.5
4,768,168 + MPMX20_04556 0.48 -1.3
4,768,176 - MPMX20_04556 0.50 -0.5
4,768,353 + MPMX20_04556 0.75 -0.7
4,768,430 + MPMX20_04556 0.86 -1.3
4,768,479 + -0.2
4,768,487 - +0.7
4,768,487 - +0.8
4,768,534 + -1.1
4,768,542 + -2.3
4,768,593 + +0.1
4,768,603 + -0.8
4,768,635 + +0.4

Or see this region's nucleotide sequence