Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04553 and MPMX20_04554 are separated by 55 nucleotides MPMX20_04554 and MPMX20_04555 overlap by 100 nucleotides MPMX20_04555 and MPMX20_04556 are separated by 150 nucleotides MPMX20_04556 and MPMX20_04557 overlap by 4 nucleotides
MPMX20_04553: MPMX20_04553 - Ferrous-iron efflux pump FieF, at 4,766,125 to 4,767,018
_04553
MPMX20_04554: MPMX20_04554 - hypothetical protein, at 4,767,074 to 4,767,271
_04554
MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678
_04555
MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527
_04556
MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897
_04557
Position (kb)
4767
4768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4766.223 kb on + strand, within MPMX20_04553 at 4766.228 kb on + strand, within MPMX20_04553 at 4766.249 kb on + strand, within MPMX20_04553 at 4766.249 kb on + strand, within MPMX20_04553 at 4766.293 kb on + strand, within MPMX20_04553 at 4766.298 kb on + strand, within MPMX20_04553 at 4766.306 kb on - strand, within MPMX20_04553 at 4766.330 kb on + strand, within MPMX20_04553 at 4766.330 kb on + strand, within MPMX20_04553 at 4766.332 kb on + strand, within MPMX20_04553 at 4766.338 kb on - strand, within MPMX20_04553 at 4766.342 kb on + strand, within MPMX20_04553 at 4766.342 kb on + strand, within MPMX20_04553 at 4766.358 kb on - strand, within MPMX20_04553 at 4766.389 kb on - strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.418 kb on + strand, within MPMX20_04553 at 4766.431 kb on + strand, within MPMX20_04553 at 4766.457 kb on + strand, within MPMX20_04553 at 4766.494 kb on - strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.580 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.638 kb on + strand, within MPMX20_04553 at 4766.649 kb on + strand, within MPMX20_04553 at 4766.734 kb on - strand, within MPMX20_04553 at 4766.808 kb on + strand, within MPMX20_04553 at 4766.831 kb on + strand, within MPMX20_04553 at 4766.836 kb on + strand, within MPMX20_04553 at 4766.839 kb on - strand, within MPMX20_04553 at 4766.844 kb on - strand, within MPMX20_04553 at 4766.849 kb on - strand, within MPMX20_04553 at 4766.851 kb on - strand, within MPMX20_04553 at 4766.918 kb on + strand, within MPMX20_04553 at 4766.918 kb on + strand, within MPMX20_04553 at 4766.926 kb on - strand, within MPMX20_04553 at 4766.926 kb on - strand, within MPMX20_04553 at 4766.989 kb on + strand at 4767.022 kb on + strand at 4767.199 kb on - strand at 4767.280 kb on + strand, within MPMX20_04555 at 4767.297 kb on + strand, within MPMX20_04555 at 4767.367 kb on - strand, within MPMX20_04555 at 4767.387 kb on + strand, within MPMX20_04555 at 4767.396 kb on - strand, within MPMX20_04555 at 4767.456 kb on + strand, within MPMX20_04555 at 4767.464 kb on - strand, within MPMX20_04555 at 4767.464 kb on - strand, within MPMX20_04555 at 4767.543 kb on + strand, within MPMX20_04555 at 4767.570 kb on - strand, within MPMX20_04555 at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.663 kb on + strand at 4767.673 kb on + strand at 4767.757 kb on + strand at 4767.797 kb on - strand at 4768.026 kb on + strand, within MPMX20_04556 at 4768.044 kb on - strand, within MPMX20_04556 at 4768.068 kb on + strand, within MPMX20_04556 at 4768.076 kb on + strand, within MPMX20_04556 at 4768.084 kb on - strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.158 kb on + strand, within MPMX20_04556 at 4768.168 kb on + strand, within MPMX20_04556 at 4768.176 kb on - strand, within MPMX20_04556 at 4768.353 kb on + strand, within MPMX20_04556 at 4768.430 kb on + strand, within MPMX20_04556 at 4768.479 kb on + strand at 4768.487 kb on - strand at 4768.487 kb on - strand at 4768.534 kb on + strand at 4768.542 kb on + strand at 4768.593 kb on + strand at 4768.603 kb on + strand at 4768.635 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,766,223 + MPMX20_04553 0.11 +0.7 4,766,228 + MPMX20_04553 0.12 -1.6 4,766,249 + MPMX20_04553 0.14 -1.9 4,766,249 + MPMX20_04553 0.14 -0.6 4,766,293 + MPMX20_04553 0.19 -0.9 4,766,298 + MPMX20_04553 0.19 -2.2 4,766,306 - MPMX20_04553 0.20 +1.4 4,766,330 + MPMX20_04553 0.23 -1.0 4,766,330 + MPMX20_04553 0.23 -0.4 4,766,332 + MPMX20_04553 0.23 +0.0 4,766,338 - MPMX20_04553 0.24 +1.0 4,766,342 + MPMX20_04553 0.24 -0.5 4,766,342 + MPMX20_04553 0.24 +0.8 4,766,358 - MPMX20_04553 0.26 +1.7 4,766,389 - MPMX20_04553 0.30 -0.7 4,766,398 + MPMX20_04553 0.31 +0.3 4,766,398 + MPMX20_04553 0.31 -0.4 4,766,398 + MPMX20_04553 0.31 -1.0 4,766,406 - MPMX20_04553 0.31 +1.6 4,766,406 - MPMX20_04553 0.31 -0.2 4,766,406 - MPMX20_04553 0.31 -1.1 4,766,406 - MPMX20_04553 0.31 -1.2 4,766,418 + MPMX20_04553 0.33 -0.6 4,766,431 + MPMX20_04553 0.34 -0.8 4,766,457 + MPMX20_04553 0.37 +1.6 4,766,494 - MPMX20_04553 0.41 -0.1 4,766,501 + MPMX20_04553 0.42 -1.8 4,766,501 + MPMX20_04553 0.42 +0.1 4,766,501 + MPMX20_04553 0.42 +0.4 4,766,501 + MPMX20_04553 0.42 +0.8 4,766,501 + MPMX20_04553 0.42 -0.5 4,766,501 + MPMX20_04553 0.42 -0.6 4,766,509 - MPMX20_04553 0.43 +0.4 4,766,509 - MPMX20_04553 0.43 +0.8 4,766,509 - MPMX20_04553 0.43 +0.4 4,766,580 - MPMX20_04553 0.51 +1.3 4,766,609 - MPMX20_04553 0.54 +1.0 4,766,609 - MPMX20_04553 0.54 +0.5 4,766,609 - MPMX20_04553 0.54 +1.6 4,766,638 + MPMX20_04553 0.57 -0.8 4,766,649 + MPMX20_04553 0.59 +0.1 4,766,734 - MPMX20_04553 0.68 -0.6 4,766,808 + MPMX20_04553 0.76 +0.3 4,766,831 + MPMX20_04553 0.79 -0.2 4,766,836 + MPMX20_04553 0.80 -0.5 4,766,839 - MPMX20_04553 0.80 +1.4 4,766,844 - MPMX20_04553 0.80 -2.8 4,766,849 - MPMX20_04553 0.81 +0.7 4,766,851 - MPMX20_04553 0.81 +1.1 4,766,918 + MPMX20_04553 0.89 +1.1 4,766,918 + MPMX20_04553 0.89 +0.0 4,766,926 - MPMX20_04553 0.90 +0.5 4,766,926 - MPMX20_04553 0.90 -0.9 4,766,989 + +0.4 4,767,022 + -0.4 4,767,199 - +0.2 4,767,280 + MPMX20_04555 0.21 +0.1 4,767,297 + MPMX20_04555 0.25 +1.8 4,767,367 - MPMX20_04555 0.38 -0.2 4,767,387 + MPMX20_04555 0.42 +1.6 4,767,396 - MPMX20_04555 0.44 -0.1 4,767,456 + MPMX20_04555 0.56 +0.6 4,767,464 - MPMX20_04555 0.58 -0.4 4,767,464 - MPMX20_04555 0.58 -1.6 4,767,543 + MPMX20_04555 0.73 -0.5 4,767,570 - MPMX20_04555 0.79 -1.3 4,767,629 - -2.0 4,767,629 - -1.9 4,767,629 - +0.8 4,767,663 + +1.1 4,767,673 + +0.9 4,767,757 + -1.2 4,767,797 - -1.3 4,768,026 + MPMX20_04556 0.28 +4.7 4,768,044 - MPMX20_04556 0.31 -1.8 4,768,068 + MPMX20_04556 0.34 -1.1 4,768,076 + MPMX20_04556 0.35 +0.6 4,768,084 - MPMX20_04556 0.36 -1.2 4,768,094 + MPMX20_04556 0.38 -0.0 4,768,094 + MPMX20_04556 0.38 +0.3 4,768,094 + MPMX20_04556 0.38 -0.7 4,768,094 + MPMX20_04556 0.38 +0.1 4,768,102 - MPMX20_04556 0.39 -0.6 4,768,102 - MPMX20_04556 0.39 +0.7 4,768,102 - MPMX20_04556 0.39 +0.2 4,768,102 - MPMX20_04556 0.39 +1.2 4,768,102 - MPMX20_04556 0.39 -0.8 4,768,102 - MPMX20_04556 0.39 -0.3 4,768,158 + MPMX20_04556 0.47 -0.5 4,768,168 + MPMX20_04556 0.48 -1.3 4,768,176 - MPMX20_04556 0.50 -0.5 4,768,353 + MPMX20_04556 0.75 -0.7 4,768,430 + MPMX20_04556 0.86 -1.3 4,768,479 + -0.2 4,768,487 - +0.7 4,768,487 - +0.8 4,768,534 + -1.1 4,768,542 + -2.3 4,768,593 + +0.1 4,768,603 + -0.8 4,768,635 + +0.4
Or see this region's nucleotide sequence