Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02894

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02891 and MPMX20_02892 overlap by 1 nucleotidesMPMX20_02892 and MPMX20_02893 are separated by 3 nucleotidesMPMX20_02893 and MPMX20_02894 are separated by 146 nucleotidesMPMX20_02894 and MPMX20_02895 are separated by 234 nucleotidesMPMX20_02895 and MPMX20_02896 overlap by 4 nucleotides MPMX20_02891: MPMX20_02891 - hypothetical protein, at 3,040,889 to 3,042,361 _02891 MPMX20_02892: MPMX20_02892 - hypothetical protein, at 3,042,361 to 3,042,876 _02892 MPMX20_02893: MPMX20_02893 - hypothetical protein, at 3,042,880 to 3,043,083 _02893 MPMX20_02894: MPMX20_02894 - hypothetical protein, at 3,043,230 to 3,043,439 _02894 MPMX20_02895: MPMX20_02895 - hypothetical protein, at 3,043,674 to 3,044,060 _02895 MPMX20_02896: MPMX20_02896 - Lysozyme RrrD, at 3,044,057 to 3,044,497 _02896 Position (kb) 3043 3044Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.250 kb on + strandat 3042.258 kb on - strandat 3042.263 kb on + strandat 3042.284 kb on - strandat 3042.284 kb on - strandat 3042.284 kb on - strandat 3042.368 kb on + strandat 3042.384 kb on - strandat 3042.390 kb on + strandat 3042.390 kb on + strandat 3042.398 kb on - strandat 3042.399 kb on + strandat 3042.423 kb on + strand, within MPMX20_02892at 3042.436 kb on + strand, within MPMX20_02892at 3042.436 kb on + strand, within MPMX20_02892at 3042.436 kb on - strand, within MPMX20_02892at 3042.451 kb on - strand, within MPMX20_02892at 3042.485 kb on - strand, within MPMX20_02892at 3042.566 kb on - strand, within MPMX20_02892at 3042.610 kb on - strand, within MPMX20_02892at 3042.628 kb on - strand, within MPMX20_02892at 3042.658 kb on + strand, within MPMX20_02892at 3042.662 kb on + strand, within MPMX20_02892at 3042.727 kb on - strand, within MPMX20_02892at 3042.727 kb on - strand, within MPMX20_02892at 3042.732 kb on - strand, within MPMX20_02892at 3042.732 kb on - strand, within MPMX20_02892at 3042.755 kb on - strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.769 kb on + strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.777 kb on - strand, within MPMX20_02892at 3042.786 kb on + strand, within MPMX20_02892at 3042.787 kb on + strand, within MPMX20_02892at 3042.794 kb on - strand, within MPMX20_02892at 3042.795 kb on - strand, within MPMX20_02892at 3042.935 kb on + strand, within MPMX20_02893at 3042.938 kb on - strand, within MPMX20_02893at 3042.938 kb on - strand, within MPMX20_02893at 3042.953 kb on - strand, within MPMX20_02893at 3042.953 kb on - strand, within MPMX20_02893at 3043.011 kb on + strand, within MPMX20_02893at 3043.018 kb on + strand, within MPMX20_02893at 3043.126 kb on - strandat 3043.126 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.145 kb on - strandat 3043.151 kb on + strandat 3043.159 kb on + strandat 3043.180 kb on + strandat 3043.180 kb on + strandat 3043.188 kb on - strandat 3043.190 kb on - strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.229 kb on - strandat 3043.348 kb on - strand, within MPMX20_02894at 3043.364 kb on + strand, within MPMX20_02894at 3043.382 kb on + strand, within MPMX20_02894at 3043.394 kb on + strand, within MPMX20_02894at 3043.412 kb on - strand, within MPMX20_02894at 3043.432 kb on - strandat 3043.441 kb on + strandat 3043.461 kb on + strandat 3043.461 kb on + strandat 3043.469 kb on - strandat 3043.504 kb on - strandat 3043.509 kb on - strandat 3043.531 kb on + strandat 3043.569 kb on + strandat 3043.579 kb on + strandat 3043.579 kb on + strandat 3043.587 kb on + strandat 3043.587 kb on - strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.595 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.672 kb on + strandat 3043.672 kb on + strandat 3043.673 kb on - strandat 3043.724 kb on + strand, within MPMX20_02895at 3043.794 kb on + strand, within MPMX20_02895at 3043.836 kb on - strand, within MPMX20_02895at 3043.907 kb on + strand, within MPMX20_02895at 3043.907 kb on + strand, within MPMX20_02895at 3043.915 kb on - strand, within MPMX20_02895at 3043.921 kb on + strand, within MPMX20_02895at 3043.921 kb on + strand, within MPMX20_02895at 3043.929 kb on - strand, within MPMX20_02895at 3043.929 kb on - strand, within MPMX20_02895at 3043.934 kb on - strand, within MPMX20_02895at 3043.949 kb on - strand, within MPMX20_02895at 3043.972 kb on + strand, within MPMX20_02895at 3044.046 kb on - strandat 3044.063 kb on - strandat 3044.071 kb on - strandat 3044.113 kb on - strand, within MPMX20_02896at 3044.118 kb on - strand, within MPMX20_02896at 3044.133 kb on - strand, within MPMX20_02896at 3044.256 kb on + strand, within MPMX20_02896at 3044.262 kb on - strand, within MPMX20_02896at 3044.266 kb on + strand, within MPMX20_02896at 3044.296 kb on + strand, within MPMX20_02896at 3044.311 kb on - strand, within MPMX20_02896at 3044.329 kb on + strand, within MPMX20_02896at 3044.349 kb on + strand, within MPMX20_02896at 3044.364 kb on - strand, within MPMX20_02896at 3044.372 kb on - strand, within MPMX20_02896at 3044.396 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
3,042,250 + -0.6
3,042,250 + +2.2
3,042,250 + +1.5
3,042,250 + +2.2
3,042,250 + +0.5
3,042,250 + +0.6
3,042,258 - +1.9
3,042,263 + +1.7
3,042,284 - -1.9
3,042,284 - -0.5
3,042,284 - +0.7
3,042,368 + +2.1
3,042,384 - -0.2
3,042,390 + +0.3
3,042,390 + -0.1
3,042,398 - +1.3
3,042,399 + +3.4
3,042,423 + MPMX20_02892 0.12 +0.6
3,042,436 + MPMX20_02892 0.15 +1.2
3,042,436 + MPMX20_02892 0.15 +1.4
3,042,436 - MPMX20_02892 0.15 -1.2
3,042,451 - MPMX20_02892 0.17 -0.4
3,042,485 - MPMX20_02892 0.24 -0.5
3,042,566 - MPMX20_02892 0.40 -0.7
3,042,610 - MPMX20_02892 0.48 -0.3
3,042,628 - MPMX20_02892 0.52 -0.2
3,042,658 + MPMX20_02892 0.58 +2.2
3,042,662 + MPMX20_02892 0.58 +0.4
3,042,727 - MPMX20_02892 0.71 +2.3
3,042,727 - MPMX20_02892 0.71 +0.8
3,042,732 - MPMX20_02892 0.72 +1.0
3,042,732 - MPMX20_02892 0.72 +1.0
3,042,755 - MPMX20_02892 0.76 +1.4
3,042,769 + MPMX20_02892 0.79 +1.4
3,042,769 + MPMX20_02892 0.79 +3.6
3,042,769 + MPMX20_02892 0.79 +3.0
3,042,777 - MPMX20_02892 0.81 +0.9
3,042,777 - MPMX20_02892 0.81 +1.2
3,042,777 - MPMX20_02892 0.81 +0.1
3,042,777 - MPMX20_02892 0.81 -0.3
3,042,786 + MPMX20_02892 0.82 +1.2
3,042,787 + MPMX20_02892 0.83 -1.0
3,042,794 - MPMX20_02892 0.84 +0.9
3,042,795 - MPMX20_02892 0.84 -1.8
3,042,935 + MPMX20_02893 0.27 +1.6
3,042,938 - MPMX20_02893 0.28 +1.3
3,042,938 - MPMX20_02893 0.28 +3.0
3,042,953 - MPMX20_02893 0.36 -1.2
3,042,953 - MPMX20_02893 0.36 +1.6
3,043,011 + MPMX20_02893 0.64 +1.1
3,043,018 + MPMX20_02893 0.68 +1.6
3,043,126 - +1.4
3,043,126 - -0.9
3,043,134 - +2.2
3,043,134 - +2.5
3,043,134 - +1.1
3,043,145 - +3.1
3,043,151 + +2.4
3,043,159 + +2.6
3,043,180 + +1.8
3,043,180 + -0.8
3,043,188 - +0.8
3,043,190 - +0.7
3,043,206 + +2.1
3,043,206 + +0.3
3,043,206 + +2.5
3,043,229 - +2.0
3,043,348 - MPMX20_02894 0.56 -1.0
3,043,364 + MPMX20_02894 0.64 +2.6
3,043,382 + MPMX20_02894 0.72 +2.7
3,043,394 + MPMX20_02894 0.78 +2.6
3,043,412 - MPMX20_02894 0.87 +0.4
3,043,432 - +1.7
3,043,441 + +1.7
3,043,461 + +1.5
3,043,461 + +1.6
3,043,469 - +1.9
3,043,504 - +0.2
3,043,509 - +0.9
3,043,531 + +2.8
3,043,569 + +1.7
3,043,579 + +0.6
3,043,579 + +2.6
3,043,587 + +2.2
3,043,587 - +0.8
3,043,590 + +0.7
3,043,590 + -0.1
3,043,590 + +2.0
3,043,590 + -1.1
3,043,590 + +1.3
3,043,590 + +1.9
3,043,590 + +2.7
3,043,590 + +2.2
3,043,590 + +1.7
3,043,590 + +2.0
3,043,590 + -0.3
3,043,595 - -1.2
3,043,598 - +1.8
3,043,598 - +1.6
3,043,598 - +0.5
3,043,598 - +0.7
3,043,598 - +2.4
3,043,598 - +1.9
3,043,598 - -1.0
3,043,598 - +1.5
3,043,598 - -0.4
3,043,598 - +0.4
3,043,598 - +1.9
3,043,598 - +1.1
3,043,672 + +1.8
3,043,672 + -1.9
3,043,673 - +2.2
3,043,724 + MPMX20_02895 0.13 +2.5
3,043,794 + MPMX20_02895 0.31 +0.7
3,043,836 - MPMX20_02895 0.42 -1.2
3,043,907 + MPMX20_02895 0.60 +2.3
3,043,907 + MPMX20_02895 0.60 +2.8
3,043,915 - MPMX20_02895 0.62 +0.0
3,043,921 + MPMX20_02895 0.64 +1.7
3,043,921 + MPMX20_02895 0.64 +1.9
3,043,929 - MPMX20_02895 0.66 -1.9
3,043,929 - MPMX20_02895 0.66 +1.5
3,043,934 - MPMX20_02895 0.67 +0.5
3,043,949 - MPMX20_02895 0.71 +3.3
3,043,972 + MPMX20_02895 0.77 +2.0
3,044,046 - -1.3
3,044,063 - +0.8
3,044,071 - +1.6
3,044,113 - MPMX20_02896 0.13 +0.6
3,044,118 - MPMX20_02896 0.14 -1.3
3,044,133 - MPMX20_02896 0.17 +2.2
3,044,256 + MPMX20_02896 0.45 +0.8
3,044,262 - MPMX20_02896 0.46 +2.7
3,044,266 + MPMX20_02896 0.47 +2.5
3,044,296 + MPMX20_02896 0.54 +1.6
3,044,311 - MPMX20_02896 0.58 +2.3
3,044,329 + MPMX20_02896 0.62 -0.3
3,044,349 + MPMX20_02896 0.66 -0.4
3,044,364 - MPMX20_02896 0.70 +2.0
3,044,372 - MPMX20_02896 0.71 +2.2
3,044,396 + MPMX20_02896 0.77 +0.0
3,044,416 + MPMX20_02896 0.81 +4.0
3,044,416 + MPMX20_02896 0.81 +1.7
3,044,416 + MPMX20_02896 0.81 +3.2
3,044,416 + MPMX20_02896 0.81 +1.8
3,044,416 + MPMX20_02896 0.81 +1.4
3,044,416 + MPMX20_02896 0.81 +1.6
3,044,424 - MPMX20_02896 0.83 +3.0
3,044,424 - MPMX20_02896 0.83 +1.7
3,044,424 - MPMX20_02896 0.83 +3.0
3,044,424 - MPMX20_02896 0.83 +2.4
3,044,424 - MPMX20_02896 0.83 +1.0
3,044,424 - MPMX20_02896 0.83 +3.1
3,044,424 - MPMX20_02896 0.83 +2.5
3,044,426 + MPMX20_02896 0.84 +1.6
3,044,426 + MPMX20_02896 0.84 +1.9
3,044,426 + MPMX20_02896 0.84 +1.9
3,044,426 + MPMX20_02896 0.84 +0.8
3,044,426 - MPMX20_02896 0.84 +2.9
3,044,434 - MPMX20_02896 0.85 +0.1
3,044,434 - MPMX20_02896 0.85 -0.5
3,044,434 - MPMX20_02896 0.85 +0.8
3,044,434 - MPMX20_02896 0.85 +2.3

Or see this region's nucleotide sequence