Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04559

Experiment: L-Methionine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04557 and MPMX20_04558 are separated by 54 nucleotidesMPMX20_04558 and MPMX20_04559 are separated by 70 nucleotidesMPMX20_04559 and MPMX20_04560 are separated by 289 nucleotides MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897 _04557 MPMX20_04558: MPMX20_04558 - Protein YiiM, at 4,769,952 to 4,770,626 _04558 MPMX20_04559: MPMX20_04559 - Superoxide dismutase [Mn], at 4,770,697 to 4,771,317 _04559 MPMX20_04560: MPMX20_04560 - L-rhamnose-proton symporter, at 4,771,607 to 4,772,641 _04560 Position (kb) 4770 4771 4772Strain fitness (log2 ratio) -3 -2 -1 0 1at 4769.698 kb on + strand, within MPMX20_04557at 4769.698 kb on + strand, within MPMX20_04557at 4769.723 kb on - strand, within MPMX20_04557at 4769.745 kb on - strand, within MPMX20_04557at 4769.770 kb on + strandat 4769.783 kb on - strandat 4769.861 kb on - strandat 4769.868 kb on - strandat 4769.940 kb on + strandat 4770.116 kb on - strand, within MPMX20_04558at 4770.127 kb on - strand, within MPMX20_04558at 4770.147 kb on - strand, within MPMX20_04558at 4770.511 kb on + strand, within MPMX20_04558at 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.587 kb on + strandat 4770.594 kb on - strandat 4770.594 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.595 kb on - strandat 4770.634 kb on - strandat 4770.736 kb on + strandat 4770.744 kb on - strandat 4770.820 kb on + strand, within MPMX20_04559at 4770.928 kb on + strand, within MPMX20_04559at 4771.035 kb on + strand, within MPMX20_04559at 4771.058 kb on + strand, within MPMX20_04559at 4771.096 kb on - strand, within MPMX20_04559at 4771.104 kb on - strand, within MPMX20_04559at 4771.134 kb on - strand, within MPMX20_04559at 4771.207 kb on + strand, within MPMX20_04559at 4771.216 kb on + strand, within MPMX20_04559at 4771.226 kb on + strand, within MPMX20_04559at 4771.297 kb on + strandat 4771.305 kb on + strandat 4771.313 kb on + strandat 4771.313 kb on - strandat 4771.313 kb on - strandat 4771.321 kb on - strandat 4771.348 kb on - strandat 4771.349 kb on + strandat 4771.350 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.529 kb on - strandat 4771.565 kb on + strandat 4771.640 kb on + strandat 4771.645 kb on + strandat 4771.690 kb on + strandat 4771.690 kb on + strandat 4771.691 kb on + strandat 4771.699 kb on - strandat 4771.709 kb on - strandat 4771.823 kb on - strand, within MPMX20_04560at 4771.823 kb on - strand, within MPMX20_04560at 4771.823 kb on - strand, within MPMX20_04560at 4771.840 kb on + strand, within MPMX20_04560at 4771.853 kb on - strand, within MPMX20_04560at 4771.929 kb on + strand, within MPMX20_04560at 4771.929 kb on + strand, within MPMX20_04560at 4771.937 kb on - strand, within MPMX20_04560at 4771.972 kb on + strand, within MPMX20_04560at 4771.974 kb on - strand, within MPMX20_04560at 4771.985 kb on + strand, within MPMX20_04560at 4771.996 kb on + strand, within MPMX20_04560at 4772.004 kb on - strand, within MPMX20_04560at 4772.015 kb on + strand, within MPMX20_04560at 4772.020 kb on + strand, within MPMX20_04560at 4772.020 kb on + strand, within MPMX20_04560at 4772.072 kb on - strand, within MPMX20_04560at 4772.165 kb on + strand, within MPMX20_04560at 4772.236 kb on + strand, within MPMX20_04560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
remove
4,769,698 + MPMX20_04557 0.85 -1.5
4,769,698 + MPMX20_04557 0.85 -2.1
4,769,723 - MPMX20_04557 0.87 -1.3
4,769,745 - MPMX20_04557 0.89 -1.8
4,769,770 + -2.8
4,769,783 - -0.5
4,769,861 - -0.3
4,769,868 - -0.4
4,769,940 + -1.0
4,770,116 - MPMX20_04558 0.24 -0.4
4,770,127 - MPMX20_04558 0.26 -0.5
4,770,147 - MPMX20_04558 0.29 -1.3
4,770,511 + MPMX20_04558 0.83 -1.5
4,770,587 + +0.6
4,770,587 + -1.6
4,770,587 + -3.1
4,770,587 + -0.3
4,770,594 - +0.4
4,770,594 - -1.7
4,770,595 - -0.4
4,770,595 - -0.1
4,770,595 - +0.4
4,770,595 - +0.4
4,770,595 - -0.0
4,770,634 - -0.6
4,770,736 + -1.6
4,770,744 - -2.4
4,770,820 + MPMX20_04559 0.20 +0.1
4,770,928 + MPMX20_04559 0.37 -1.9
4,771,035 + MPMX20_04559 0.54 +1.2
4,771,058 + MPMX20_04559 0.58 -0.7
4,771,096 - MPMX20_04559 0.64 -1.0
4,771,104 - MPMX20_04559 0.66 -1.4
4,771,134 - MPMX20_04559 0.70 -1.8
4,771,207 + MPMX20_04559 0.82 -3.4
4,771,216 + MPMX20_04559 0.84 -1.2
4,771,226 + MPMX20_04559 0.85 -1.7
4,771,297 + -1.3
4,771,305 + -1.3
4,771,313 + -1.3
4,771,313 - -1.4
4,771,313 - -0.6
4,771,321 - -0.1
4,771,348 - -1.3
4,771,349 + -2.0
4,771,350 - -0.3
4,771,529 - +0.8
4,771,529 - +0.4
4,771,529 - +1.7
4,771,529 - +0.7
4,771,565 + -0.0
4,771,640 + -0.4
4,771,645 + +0.7
4,771,690 + -0.7
4,771,690 + +0.3
4,771,691 + -0.6
4,771,699 - +0.4
4,771,709 - +0.7
4,771,823 - MPMX20_04560 0.21 +1.2
4,771,823 - MPMX20_04560 0.21 +0.1
4,771,823 - MPMX20_04560 0.21 -0.0
4,771,840 + MPMX20_04560 0.23 +0.6
4,771,853 - MPMX20_04560 0.24 +1.1
4,771,929 + MPMX20_04560 0.31 -0.2
4,771,929 + MPMX20_04560 0.31 +0.4
4,771,937 - MPMX20_04560 0.32 -2.1
4,771,972 + MPMX20_04560 0.35 -0.0
4,771,974 - MPMX20_04560 0.35 +0.2
4,771,985 + MPMX20_04560 0.37 +0.5
4,771,996 + MPMX20_04560 0.38 -0.2
4,772,004 - MPMX20_04560 0.38 -1.2
4,772,015 + MPMX20_04560 0.39 -0.9
4,772,020 + MPMX20_04560 0.40 -1.3
4,772,020 + MPMX20_04560 0.40 -1.5
4,772,072 - MPMX20_04560 0.45 -0.2
4,772,165 + MPMX20_04560 0.54 -2.0
4,772,236 + MPMX20_04560 0.61 -0.6

Or see this region's nucleotide sequence