Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04031 and MPMX20_04032 are separated by 634 nucleotides MPMX20_04032 and MPMX20_04033 are separated by 60 nucleotides MPMX20_04033 and MPMX20_04034 are separated by 21 nucleotides
MPMX20_04031: MPMX20_04031 - Tyrosine recombinase XerC, at 4,228,880 to 4,230,343
_04031
MPMX20_04032: MPMX20_04032 - Glycerate 2-kinase, at 4,230,978 to 4,232,123
_04032
MPMX20_04033: MPMX20_04033 - 2-hydroxy-3-oxopropionate reductase, at 4,232,184 to 4,233,074
_04033
MPMX20_04034: MPMX20_04034 - 5-keto-4-deoxy-D-glucarate aldolase, at 4,233,096 to 4,233,866
_04034
Position (kb)
4230
4231
4232
4233 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4229.990 kb on + strand, within MPMX20_04031 at 4229.996 kb on + strand, within MPMX20_04031 at 4230.014 kb on - strand, within MPMX20_04031 at 4230.027 kb on - strand, within MPMX20_04031 at 4230.030 kb on + strand, within MPMX20_04031 at 4230.030 kb on + strand, within MPMX20_04031 at 4230.030 kb on + strand, within MPMX20_04031 at 4230.030 kb on + strand, within MPMX20_04031 at 4230.036 kb on + strand, within MPMX20_04031 at 4230.036 kb on + strand, within MPMX20_04031 at 4230.038 kb on + strand, within MPMX20_04031 at 4230.038 kb on + strand, within MPMX20_04031 at 4230.038 kb on - strand, within MPMX20_04031 at 4230.044 kb on - strand, within MPMX20_04031 at 4230.044 kb on - strand, within MPMX20_04031 at 4230.046 kb on - strand, within MPMX20_04031 at 4230.046 kb on - strand, within MPMX20_04031 at 4230.046 kb on - strand, within MPMX20_04031 at 4230.082 kb on + strand, within MPMX20_04031 at 4230.082 kb on + strand, within MPMX20_04031 at 4230.083 kb on + strand, within MPMX20_04031 at 4230.090 kb on - strand, within MPMX20_04031 at 4230.090 kb on - strand, within MPMX20_04031 at 4230.090 kb on - strand, within MPMX20_04031 at 4230.095 kb on - strand, within MPMX20_04031 at 4230.095 kb on - strand, within MPMX20_04031 at 4230.095 kb on - strand, within MPMX20_04031 at 4230.116 kb on + strand, within MPMX20_04031 at 4230.118 kb on + strand, within MPMX20_04031 at 4230.121 kb on + strand, within MPMX20_04031 at 4230.121 kb on + strand, within MPMX20_04031 at 4230.128 kb on - strand, within MPMX20_04031 at 4230.129 kb on - strand, within MPMX20_04031 at 4230.129 kb on - strand, within MPMX20_04031 at 4230.130 kb on + strand, within MPMX20_04031 at 4230.130 kb on + strand, within MPMX20_04031 at 4230.130 kb on - strand, within MPMX20_04031 at 4230.160 kb on + strand, within MPMX20_04031 at 4230.165 kb on + strand, within MPMX20_04031 at 4230.165 kb on + strand, within MPMX20_04031 at 4230.168 kb on - strand, within MPMX20_04031 at 4230.170 kb on + strand, within MPMX20_04031 at 4230.170 kb on + strand, within MPMX20_04031 at 4230.170 kb on + strand, within MPMX20_04031 at 4230.173 kb on - strand, within MPMX20_04031 at 4230.173 kb on - strand, within MPMX20_04031 at 4230.183 kb on - strand, within MPMX20_04031 at 4230.187 kb on + strand, within MPMX20_04031 at 4230.187 kb on - strand, within MPMX20_04031 at 4230.210 kb on + strand at 4230.226 kb on + strand at 4230.288 kb on + strand at 4230.288 kb on + strand at 4230.288 kb on + strand at 4230.290 kb on + strand at 4230.296 kb on - strand at 4230.296 kb on - strand at 4230.296 kb on - strand at 4230.298 kb on - strand at 4230.298 kb on - strand at 4230.298 kb on - strand at 4230.298 kb on - strand at 4230.298 kb on - strand at 4230.302 kb on + strand at 4230.302 kb on + strand at 4230.306 kb on + strand at 4230.306 kb on + strand at 4230.310 kb on - strand at 4230.335 kb on + strand at 4230.343 kb on - strand at 4230.343 kb on - strand at 4230.343 kb on - strand at 4230.357 kb on + strand at 4230.357 kb on + strand at 4230.358 kb on + strand at 4230.358 kb on + strand at 4230.358 kb on + strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.365 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.366 kb on - strand at 4230.372 kb on - strand at 4230.372 kb on - strand at 4230.377 kb on + strand at 4230.377 kb on - strand at 4230.389 kb on + strand at 4230.389 kb on + strand at 4230.389 kb on + strand at 4230.389 kb on + strand at 4230.389 kb on + strand at 4230.389 kb on + strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.397 kb on - strand at 4230.422 kb on - strand at 4230.430 kb on + strand at 4230.430 kb on + strand at 4230.438 kb on + strand at 4230.438 kb on + strand at 4230.446 kb on - strand at 4230.474 kb on + strand at 4230.482 kb on - strand at 4230.528 kb on + strand at 4230.533 kb on + strand at 4230.541 kb on - strand at 4230.567 kb on + strand at 4230.975 kb on + strand at 4230.982 kb on - strand at 4230.983 kb on - strand at 4230.994 kb on + strand at 4231.065 kb on - strand at 4231.065 kb on - strand at 4231.076 kb on + strand at 4231.094 kb on - strand, within MPMX20_04032 at 4231.111 kb on + strand, within MPMX20_04032 at 4231.119 kb on - strand, within MPMX20_04032 at 4231.132 kb on + strand, within MPMX20_04032 at 4231.137 kb on + strand, within MPMX20_04032 at 4231.245 kb on + strand, within MPMX20_04032 at 4231.245 kb on + strand, within MPMX20_04032 at 4231.259 kb on + strand, within MPMX20_04032 at 4231.267 kb on - strand, within MPMX20_04032 at 4231.272 kb on + strand, within MPMX20_04032 at 4231.326 kb on + strand, within MPMX20_04032 at 4231.326 kb on + strand, within MPMX20_04032 at 4231.334 kb on - strand, within MPMX20_04032 at 4231.334 kb on - strand, within MPMX20_04032 at 4231.334 kb on - strand, within MPMX20_04032 at 4231.334 kb on - strand, within MPMX20_04032 at 4231.334 kb on - strand, within MPMX20_04032 at 4231.363 kb on - strand, within MPMX20_04032 at 4231.396 kb on + strand, within MPMX20_04032 at 4231.430 kb on + strand, within MPMX20_04032 at 4231.430 kb on + strand, within MPMX20_04032 at 4231.440 kb on + strand, within MPMX20_04032 at 4231.448 kb on + strand, within MPMX20_04032 at 4231.451 kb on - strand, within MPMX20_04032 at 4231.451 kb on - strand, within MPMX20_04032 at 4231.465 kb on + strand, within MPMX20_04032 at 4231.470 kb on + strand, within MPMX20_04032 at 4231.521 kb on + strand, within MPMX20_04032 at 4231.579 kb on - strand, within MPMX20_04032 at 4231.624 kb on - strand, within MPMX20_04032 at 4231.632 kb on + strand, within MPMX20_04032 at 4231.651 kb on - strand, within MPMX20_04032 at 4231.651 kb on - strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.750 kb on + strand, within MPMX20_04032 at 4231.758 kb on - strand, within MPMX20_04032 at 4231.758 kb on - strand, within MPMX20_04032 at 4231.758 kb on - strand, within MPMX20_04032 at 4231.758 kb on - strand, within MPMX20_04032 at 4231.758 kb on - strand, within MPMX20_04032 at 4231.778 kb on + strand, within MPMX20_04032 at 4231.784 kb on - strand, within MPMX20_04032 at 4231.786 kb on - strand, within MPMX20_04032 at 4231.822 kb on + strand, within MPMX20_04032 at 4231.832 kb on + strand, within MPMX20_04032 at 4231.840 kb on - strand, within MPMX20_04032 at 4231.840 kb on - strand, within MPMX20_04032 at 4231.889 kb on + strand, within MPMX20_04032 at 4231.900 kb on + strand, within MPMX20_04032 at 4231.908 kb on - strand, within MPMX20_04032 at 4231.908 kb on - strand, within MPMX20_04032 at 4231.925 kb on - strand, within MPMX20_04032 at 4231.932 kb on - strand, within MPMX20_04032 at 4231.945 kb on + strand, within MPMX20_04032 at 4231.950 kb on + strand, within MPMX20_04032 at 4231.955 kb on + strand, within MPMX20_04032 at 4231.959 kb on - strand, within MPMX20_04032 at 4232.068 kb on + strand at 4232.125 kb on + strand at 4232.141 kb on + strand at 4232.193 kb on + strand at 4232.194 kb on + strand at 4232.202 kb on - strand at 4232.238 kb on + strand at 4232.238 kb on + strand at 4232.238 kb on + strand at 4232.240 kb on + strand at 4232.245 kb on + strand at 4232.246 kb on - strand at 4232.246 kb on - strand at 4232.250 kb on + strand at 4232.256 kb on - strand at 4232.258 kb on - strand at 4232.258 kb on - strand at 4232.258 kb on - strand at 4232.293 kb on - strand, within MPMX20_04033 at 4232.334 kb on + strand, within MPMX20_04033 at 4232.351 kb on + strand, within MPMX20_04033 at 4232.361 kb on - strand, within MPMX20_04033 at 4232.431 kb on + strand, within MPMX20_04033 at 4232.437 kb on - strand, within MPMX20_04033 at 4232.439 kb on - strand, within MPMX20_04033 at 4232.439 kb on - strand, within MPMX20_04033 at 4232.458 kb on + strand, within MPMX20_04033 at 4232.479 kb on - strand, within MPMX20_04033 at 4232.479 kb on - strand, within MPMX20_04033 at 4232.622 kb on - strand, within MPMX20_04033 at 4232.622 kb on - strand, within MPMX20_04033 at 4232.675 kb on + strand, within MPMX20_04033 at 4232.689 kb on + strand, within MPMX20_04033 at 4232.689 kb on + strand, within MPMX20_04033 at 4232.697 kb on - strand, within MPMX20_04033 at 4232.697 kb on - strand, within MPMX20_04033 at 4232.734 kb on + strand, within MPMX20_04033 at 4232.846 kb on + strand, within MPMX20_04033 at 4232.869 kb on + strand, within MPMX20_04033 at 4232.914 kb on + strand, within MPMX20_04033 at 4232.987 kb on + strand at 4233.004 kb on + strand at 4233.005 kb on - strand at 4233.036 kb on - strand at 4233.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 4,229,990 + MPMX20_04031 0.76 +1.5 4,229,996 + MPMX20_04031 0.76 -0.5 4,230,014 - MPMX20_04031 0.77 -0.8 4,230,027 - MPMX20_04031 0.78 -0.5 4,230,030 + MPMX20_04031 0.79 +1.3 4,230,030 + MPMX20_04031 0.79 -0.8 4,230,030 + MPMX20_04031 0.79 +0.3 4,230,030 + MPMX20_04031 0.79 -0.2 4,230,036 + MPMX20_04031 0.79 +1.5 4,230,036 + MPMX20_04031 0.79 +0.3 4,230,038 + MPMX20_04031 0.79 +0.8 4,230,038 + MPMX20_04031 0.79 +0.0 4,230,038 - MPMX20_04031 0.79 -0.8 4,230,044 - MPMX20_04031 0.80 +0.7 4,230,044 - MPMX20_04031 0.80 -1.8 4,230,046 - MPMX20_04031 0.80 +0.3 4,230,046 - MPMX20_04031 0.80 +1.3 4,230,046 - MPMX20_04031 0.80 -0.4 4,230,082 + MPMX20_04031 0.82 +0.2 4,230,082 + MPMX20_04031 0.82 +1.5 4,230,083 + MPMX20_04031 0.82 -1.7 4,230,090 - MPMX20_04031 0.83 -0.2 4,230,090 - MPMX20_04031 0.83 -0.8 4,230,090 - MPMX20_04031 0.83 +1.4 4,230,095 - MPMX20_04031 0.83 -0.2 4,230,095 - MPMX20_04031 0.83 -0.3 4,230,095 - MPMX20_04031 0.83 +0.5 4,230,116 + MPMX20_04031 0.84 -1.2 4,230,118 + MPMX20_04031 0.85 -2.2 4,230,121 + MPMX20_04031 0.85 -0.2 4,230,121 + MPMX20_04031 0.85 -1.5 4,230,128 - MPMX20_04031 0.85 +0.7 4,230,129 - MPMX20_04031 0.85 -0.5 4,230,129 - MPMX20_04031 0.85 -0.1 4,230,130 + MPMX20_04031 0.85 -1.1 4,230,130 + MPMX20_04031 0.85 -0.7 4,230,130 - MPMX20_04031 0.85 -0.4 4,230,160 + MPMX20_04031 0.87 +0.6 4,230,165 + MPMX20_04031 0.88 +0.0 4,230,165 + MPMX20_04031 0.88 +0.5 4,230,168 - MPMX20_04031 0.88 -0.0 4,230,170 + MPMX20_04031 0.88 -0.7 4,230,170 + MPMX20_04031 0.88 -1.2 4,230,170 + MPMX20_04031 0.88 +1.3 4,230,173 - MPMX20_04031 0.88 -3.9 4,230,173 - MPMX20_04031 0.88 -1.1 4,230,183 - MPMX20_04031 0.89 -2.8 4,230,187 + MPMX20_04031 0.89 -0.9 4,230,187 - MPMX20_04031 0.89 -0.0 4,230,210 + -1.3 4,230,226 + +1.5 4,230,288 + +1.3 4,230,288 + -1.0 4,230,288 + +0.1 4,230,290 + +0.3 4,230,296 - -0.9 4,230,296 - -0.8 4,230,296 - +0.2 4,230,298 - +0.2 4,230,298 - +0.0 4,230,298 - +0.5 4,230,298 - +1.1 4,230,298 - -1.4 4,230,302 + -1.0 4,230,302 + -0.2 4,230,306 + +0.1 4,230,306 + +0.3 4,230,310 - -0.4 4,230,335 + +0.6 4,230,343 - -0.4 4,230,343 - -0.8 4,230,343 - +3.1 4,230,357 + -1.1 4,230,357 + -2.6 4,230,358 + +0.6 4,230,358 + +2.4 4,230,358 + -0.5 4,230,365 - +0.0 4,230,365 - +1.0 4,230,365 - +0.0 4,230,365 - +1.1 4,230,365 - +0.5 4,230,365 - -0.9 4,230,365 - -1.5 4,230,365 - -2.8 4,230,365 - +1.6 4,230,365 - +0.1 4,230,365 - +0.9 4,230,365 - +1.6 4,230,365 - -1.0 4,230,366 - -0.2 4,230,366 - +2.3 4,230,366 - -0.8 4,230,366 - -0.5 4,230,366 - +0.8 4,230,366 - -1.0 4,230,366 - +0.5 4,230,366 - -2.2 4,230,366 - +0.0 4,230,372 - +2.1 4,230,372 - +0.2 4,230,377 + +0.3 4,230,377 - -0.7 4,230,389 + +0.7 4,230,389 + -0.7 4,230,389 + -1.4 4,230,389 + +0.8 4,230,389 + +0.2 4,230,389 + -0.7 4,230,397 - +0.7 4,230,397 - -2.0 4,230,397 - +0.4 4,230,397 - -1.4 4,230,397 - -1.4 4,230,397 - +0.2 4,230,397 - +2.3 4,230,397 - +0.2 4,230,397 - -1.4 4,230,397 - +0.3 4,230,397 - +0.4 4,230,397 - -1.1 4,230,397 - +0.6 4,230,397 - +1.0 4,230,422 - +1.0 4,230,430 + -0.8 4,230,430 + +1.9 4,230,438 + -0.1 4,230,438 + +0.3 4,230,446 - -0.8 4,230,474 + +0.8 4,230,482 - -0.4 4,230,528 + -0.2 4,230,533 + +0.5 4,230,541 - +0.7 4,230,567 + +0.4 4,230,975 + -1.9 4,230,982 - -1.6 4,230,983 - +1.4 4,230,994 + -0.5 4,231,065 - +0.8 4,231,065 - -0.7 4,231,076 + -0.2 4,231,094 - MPMX20_04032 0.10 -2.2 4,231,111 + MPMX20_04032 0.12 -1.4 4,231,119 - MPMX20_04032 0.12 -0.4 4,231,132 + MPMX20_04032 0.13 -1.5 4,231,137 + MPMX20_04032 0.14 -1.2 4,231,245 + MPMX20_04032 0.23 -0.4 4,231,245 + MPMX20_04032 0.23 -2.0 4,231,259 + MPMX20_04032 0.25 -0.7 4,231,267 - MPMX20_04032 0.25 -1.0 4,231,272 + MPMX20_04032 0.26 -1.0 4,231,326 + MPMX20_04032 0.30 +0.9 4,231,326 + MPMX20_04032 0.30 -2.8 4,231,334 - MPMX20_04032 0.31 -1.5 4,231,334 - MPMX20_04032 0.31 +0.2 4,231,334 - MPMX20_04032 0.31 -0.2 4,231,334 - MPMX20_04032 0.31 -1.5 4,231,334 - MPMX20_04032 0.31 -3.7 4,231,363 - MPMX20_04032 0.34 -1.0 4,231,396 + MPMX20_04032 0.36 +0.0 4,231,430 + MPMX20_04032 0.39 -0.1 4,231,430 + MPMX20_04032 0.39 -1.3 4,231,440 + MPMX20_04032 0.40 +0.1 4,231,448 + MPMX20_04032 0.41 -0.2 4,231,451 - MPMX20_04032 0.41 +0.5 4,231,451 - MPMX20_04032 0.41 -1.0 4,231,465 + MPMX20_04032 0.42 +0.2 4,231,470 + MPMX20_04032 0.43 -0.1 4,231,521 + MPMX20_04032 0.47 +0.3 4,231,579 - MPMX20_04032 0.52 +0.1 4,231,624 - MPMX20_04032 0.56 -0.6 4,231,632 + MPMX20_04032 0.57 +0.2 4,231,651 - MPMX20_04032 0.59 +0.8 4,231,651 - MPMX20_04032 0.59 +2.6 4,231,750 + MPMX20_04032 0.67 -0.7 4,231,750 + MPMX20_04032 0.67 +0.3 4,231,750 + MPMX20_04032 0.67 -1.1 4,231,750 + MPMX20_04032 0.67 -1.0 4,231,750 + MPMX20_04032 0.67 -1.3 4,231,750 + MPMX20_04032 0.67 +1.1 4,231,750 + MPMX20_04032 0.67 -0.2 4,231,758 - MPMX20_04032 0.68 -1.3 4,231,758 - MPMX20_04032 0.68 -0.5 4,231,758 - MPMX20_04032 0.68 +0.5 4,231,758 - MPMX20_04032 0.68 -2.8 4,231,758 - MPMX20_04032 0.68 -1.8 4,231,778 + MPMX20_04032 0.70 -0.7 4,231,784 - MPMX20_04032 0.70 +1.0 4,231,786 - MPMX20_04032 0.71 +0.5 4,231,822 + MPMX20_04032 0.74 +1.1 4,231,832 + MPMX20_04032 0.75 -1.1 4,231,840 - MPMX20_04032 0.75 -1.7 4,231,840 - MPMX20_04032 0.75 +0.9 4,231,889 + MPMX20_04032 0.79 +0.7 4,231,900 + MPMX20_04032 0.80 +0.1 4,231,908 - MPMX20_04032 0.81 -1.2 4,231,908 - MPMX20_04032 0.81 +3.1 4,231,925 - MPMX20_04032 0.83 -2.0 4,231,932 - MPMX20_04032 0.83 +0.2 4,231,945 + MPMX20_04032 0.84 +2.0 4,231,950 + MPMX20_04032 0.85 -1.4 4,231,955 + MPMX20_04032 0.85 -0.8 4,231,959 - MPMX20_04032 0.86 -1.4 4,232,068 + -0.8 4,232,125 + -0.2 4,232,141 + +0.6 4,232,193 + +0.7 4,232,194 + -2.0 4,232,202 - -0.1 4,232,238 + +0.3 4,232,238 + -0.3 4,232,238 + -0.3 4,232,240 + -1.7 4,232,245 + -1.8 4,232,246 - +0.3 4,232,246 - +0.9 4,232,250 + +1.4 4,232,256 - -0.4 4,232,258 - -2.5 4,232,258 - -0.7 4,232,258 - +1.3 4,232,293 - MPMX20_04033 0.12 -0.8 4,232,334 + MPMX20_04033 0.17 -0.1 4,232,351 + MPMX20_04033 0.19 -0.0 4,232,361 - MPMX20_04033 0.20 -0.9 4,232,431 + MPMX20_04033 0.28 -3.5 4,232,437 - MPMX20_04033 0.28 -0.3 4,232,439 - MPMX20_04033 0.29 -2.0 4,232,439 - MPMX20_04033 0.29 -0.0 4,232,458 + MPMX20_04033 0.31 +0.5 4,232,479 - MPMX20_04033 0.33 -1.4 4,232,479 - MPMX20_04033 0.33 -1.6 4,232,622 - MPMX20_04033 0.49 -2.0 4,232,622 - MPMX20_04033 0.49 -0.6 4,232,675 + MPMX20_04033 0.55 -0.6 4,232,689 + MPMX20_04033 0.57 -0.5 4,232,689 + MPMX20_04033 0.57 -0.2 4,232,697 - MPMX20_04033 0.58 -1.5 4,232,697 - MPMX20_04033 0.58 +0.0 4,232,734 + MPMX20_04033 0.62 -1.2 4,232,846 + MPMX20_04033 0.74 -2.6 4,232,869 + MPMX20_04033 0.77 +0.8 4,232,914 + MPMX20_04033 0.82 -0.5 4,232,987 + -0.5 4,233,004 + +0.5 4,233,005 - -1.0 4,233,036 - -0.2 4,233,115 + +0.5
Or see this region's nucleotide sequence