Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03724

Experiment: L-Methionine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03722 and MPMX20_03723 are separated by 32 nucleotidesMPMX20_03723 and MPMX20_03724 are separated by 74 nucleotidesMPMX20_03724 and MPMX20_03725 are separated by 28 nucleotidesMPMX20_03725 and MPMX20_03726 are separated by 10 nucleotidesMPMX20_03726 and MPMX20_03727 are separated by 178 nucleotides MPMX20_03722: MPMX20_03722 - Inner membrane transport protein YqeG, at 3,924,767 to 3,925,996 _03722 MPMX20_03723: MPMX20_03723 - Leucine-responsive regulatory protein, at 3,926,029 to 3,926,544 _03723 MPMX20_03724: MPMX20_03724 - Homoserine/homoserine lactone efflux protein, at 3,926,619 to 3,927,230 _03724 MPMX20_03725: MPMX20_03725 - putative protein YjdJ, at 3,927,259 to 3,927,531 _03725 MPMX20_03726: MPMX20_03726 - hypothetical protein, at 3,927,542 to 3,927,772 _03726 MPMX20_03727: MPMX20_03727 - Sensor histidine kinase CitA, at 3,927,951 to 3,929,588 _03727 Position (kb) 3926 3927 3928Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 3925.797 kb on + strand, within MPMX20_03722at 3925.797 kb on + strand, within MPMX20_03722at 3925.805 kb on - strand, within MPMX20_03722at 3925.807 kb on + strand, within MPMX20_03722at 3925.812 kb on + strand, within MPMX20_03722at 3925.812 kb on + strand, within MPMX20_03722at 3925.820 kb on - strand, within MPMX20_03722at 3925.820 kb on - strand, within MPMX20_03722at 3925.820 kb on - strand, within MPMX20_03722at 3925.820 kb on - strand, within MPMX20_03722at 3925.950 kb on + strandat 3925.967 kb on - strandat 3926.008 kb on - strandat 3926.068 kb on + strandat 3926.068 kb on + strandat 3926.068 kb on + strandat 3926.261 kb on - strand, within MPMX20_03723at 3926.346 kb on - strand, within MPMX20_03723at 3926.413 kb on + strand, within MPMX20_03723at 3926.414 kb on - strand, within MPMX20_03723at 3926.419 kb on - strand, within MPMX20_03723at 3926.462 kb on + strand, within MPMX20_03723at 3926.462 kb on + strand, within MPMX20_03723at 3926.470 kb on - strand, within MPMX20_03723at 3926.500 kb on - strandat 3926.584 kb on + strandat 3926.594 kb on - strandat 3926.607 kb on + strandat 3926.641 kb on + strandat 3926.649 kb on - strandat 3926.698 kb on - strand, within MPMX20_03724at 3926.698 kb on - strand, within MPMX20_03724at 3926.747 kb on + strand, within MPMX20_03724at 3926.747 kb on - strand, within MPMX20_03724at 3926.753 kb on - strand, within MPMX20_03724at 3926.898 kb on - strand, within MPMX20_03724at 3926.898 kb on - strand, within MPMX20_03724at 3926.937 kb on - strand, within MPMX20_03724at 3926.968 kb on + strand, within MPMX20_03724at 3926.976 kb on - strand, within MPMX20_03724at 3926.976 kb on - strand, within MPMX20_03724at 3927.048 kb on + strand, within MPMX20_03724at 3927.048 kb on + strand, within MPMX20_03724at 3927.048 kb on + strand, within MPMX20_03724at 3927.048 kb on + strand, within MPMX20_03724at 3927.065 kb on + strand, within MPMX20_03724at 3927.085 kb on + strand, within MPMX20_03724at 3927.085 kb on + strand, within MPMX20_03724at 3927.085 kb on + strand, within MPMX20_03724at 3927.085 kb on + strand, within MPMX20_03724at 3927.093 kb on - strand, within MPMX20_03724at 3927.093 kb on - strand, within MPMX20_03724at 3927.093 kb on - strand, within MPMX20_03724at 3927.093 kb on - strand, within MPMX20_03724at 3927.095 kb on + strand, within MPMX20_03724at 3927.311 kb on + strand, within MPMX20_03725at 3927.370 kb on - strand, within MPMX20_03725at 3927.387 kb on + strand, within MPMX20_03725at 3927.388 kb on + strand, within MPMX20_03725at 3927.395 kb on - strand, within MPMX20_03725at 3927.395 kb on - strand, within MPMX20_03725at 3927.408 kb on + strand, within MPMX20_03725at 3927.418 kb on + strand, within MPMX20_03725at 3927.426 kb on + strand, within MPMX20_03725at 3927.433 kb on + strand, within MPMX20_03725at 3927.461 kb on - strand, within MPMX20_03725at 3927.476 kb on + strand, within MPMX20_03725at 3927.483 kb on + strand, within MPMX20_03725at 3927.498 kb on + strand, within MPMX20_03725at 3927.555 kb on + strandat 3927.557 kb on + strandat 3927.575 kb on - strand, within MPMX20_03726at 3927.578 kb on + strand, within MPMX20_03726at 3927.586 kb on - strand, within MPMX20_03726at 3927.586 kb on - strand, within MPMX20_03726at 3927.598 kb on - strand, within MPMX20_03726at 3927.622 kb on + strand, within MPMX20_03726at 3927.645 kb on + strand, within MPMX20_03726at 3927.663 kb on - strand, within MPMX20_03726at 3927.663 kb on - strand, within MPMX20_03726at 3927.687 kb on + strand, within MPMX20_03726at 3927.710 kb on - strand, within MPMX20_03726at 3927.710 kb on - strand, within MPMX20_03726at 3927.732 kb on + strand, within MPMX20_03726at 3927.732 kb on + strand, within MPMX20_03726at 3927.732 kb on + strand, within MPMX20_03726at 3927.740 kb on - strand, within MPMX20_03726at 3927.740 kb on - strand, within MPMX20_03726at 3927.755 kb on + strandat 3927.755 kb on + strandat 3927.755 kb on + strandat 3927.763 kb on - strandat 3927.763 kb on - strandat 3927.802 kb on + strandat 3927.808 kb on + strandat 3927.808 kb on + strandat 3927.808 kb on + strandat 3927.809 kb on + strandat 3927.809 kb on + strandat 3927.810 kb on - strandat 3927.810 kb on - strandat 3927.814 kb on + strandat 3927.814 kb on + strandat 3927.814 kb on + strandat 3927.815 kb on - strandat 3927.817 kb on - strandat 3927.817 kb on - strandat 3927.817 kb on - strandat 3927.822 kb on - strandat 3927.822 kb on - strandat 3927.822 kb on - strandat 3927.822 kb on - strandat 3927.834 kb on - strandat 3927.859 kb on + strandat 3927.867 kb on - strandat 3927.907 kb on + strandat 3927.907 kb on + strandat 3927.907 kb on + strandat 3927.907 kb on + strandat 3927.907 kb on + strandat 3927.910 kb on - strandat 3927.912 kb on + strandat 3927.912 kb on + strandat 3927.912 kb on + strandat 3927.912 kb on + strandat 3927.915 kb on - strandat 3927.920 kb on - strandat 3927.921 kb on + strandat 3927.921 kb on + strandat 3927.926 kb on + strandat 3927.929 kb on - strandat 3927.929 kb on - strandat 3927.929 kb on - strandat 3927.934 kb on - strandat 3927.934 kb on - strandat 3927.935 kb on + strandat 3927.939 kb on + strandat 3927.943 kb on - strandat 3927.943 kb on - strandat 3927.995 kb on + strandat 3927.995 kb on + strandat 3928.003 kb on + strandat 3928.003 kb on + strandat 3928.011 kb on - strandat 3928.020 kb on + strandat 3928.025 kb on + strandat 3928.028 kb on - strandat 3928.033 kb on - strandat 3928.033 kb on - strandat 3928.033 kb on - strandat 3928.033 kb on - strandat 3928.038 kb on - strandat 3928.072 kb on + strandat 3928.073 kb on - strandat 3928.080 kb on - strandat 3928.085 kb on + strandat 3928.092 kb on + strandat 3928.095 kb on - strandat 3928.123 kb on - strand, within MPMX20_03727at 3928.152 kb on + strand, within MPMX20_03727at 3928.168 kb on + strand, within MPMX20_03727at 3928.172 kb on + strand, within MPMX20_03727at 3928.178 kb on + strand, within MPMX20_03727at 3928.185 kb on - strand, within MPMX20_03727at 3928.187 kb on + strand, within MPMX20_03727at 3928.187 kb on + strand, within MPMX20_03727at 3928.195 kb on - strand, within MPMX20_03727at 3928.204 kb on + strand, within MPMX20_03727at 3928.212 kb on - strand, within MPMX20_03727at 3928.225 kb on + strand, within MPMX20_03727at 3928.225 kb on + strand, within MPMX20_03727at 3928.225 kb on + strand, within MPMX20_03727

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
remove
3,925,797 + MPMX20_03722 0.84 -0.1
3,925,797 + MPMX20_03722 0.84 +0.2
3,925,805 - MPMX20_03722 0.84 +1.9
3,925,807 + MPMX20_03722 0.85 -0.0
3,925,812 + MPMX20_03722 0.85 +0.2
3,925,812 + MPMX20_03722 0.85 +0.8
3,925,820 - MPMX20_03722 0.86 +1.1
3,925,820 - MPMX20_03722 0.86 +1.3
3,925,820 - MPMX20_03722 0.86 +1.6
3,925,820 - MPMX20_03722 0.86 -1.4
3,925,950 + +1.0
3,925,967 - +0.8
3,926,008 - +1.2
3,926,068 + +6.8
3,926,068 + +7.8
3,926,068 + +6.8
3,926,261 - MPMX20_03723 0.45 +7.6
3,926,346 - MPMX20_03723 0.61 +6.2
3,926,413 + MPMX20_03723 0.74 +7.1
3,926,414 - MPMX20_03723 0.75 +7.3
3,926,419 - MPMX20_03723 0.76 +6.7
3,926,462 + MPMX20_03723 0.84 +7.1
3,926,462 + MPMX20_03723 0.84 +6.2
3,926,470 - MPMX20_03723 0.85 +7.6
3,926,500 - +6.6
3,926,584 + +4.5
3,926,594 - +7.4
3,926,607 + +6.1
3,926,641 + +7.9
3,926,649 - +8.3
3,926,698 - MPMX20_03724 0.13 +4.8
3,926,698 - MPMX20_03724 0.13 +7.1
3,926,747 + MPMX20_03724 0.21 +7.5
3,926,747 - MPMX20_03724 0.21 +6.7
3,926,753 - MPMX20_03724 0.22 +6.3
3,926,898 - MPMX20_03724 0.46 +7.2
3,926,898 - MPMX20_03724 0.46 +7.8
3,926,937 - MPMX20_03724 0.52 +7.8
3,926,968 + MPMX20_03724 0.57 +7.0
3,926,976 - MPMX20_03724 0.58 +6.5
3,926,976 - MPMX20_03724 0.58 +7.1
3,927,048 + MPMX20_03724 0.70 +5.6
3,927,048 + MPMX20_03724 0.70 -0.7
3,927,048 + MPMX20_03724 0.70 +6.0
3,927,048 + MPMX20_03724 0.70 +8.2
3,927,065 + MPMX20_03724 0.73 +8.4
3,927,085 + MPMX20_03724 0.76 +6.1
3,927,085 + MPMX20_03724 0.76 +6.1
3,927,085 + MPMX20_03724 0.76 +6.5
3,927,085 + MPMX20_03724 0.76 +6.7
3,927,093 - MPMX20_03724 0.77 +8.4
3,927,093 - MPMX20_03724 0.77 +7.9
3,927,093 - MPMX20_03724 0.77 +7.4
3,927,093 - MPMX20_03724 0.77 +6.9
3,927,095 + MPMX20_03724 0.78 +5.5
3,927,311 + MPMX20_03725 0.19 +0.4
3,927,370 - MPMX20_03725 0.41 +0.2
3,927,387 + MPMX20_03725 0.47 -4.0
3,927,388 + MPMX20_03725 0.47 -0.9
3,927,395 - MPMX20_03725 0.50 -0.0
3,927,395 - MPMX20_03725 0.50 -0.2
3,927,408 + MPMX20_03725 0.55 +1.1
3,927,418 + MPMX20_03725 0.58 +1.9
3,927,426 + MPMX20_03725 0.61 +0.1
3,927,433 + MPMX20_03725 0.64 +0.6
3,927,461 - MPMX20_03725 0.74 +0.4
3,927,476 + MPMX20_03725 0.79 +0.2
3,927,483 + MPMX20_03725 0.82 +1.0
3,927,498 + MPMX20_03725 0.88 -0.2
3,927,555 + +0.8
3,927,557 + +0.6
3,927,575 - MPMX20_03726 0.14 -1.4
3,927,578 + MPMX20_03726 0.16 -0.2
3,927,586 - MPMX20_03726 0.19 +0.9
3,927,586 - MPMX20_03726 0.19 -0.2
3,927,598 - MPMX20_03726 0.24 +1.1
3,927,622 + MPMX20_03726 0.35 -1.0
3,927,645 + MPMX20_03726 0.45 -0.2
3,927,663 - MPMX20_03726 0.52 +1.4
3,927,663 - MPMX20_03726 0.52 -0.9
3,927,687 + MPMX20_03726 0.63 -0.6
3,927,710 - MPMX20_03726 0.73 +1.0
3,927,710 - MPMX20_03726 0.73 -1.1
3,927,732 + MPMX20_03726 0.82 -0.6
3,927,732 + MPMX20_03726 0.82 -1.7
3,927,732 + MPMX20_03726 0.82 -2.5
3,927,740 - MPMX20_03726 0.86 +0.3
3,927,740 - MPMX20_03726 0.86 +0.7
3,927,755 + +2.2
3,927,755 + +0.0
3,927,755 + +0.3
3,927,763 - +0.3
3,927,763 - -1.8
3,927,802 + -1.3
3,927,808 + -0.2
3,927,808 + -2.6
3,927,808 + -0.4
3,927,809 + +0.5
3,927,809 + +1.3
3,927,810 - +1.2
3,927,810 - -1.0
3,927,814 + +1.1
3,927,814 + -0.9
3,927,814 + +0.8
3,927,815 - +0.6
3,927,817 - +1.1
3,927,817 - +0.9
3,927,817 - +1.5
3,927,822 - -0.4
3,927,822 - -1.6
3,927,822 - -3.2
3,927,822 - -0.3
3,927,834 - -0.4
3,927,859 + +0.6
3,927,867 - +0.5
3,927,907 + -0.3
3,927,907 + -1.2
3,927,907 + +1.2
3,927,907 + -0.6
3,927,907 + -0.5
3,927,910 - -1.4
3,927,912 + -1.2
3,927,912 + +1.4
3,927,912 + -3.1
3,927,912 + -1.2
3,927,915 - +1.2
3,927,920 - +0.3
3,927,921 + -0.0
3,927,921 + -1.2
3,927,926 + -0.8
3,927,929 - +0.6
3,927,929 - -1.1
3,927,929 - +0.2
3,927,934 - +0.3
3,927,934 - +0.6
3,927,935 + -0.3
3,927,939 + +0.7
3,927,943 - +2.2
3,927,943 - -1.2
3,927,995 + -0.8
3,927,995 + +1.7
3,928,003 + -0.6
3,928,003 + -0.3
3,928,011 - +0.6
3,928,020 + -0.1
3,928,025 + +0.1
3,928,028 - -1.4
3,928,033 - +0.1
3,928,033 - -0.3
3,928,033 - -1.2
3,928,033 - -1.1
3,928,038 - -1.1
3,928,072 + -1.3
3,928,073 - +0.5
3,928,080 - -1.9
3,928,085 + +0.0
3,928,092 + +0.9
3,928,095 - -2.4
3,928,123 - MPMX20_03727 0.11 +1.5
3,928,152 + MPMX20_03727 0.12 -2.3
3,928,168 + MPMX20_03727 0.13 -1.7
3,928,172 + MPMX20_03727 0.13 +1.1
3,928,178 + MPMX20_03727 0.14 -0.2
3,928,185 - MPMX20_03727 0.14 +1.2
3,928,187 + MPMX20_03727 0.14 -0.7
3,928,187 + MPMX20_03727 0.14 +0.5
3,928,195 - MPMX20_03727 0.15 +1.0
3,928,204 + MPMX20_03727 0.15 -0.5
3,928,212 - MPMX20_03727 0.16 -1.8
3,928,225 + MPMX20_03727 0.17 +0.4
3,928,225 + MPMX20_03727 0.17 +0.2
3,928,225 + MPMX20_03727 0.17 -0.5

Or see this region's nucleotide sequence