Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03198 and MPMX20_03199 overlap by 4 nucleotides MPMX20_03199 and MPMX20_03200 overlap by 4 nucleotides MPMX20_03200 and MPMX20_03201 are separated by 88 nucleotides
MPMX20_03198: MPMX20_03198 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,367,335 to 3,368,192
_03198
MPMX20_03199: MPMX20_03199 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,368,189 to 3,368,965
_03199
MPMX20_03200: MPMX20_03200 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 3,368,962 to 3,370,632
_03200
MPMX20_03201: MPMX20_03201 - Isochorismate synthase MenF, at 3,370,721 to 3,372,016
_03201
Position (kb)
3368
3369
3370
3371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3368.038 kb on - strand, within MPMX20_03198 at 3368.132 kb on - strand at 3368.172 kb on + strand at 3368.172 kb on + strand at 3368.174 kb on - strand at 3368.182 kb on + strand at 3368.182 kb on + strand at 3368.190 kb on - strand at 3368.190 kb on - strand at 3368.277 kb on + strand, within MPMX20_03199 at 3368.308 kb on + strand, within MPMX20_03199 at 3368.322 kb on + strand, within MPMX20_03199 at 3368.322 kb on + strand, within MPMX20_03199 at 3368.456 kb on - strand, within MPMX20_03199 at 3368.479 kb on - strand, within MPMX20_03199 at 3368.586 kb on + strand, within MPMX20_03199 at 3368.586 kb on + strand, within MPMX20_03199 at 3368.594 kb on - strand, within MPMX20_03199 at 3368.662 kb on - strand, within MPMX20_03199 at 3368.794 kb on + strand, within MPMX20_03199 at 3368.833 kb on + strand, within MPMX20_03199 at 3368.835 kb on - strand, within MPMX20_03199 at 3368.857 kb on + strand, within MPMX20_03199 at 3368.929 kb on - strand at 3368.960 kb on + strand at 3369.073 kb on - strand at 3369.129 kb on - strand, within MPMX20_03200 at 3369.179 kb on + strand, within MPMX20_03200 at 3369.297 kb on + strand, within MPMX20_03200 at 3369.323 kb on + strand, within MPMX20_03200 at 3369.418 kb on - strand, within MPMX20_03200 at 3369.419 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.560 kb on + strand, within MPMX20_03200 at 3369.596 kb on + strand, within MPMX20_03200 at 3369.601 kb on + strand, within MPMX20_03200 at 3369.603 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.604 kb on - strand, within MPMX20_03200 at 3369.627 kb on + strand, within MPMX20_03200 at 3369.703 kb on - strand, within MPMX20_03200 at 3369.710 kb on + strand, within MPMX20_03200 at 3369.710 kb on + strand, within MPMX20_03200 at 3369.723 kb on - strand, within MPMX20_03200 at 3369.742 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.768 kb on + strand, within MPMX20_03200 at 3369.771 kb on - strand, within MPMX20_03200 at 3369.773 kb on + strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.776 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.853 kb on - strand, within MPMX20_03200 at 3369.941 kb on + strand, within MPMX20_03200 at 3369.944 kb on + strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3369.949 kb on - strand, within MPMX20_03200 at 3370.070 kb on - strand, within MPMX20_03200 at 3370.160 kb on + strand, within MPMX20_03200 at 3370.207 kb on + strand, within MPMX20_03200 at 3370.279 kb on - strand, within MPMX20_03200 at 3370.284 kb on - strand, within MPMX20_03200 at 3370.310 kb on - strand, within MPMX20_03200 at 3370.378 kb on - strand, within MPMX20_03200 at 3370.561 kb on + strand at 3370.584 kb on - strand at 3370.628 kb on + strand at 3370.629 kb on + strand at 3370.637 kb on - strand at 3370.663 kb on + strand at 3370.698 kb on + strand at 3370.718 kb on + strand at 3370.725 kb on + strand at 3370.742 kb on + strand at 3370.778 kb on + strand at 3370.778 kb on + strand at 3370.786 kb on - strand at 3370.789 kb on + strand at 3370.932 kb on + strand, within MPMX20_03201 at 3371.104 kb on + strand, within MPMX20_03201 at 3371.111 kb on - strand, within MPMX20_03201 at 3371.116 kb on + strand, within MPMX20_03201 at 3371.118 kb on - strand, within MPMX20_03201 at 3371.124 kb on - strand, within MPMX20_03201 at 3371.156 kb on - strand, within MPMX20_03201 at 3371.365 kb on - strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.404 kb on - strand, within MPMX20_03201 at 3371.406 kb on - strand, within MPMX20_03201 at 3371.422 kb on + strand, within MPMX20_03201 at 3371.443 kb on - strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.472 kb on - strand, within MPMX20_03201
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 3,368,038 - MPMX20_03198 0.82 -0.0 3,368,132 - -1.3 3,368,172 + +1.3 3,368,172 + +0.1 3,368,174 - -0.4 3,368,182 + -0.8 3,368,182 + -1.1 3,368,190 - +0.9 3,368,190 - +0.7 3,368,277 + MPMX20_03199 0.11 -0.7 3,368,308 + MPMX20_03199 0.15 -3.3 3,368,322 + MPMX20_03199 0.17 +0.1 3,368,322 + MPMX20_03199 0.17 -0.1 3,368,456 - MPMX20_03199 0.34 +0.8 3,368,479 - MPMX20_03199 0.37 -1.0 3,368,586 + MPMX20_03199 0.51 -0.2 3,368,586 + MPMX20_03199 0.51 +1.0 3,368,594 - MPMX20_03199 0.52 +0.7 3,368,662 - MPMX20_03199 0.61 +0.1 3,368,794 + MPMX20_03199 0.78 -0.4 3,368,833 + MPMX20_03199 0.83 +1.4 3,368,835 - MPMX20_03199 0.83 -2.0 3,368,857 + MPMX20_03199 0.86 -0.4 3,368,929 - -1.0 3,368,960 + -1.5 3,369,073 - +1.0 3,369,129 - MPMX20_03200 0.10 +0.0 3,369,179 + MPMX20_03200 0.13 +0.3 3,369,297 + MPMX20_03200 0.20 +0.3 3,369,323 + MPMX20_03200 0.22 +1.1 3,369,418 - MPMX20_03200 0.27 +0.1 3,369,419 + MPMX20_03200 0.27 +0.5 3,369,560 + MPMX20_03200 0.36 +0.6 3,369,560 + MPMX20_03200 0.36 -0.3 3,369,560 + MPMX20_03200 0.36 -0.0 3,369,560 + MPMX20_03200 0.36 +1.8 3,369,560 + MPMX20_03200 0.36 -0.9 3,369,596 + MPMX20_03200 0.38 +0.2 3,369,601 + MPMX20_03200 0.38 +1.7 3,369,603 - MPMX20_03200 0.38 +0.7 3,369,604 - MPMX20_03200 0.38 +0.0 3,369,604 - MPMX20_03200 0.38 +0.3 3,369,604 - MPMX20_03200 0.38 +0.7 3,369,627 + MPMX20_03200 0.40 +0.1 3,369,703 - MPMX20_03200 0.44 +0.3 3,369,710 + MPMX20_03200 0.45 +0.1 3,369,710 + MPMX20_03200 0.45 +1.2 3,369,723 - MPMX20_03200 0.46 +0.6 3,369,742 + MPMX20_03200 0.47 -0.2 3,369,768 + MPMX20_03200 0.48 -0.1 3,369,768 + MPMX20_03200 0.48 +0.2 3,369,768 + MPMX20_03200 0.48 +0.3 3,369,768 + MPMX20_03200 0.48 +0.2 3,369,768 + MPMX20_03200 0.48 +1.4 3,369,768 + MPMX20_03200 0.48 +0.6 3,369,768 + MPMX20_03200 0.48 +0.6 3,369,768 + MPMX20_03200 0.48 +0.5 3,369,771 - MPMX20_03200 0.48 +0.0 3,369,773 + MPMX20_03200 0.49 +1.4 3,369,776 - MPMX20_03200 0.49 -0.1 3,369,776 - MPMX20_03200 0.49 -0.1 3,369,776 - MPMX20_03200 0.49 +0.2 3,369,776 - MPMX20_03200 0.49 +0.1 3,369,776 - MPMX20_03200 0.49 -3.3 3,369,776 - MPMX20_03200 0.49 -1.1 3,369,776 - MPMX20_03200 0.49 +0.4 3,369,776 - MPMX20_03200 0.49 -0.3 3,369,776 - MPMX20_03200 0.49 +0.4 3,369,853 - MPMX20_03200 0.53 +0.3 3,369,853 - MPMX20_03200 0.53 +4.7 3,369,941 + MPMX20_03200 0.59 -1.3 3,369,944 + MPMX20_03200 0.59 +0.5 3,369,949 - MPMX20_03200 0.59 -0.7 3,369,949 - MPMX20_03200 0.59 +0.4 3,369,949 - MPMX20_03200 0.59 -0.2 3,370,070 - MPMX20_03200 0.66 -0.8 3,370,160 + MPMX20_03200 0.72 +0.2 3,370,207 + MPMX20_03200 0.75 +0.1 3,370,279 - MPMX20_03200 0.79 +0.2 3,370,284 - MPMX20_03200 0.79 +1.3 3,370,310 - MPMX20_03200 0.81 +0.4 3,370,378 - MPMX20_03200 0.85 -0.4 3,370,561 + -0.1 3,370,584 - +0.7 3,370,628 + -2.0 3,370,629 + +1.2 3,370,637 - +0.9 3,370,663 + -2.0 3,370,698 + +2.5 3,370,718 + +1.1 3,370,725 + -0.1 3,370,742 + +0.8 3,370,778 + +1.5 3,370,778 + -0.6 3,370,786 - -0.2 3,370,789 + +0.3 3,370,932 + MPMX20_03201 0.16 +0.3 3,371,104 + MPMX20_03201 0.30 +0.1 3,371,111 - MPMX20_03201 0.30 +1.2 3,371,116 + MPMX20_03201 0.30 +0.3 3,371,118 - MPMX20_03201 0.31 +0.6 3,371,124 - MPMX20_03201 0.31 -0.0 3,371,156 - MPMX20_03201 0.34 +0.7 3,371,365 - MPMX20_03201 0.50 +1.3 3,371,398 + MPMX20_03201 0.52 +0.5 3,371,398 + MPMX20_03201 0.52 +0.7 3,371,404 - MPMX20_03201 0.53 -0.8 3,371,406 - MPMX20_03201 0.53 -0.5 3,371,422 + MPMX20_03201 0.54 +0.1 3,371,443 - MPMX20_03201 0.56 +0.2 3,371,471 + MPMX20_03201 0.58 +0.4 3,371,471 + MPMX20_03201 0.58 +1.3 3,371,471 + MPMX20_03201 0.58 -0.8 3,371,472 - MPMX20_03201 0.58 -1.7
Or see this region's nucleotide sequence