Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02003

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02001 and MPMX20_02002 are separated by 65 nucleotidesMPMX20_02002 and MPMX20_02003 are separated by 59 nucleotidesMPMX20_02003 and MPMX20_02004 are separated by 105 nucleotides MPMX20_02001: MPMX20_02001 - Tyrosine--tRNA ligase, at 2,089,995 to 2,091,269 _02001 MPMX20_02002: MPMX20_02002 - Pyridoxal kinase PdxY, at 2,091,335 to 2,092,195 _02002 MPMX20_02003: MPMX20_02003 - Glutathione S-transferase GstA, at 2,092,255 to 2,092,860 _02003 MPMX20_02004: MPMX20_02004 - Dipeptide and tripeptide permease A, at 2,092,966 to 2,094,474 _02004 Position (kb) 2092 2093Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2091.358 kb on + strandat 2091.368 kb on + strandat 2091.376 kb on - strandat 2091.388 kb on - strandat 2091.415 kb on + strandat 2091.427 kb on + strand, within MPMX20_02002at 2091.436 kb on + strand, within MPMX20_02002at 2091.436 kb on + strand, within MPMX20_02002at 2091.444 kb on - strand, within MPMX20_02002at 2091.444 kb on - strand, within MPMX20_02002at 2091.467 kb on + strand, within MPMX20_02002at 2091.516 kb on + strand, within MPMX20_02002at 2091.521 kb on + strand, within MPMX20_02002at 2091.521 kb on + strand, within MPMX20_02002at 2091.528 kb on + strand, within MPMX20_02002at 2091.569 kb on - strand, within MPMX20_02002at 2091.574 kb on - strand, within MPMX20_02002at 2091.583 kb on + strand, within MPMX20_02002at 2091.616 kb on - strand, within MPMX20_02002at 2091.671 kb on + strand, within MPMX20_02002at 2091.720 kb on + strand, within MPMX20_02002at 2091.724 kb on - strand, within MPMX20_02002at 2091.808 kb on - strand, within MPMX20_02002at 2091.810 kb on + strand, within MPMX20_02002at 2091.818 kb on - strand, within MPMX20_02002at 2091.818 kb on - strand, within MPMX20_02002at 2091.818 kb on - strand, within MPMX20_02002at 2091.848 kb on + strand, within MPMX20_02002at 2091.888 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.893 kb on + strand, within MPMX20_02002at 2091.895 kb on + strand, within MPMX20_02002at 2091.901 kb on - strand, within MPMX20_02002at 2091.901 kb on - strand, within MPMX20_02002at 2091.901 kb on - strand, within MPMX20_02002at 2091.930 kb on - strand, within MPMX20_02002at 2092.236 kb on + strandat 2092.244 kb on - strandat 2092.246 kb on - strandat 2092.258 kb on + strandat 2092.258 kb on + strandat 2092.258 kb on + strandat 2092.266 kb on - strandat 2092.266 kb on - strandat 2092.271 kb on + strandat 2092.418 kb on + strand, within MPMX20_02003at 2092.511 kb on + strand, within MPMX20_02003at 2092.511 kb on - strand, within MPMX20_02003at 2092.517 kb on + strand, within MPMX20_02003at 2092.664 kb on + strand, within MPMX20_02003at 2092.685 kb on - strand, within MPMX20_02003at 2092.767 kb on + strand, within MPMX20_02003at 2092.772 kb on + strand, within MPMX20_02003at 2092.772 kb on + strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.799 kb on + strand, within MPMX20_02003at 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.817 kb on - strandat 2092.829 kb on - strandat 2092.889 kb on - strandat 2092.891 kb on + strandat 2092.899 kb on - strandat 2093.008 kb on + strandat 2093.028 kb on + strandat 2093.047 kb on + strandat 2093.083 kb on - strandat 2093.147 kb on + strand, within MPMX20_02004at 2093.155 kb on - strand, within MPMX20_02004at 2093.209 kb on + strand, within MPMX20_02004at 2093.268 kb on + strand, within MPMX20_02004at 2093.270 kb on - strand, within MPMX20_02004at 2093.271 kb on - strand, within MPMX20_02004at 2093.276 kb on - strand, within MPMX20_02004at 2093.344 kb on - strand, within MPMX20_02004at 2093.393 kb on - strand, within MPMX20_02004at 2093.504 kb on + strand, within MPMX20_02004at 2093.533 kb on + strand, within MPMX20_02004at 2093.533 kb on + strand, within MPMX20_02004at 2093.560 kb on - strand, within MPMX20_02004at 2093.596 kb on + strand, within MPMX20_02004at 2093.604 kb on - strand, within MPMX20_02004at 2093.618 kb on - strand, within MPMX20_02004at 2093.629 kb on - strand, within MPMX20_02004at 2093.666 kb on - strand, within MPMX20_02004at 2093.717 kb on + strand, within MPMX20_02004at 2093.722 kb on + strand, within MPMX20_02004at 2093.730 kb on - strand, within MPMX20_02004at 2093.730 kb on - strand, within MPMX20_02004at 2093.751 kb on - strand, within MPMX20_02004at 2093.752 kb on - strand, within MPMX20_02004

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,091,358 + -2.8
2,091,368 + +0.4
2,091,376 - -0.9
2,091,388 - -1.1
2,091,415 + -1.3
2,091,427 + MPMX20_02002 0.11 -3.3
2,091,436 + MPMX20_02002 0.12 -1.9
2,091,436 + MPMX20_02002 0.12 -0.3
2,091,444 - MPMX20_02002 0.13 -0.5
2,091,444 - MPMX20_02002 0.13 -1.2
2,091,467 + MPMX20_02002 0.15 -1.1
2,091,516 + MPMX20_02002 0.21 -0.8
2,091,521 + MPMX20_02002 0.22 +0.1
2,091,521 + MPMX20_02002 0.22 -1.2
2,091,528 + MPMX20_02002 0.22 +1.1
2,091,569 - MPMX20_02002 0.27 -0.5
2,091,574 - MPMX20_02002 0.28 -0.6
2,091,583 + MPMX20_02002 0.29 -1.4
2,091,616 - MPMX20_02002 0.33 -0.6
2,091,671 + MPMX20_02002 0.39 -1.1
2,091,720 + MPMX20_02002 0.45 -0.5
2,091,724 - MPMX20_02002 0.45 -0.3
2,091,808 - MPMX20_02002 0.55 -2.6
2,091,810 + MPMX20_02002 0.55 +0.7
2,091,818 - MPMX20_02002 0.56 -1.7
2,091,818 - MPMX20_02002 0.56 +0.3
2,091,818 - MPMX20_02002 0.56 +0.8
2,091,848 + MPMX20_02002 0.60 +2.4
2,091,888 + MPMX20_02002 0.64 -1.5
2,091,893 + MPMX20_02002 0.65 +0.1
2,091,893 + MPMX20_02002 0.65 -2.1
2,091,893 + MPMX20_02002 0.65 +1.1
2,091,893 + MPMX20_02002 0.65 +0.2
2,091,893 + MPMX20_02002 0.65 -0.9
2,091,893 + MPMX20_02002 0.65 +0.7
2,091,895 + MPMX20_02002 0.65 +1.4
2,091,901 - MPMX20_02002 0.66 +0.2
2,091,901 - MPMX20_02002 0.66 +1.6
2,091,901 - MPMX20_02002 0.66 -1.1
2,091,930 - MPMX20_02002 0.69 +1.0
2,092,236 + +0.5
2,092,244 - +0.2
2,092,246 - -2.9
2,092,258 + -0.8
2,092,258 + +0.4
2,092,258 + -0.4
2,092,266 - +0.5
2,092,266 - -0.2
2,092,271 + -0.3
2,092,418 + MPMX20_02003 0.27 +1.1
2,092,511 + MPMX20_02003 0.42 +1.0
2,092,511 - MPMX20_02003 0.42 -0.1
2,092,517 + MPMX20_02003 0.43 +1.0
2,092,664 + MPMX20_02003 0.67 +0.1
2,092,685 - MPMX20_02003 0.71 +0.3
2,092,767 + MPMX20_02003 0.84 +0.8
2,092,772 + MPMX20_02003 0.85 +2.1
2,092,772 + MPMX20_02003 0.85 -2.2
2,092,775 - MPMX20_02003 0.86 -0.1
2,092,775 - MPMX20_02003 0.86 +0.1
2,092,775 - MPMX20_02003 0.86 +0.3
2,092,799 + MPMX20_02003 0.90 +0.9
2,092,809 + -0.3
2,092,809 + -1.8
2,092,809 + -0.2
2,092,809 + +0.7
2,092,817 - +0.1
2,092,829 - +0.3
2,092,889 - +1.9
2,092,891 + -1.5
2,092,899 - +1.4
2,093,008 + +0.1
2,093,028 + -0.1
2,093,047 + -1.4
2,093,083 - +0.1
2,093,147 + MPMX20_02004 0.12 +0.6
2,093,155 - MPMX20_02004 0.13 +0.0
2,093,209 + MPMX20_02004 0.16 -2.1
2,093,268 + MPMX20_02004 0.20 -0.8
2,093,270 - MPMX20_02004 0.20 +0.0
2,093,271 - MPMX20_02004 0.20 +0.5
2,093,276 - MPMX20_02004 0.21 +0.1
2,093,344 - MPMX20_02004 0.25 +0.3
2,093,393 - MPMX20_02004 0.28 +0.6
2,093,504 + MPMX20_02004 0.36 -0.6
2,093,533 + MPMX20_02004 0.38 +1.5
2,093,533 + MPMX20_02004 0.38 -0.3
2,093,560 - MPMX20_02004 0.39 +3.4
2,093,596 + MPMX20_02004 0.42 +0.9
2,093,604 - MPMX20_02004 0.42 +0.3
2,093,618 - MPMX20_02004 0.43 +0.5
2,093,629 - MPMX20_02004 0.44 -0.7
2,093,666 - MPMX20_02004 0.46 +0.4
2,093,717 + MPMX20_02004 0.50 +0.1
2,093,722 + MPMX20_02004 0.50 +0.9
2,093,730 - MPMX20_02004 0.51 +1.1
2,093,730 - MPMX20_02004 0.51 +1.7
2,093,751 - MPMX20_02004 0.52 -0.2
2,093,752 - MPMX20_02004 0.52 +0.1

Or see this region's nucleotide sequence