Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01902

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01900 and MPMX20_01901 are separated by 4 nucleotidesMPMX20_01901 and MPMX20_01902 are separated by 97 nucleotidesMPMX20_01902 and MPMX20_01903 are separated by 33 nucleotidesMPMX20_01903 and MPMX20_01904 overlap by 1 nucleotides MPMX20_01900: MPMX20_01900 - Phenylalanine--tRNA ligase beta subunit, at 1,991,008 to 1,993,395 _01900 MPMX20_01901: MPMX20_01901 - Integration host factor subunit alpha, at 1,993,400 to 1,993,699 _01901 MPMX20_01902: MPMX20_01902 - Vitamin B12 import system permease protein BtuC, at 1,993,797 to 1,994,783 _01902 MPMX20_01903: MPMX20_01903 - Thioredoxin/glutathione peroxidase BtuE, at 1,994,817 to 1,995,368 _01903 MPMX20_01904: MPMX20_01904 - Vitamin B12 import ATP-binding protein BtuD, at 1,995,368 to 1,996,123 _01904 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1at 1993.397 kb on + strandat 1993.443 kb on + strand, within MPMX20_01901at 1993.521 kb on - strand, within MPMX20_01901at 1993.585 kb on - strand, within MPMX20_01901at 1993.639 kb on + strand, within MPMX20_01901at 1993.647 kb on - strand, within MPMX20_01901at 1993.684 kb on + strandat 1993.684 kb on + strandat 1993.684 kb on + strandat 1993.692 kb on - strandat 1993.692 kb on - strandat 1993.748 kb on + strandat 1993.752 kb on + strandat 1993.831 kb on + strandat 1993.831 kb on + strandat 1993.893 kb on - strandat 1993.893 kb on - strandat 1993.893 kb on - strandat 1993.900 kb on + strand, within MPMX20_01902at 1993.900 kb on + strand, within MPMX20_01902at 1993.908 kb on - strand, within MPMX20_01902at 1993.913 kb on + strand, within MPMX20_01902at 1993.918 kb on - strand, within MPMX20_01902at 1993.926 kb on - strand, within MPMX20_01902at 1994.070 kb on - strand, within MPMX20_01902at 1994.089 kb on - strand, within MPMX20_01902at 1994.094 kb on + strand, within MPMX20_01902at 1994.157 kb on - strand, within MPMX20_01902at 1994.216 kb on + strand, within MPMX20_01902at 1994.277 kb on + strand, within MPMX20_01902at 1994.277 kb on + strand, within MPMX20_01902at 1994.292 kb on + strand, within MPMX20_01902at 1994.292 kb on + strand, within MPMX20_01902at 1994.292 kb on + strand, within MPMX20_01902at 1994.315 kb on - strand, within MPMX20_01902at 1994.316 kb on - strand, within MPMX20_01902at 1994.330 kb on + strand, within MPMX20_01902at 1994.410 kb on + strand, within MPMX20_01902at 1994.418 kb on - strand, within MPMX20_01902at 1994.502 kb on + strand, within MPMX20_01902at 1994.502 kb on - strand, within MPMX20_01902at 1994.547 kb on - strand, within MPMX20_01902at 1994.562 kb on + strand, within MPMX20_01902at 1994.726 kb on - strandat 1994.728 kb on + strandat 1994.736 kb on - strandat 1994.778 kb on + strandat 1994.803 kb on + strandat 1994.811 kb on - strandat 1994.851 kb on + strandat 1994.851 kb on + strandat 1994.852 kb on + strandat 1994.895 kb on + strand, within MPMX20_01903at 1994.905 kb on + strand, within MPMX20_01903at 1995.025 kb on - strand, within MPMX20_01903at 1995.075 kb on - strand, within MPMX20_01903at 1995.086 kb on - strand, within MPMX20_01903at 1995.120 kb on + strand, within MPMX20_01903at 1995.201 kb on + strand, within MPMX20_01903at 1995.333 kb on + strandat 1995.343 kb on + strandat 1995.348 kb on - strandat 1995.385 kb on + strandat 1995.429 kb on - strandat 1995.497 kb on - strand, within MPMX20_01904at 1995.539 kb on - strand, within MPMX20_01904at 1995.539 kb on - strand, within MPMX20_01904at 1995.553 kb on - strand, within MPMX20_01904at 1995.613 kb on + strand, within MPMX20_01904

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,993,397 + -0.6
1,993,443 + MPMX20_01901 0.14 +1.4
1,993,521 - MPMX20_01901 0.40 -2.3
1,993,585 - MPMX20_01901 0.62 -2.2
1,993,639 + MPMX20_01901 0.80 -0.9
1,993,647 - MPMX20_01901 0.82 -0.6
1,993,684 + -1.7
1,993,684 + -1.9
1,993,684 + -2.8
1,993,692 - -1.4
1,993,692 - -2.5
1,993,748 + +0.4
1,993,752 + -0.3
1,993,831 + -0.8
1,993,831 + -0.2
1,993,893 - -2.2
1,993,893 - +0.4
1,993,893 - +0.3
1,993,900 + MPMX20_01902 0.10 -2.6
1,993,900 + MPMX20_01902 0.10 -1.7
1,993,908 - MPMX20_01902 0.11 -1.4
1,993,913 + MPMX20_01902 0.12 -0.7
1,993,918 - MPMX20_01902 0.12 -0.2
1,993,926 - MPMX20_01902 0.13 -0.3
1,994,070 - MPMX20_01902 0.28 -1.1
1,994,089 - MPMX20_01902 0.30 -0.5
1,994,094 + MPMX20_01902 0.30 +0.4
1,994,157 - MPMX20_01902 0.36 +1.0
1,994,216 + MPMX20_01902 0.42 -2.0
1,994,277 + MPMX20_01902 0.49 -0.8
1,994,277 + MPMX20_01902 0.49 -0.9
1,994,292 + MPMX20_01902 0.50 -0.2
1,994,292 + MPMX20_01902 0.50 -1.3
1,994,292 + MPMX20_01902 0.50 -1.5
1,994,315 - MPMX20_01902 0.52 -2.4
1,994,316 - MPMX20_01902 0.53 -0.5
1,994,330 + MPMX20_01902 0.54 -1.0
1,994,410 + MPMX20_01902 0.62 -2.0
1,994,418 - MPMX20_01902 0.63 -1.3
1,994,502 + MPMX20_01902 0.71 +0.1
1,994,502 - MPMX20_01902 0.71 -1.9
1,994,547 - MPMX20_01902 0.76 -0.2
1,994,562 + MPMX20_01902 0.78 -3.5
1,994,726 - -1.6
1,994,728 + -1.2
1,994,736 - +1.2
1,994,778 + -0.6
1,994,803 + -1.5
1,994,811 - -0.0
1,994,851 + -0.1
1,994,851 + -0.4
1,994,852 + -2.2
1,994,895 + MPMX20_01903 0.14 -1.8
1,994,905 + MPMX20_01903 0.16 +0.0
1,995,025 - MPMX20_01903 0.38 -0.2
1,995,075 - MPMX20_01903 0.47 +0.2
1,995,086 - MPMX20_01903 0.49 -0.3
1,995,120 + MPMX20_01903 0.55 -1.5
1,995,201 + MPMX20_01903 0.70 -0.4
1,995,333 + -0.2
1,995,343 + -1.9
1,995,348 - -0.8
1,995,385 + -1.0
1,995,429 - -0.5
1,995,497 - MPMX20_01904 0.17 +1.2
1,995,539 - MPMX20_01904 0.23 +0.1
1,995,539 - MPMX20_01904 0.23 -1.6
1,995,553 - MPMX20_01904 0.24 -0.3
1,995,613 + MPMX20_01904 0.32 -0.1

Or see this region's nucleotide sequence