Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01900 and MPMX20_01901 are separated by 4 nucleotides MPMX20_01901 and MPMX20_01902 are separated by 97 nucleotides MPMX20_01902 and MPMX20_01903 are separated by 33 nucleotides MPMX20_01903 and MPMX20_01904 overlap by 1 nucleotides
MPMX20_01900: MPMX20_01900 - Phenylalanine--tRNA ligase beta subunit, at 1,991,008 to 1,993,395
_01900
MPMX20_01901: MPMX20_01901 - Integration host factor subunit alpha, at 1,993,400 to 1,993,699
_01901
MPMX20_01902: MPMX20_01902 - Vitamin B12 import system permease protein BtuC, at 1,993,797 to 1,994,783
_01902
MPMX20_01903: MPMX20_01903 - Thioredoxin/glutathione peroxidase BtuE, at 1,994,817 to 1,995,368
_01903
MPMX20_01904: MPMX20_01904 - Vitamin B12 import ATP-binding protein BtuD, at 1,995,368 to 1,996,123
_01904
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1993.397 kb on + strand at 1993.443 kb on + strand, within MPMX20_01901 at 1993.521 kb on - strand, within MPMX20_01901 at 1993.585 kb on - strand, within MPMX20_01901 at 1993.639 kb on + strand, within MPMX20_01901 at 1993.647 kb on - strand, within MPMX20_01901 at 1993.684 kb on + strand at 1993.684 kb on + strand at 1993.684 kb on + strand at 1993.692 kb on - strand at 1993.692 kb on - strand at 1993.748 kb on + strand at 1993.752 kb on + strand at 1993.831 kb on + strand at 1993.831 kb on + strand at 1993.893 kb on - strand at 1993.893 kb on - strand at 1993.893 kb on - strand at 1993.900 kb on + strand, within MPMX20_01902 at 1993.900 kb on + strand, within MPMX20_01902 at 1993.908 kb on - strand, within MPMX20_01902 at 1993.913 kb on + strand, within MPMX20_01902 at 1993.918 kb on - strand, within MPMX20_01902 at 1993.926 kb on - strand, within MPMX20_01902 at 1994.070 kb on - strand, within MPMX20_01902 at 1994.089 kb on - strand, within MPMX20_01902 at 1994.094 kb on + strand, within MPMX20_01902 at 1994.157 kb on - strand, within MPMX20_01902 at 1994.216 kb on + strand, within MPMX20_01902 at 1994.277 kb on + strand, within MPMX20_01902 at 1994.277 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.292 kb on + strand, within MPMX20_01902 at 1994.315 kb on - strand, within MPMX20_01902 at 1994.316 kb on - strand, within MPMX20_01902 at 1994.330 kb on + strand, within MPMX20_01902 at 1994.410 kb on + strand, within MPMX20_01902 at 1994.418 kb on - strand, within MPMX20_01902 at 1994.502 kb on + strand, within MPMX20_01902 at 1994.502 kb on - strand, within MPMX20_01902 at 1994.547 kb on - strand, within MPMX20_01902 at 1994.562 kb on + strand, within MPMX20_01902 at 1994.726 kb on - strand at 1994.728 kb on + strand at 1994.736 kb on - strand at 1994.778 kb on + strand at 1994.803 kb on + strand at 1994.811 kb on - strand at 1994.851 kb on + strand at 1994.851 kb on + strand at 1994.852 kb on + strand at 1994.895 kb on + strand, within MPMX20_01903 at 1994.905 kb on + strand, within MPMX20_01903 at 1995.025 kb on - strand, within MPMX20_01903 at 1995.075 kb on - strand, within MPMX20_01903 at 1995.086 kb on - strand, within MPMX20_01903 at 1995.120 kb on + strand, within MPMX20_01903 at 1995.201 kb on + strand, within MPMX20_01903 at 1995.333 kb on + strand at 1995.343 kb on + strand at 1995.348 kb on - strand at 1995.385 kb on + strand at 1995.429 kb on - strand at 1995.497 kb on - strand, within MPMX20_01904 at 1995.539 kb on - strand, within MPMX20_01904 at 1995.539 kb on - strand, within MPMX20_01904 at 1995.553 kb on - strand, within MPMX20_01904 at 1995.613 kb on + strand, within MPMX20_01904
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,993,397 + -0.6 1,993,443 + MPMX20_01901 0.14 +1.4 1,993,521 - MPMX20_01901 0.40 -2.3 1,993,585 - MPMX20_01901 0.62 -2.2 1,993,639 + MPMX20_01901 0.80 -0.9 1,993,647 - MPMX20_01901 0.82 -0.6 1,993,684 + -1.7 1,993,684 + -1.9 1,993,684 + -2.8 1,993,692 - -1.4 1,993,692 - -2.5 1,993,748 + +0.4 1,993,752 + -0.3 1,993,831 + -0.8 1,993,831 + -0.2 1,993,893 - -2.2 1,993,893 - +0.4 1,993,893 - +0.3 1,993,900 + MPMX20_01902 0.10 -2.6 1,993,900 + MPMX20_01902 0.10 -1.7 1,993,908 - MPMX20_01902 0.11 -1.4 1,993,913 + MPMX20_01902 0.12 -0.7 1,993,918 - MPMX20_01902 0.12 -0.2 1,993,926 - MPMX20_01902 0.13 -0.3 1,994,070 - MPMX20_01902 0.28 -1.1 1,994,089 - MPMX20_01902 0.30 -0.5 1,994,094 + MPMX20_01902 0.30 +0.4 1,994,157 - MPMX20_01902 0.36 +1.0 1,994,216 + MPMX20_01902 0.42 -2.0 1,994,277 + MPMX20_01902 0.49 -0.8 1,994,277 + MPMX20_01902 0.49 -0.9 1,994,292 + MPMX20_01902 0.50 -0.2 1,994,292 + MPMX20_01902 0.50 -1.3 1,994,292 + MPMX20_01902 0.50 -1.5 1,994,315 - MPMX20_01902 0.52 -2.4 1,994,316 - MPMX20_01902 0.53 -0.5 1,994,330 + MPMX20_01902 0.54 -1.0 1,994,410 + MPMX20_01902 0.62 -2.0 1,994,418 - MPMX20_01902 0.63 -1.3 1,994,502 + MPMX20_01902 0.71 +0.1 1,994,502 - MPMX20_01902 0.71 -1.9 1,994,547 - MPMX20_01902 0.76 -0.2 1,994,562 + MPMX20_01902 0.78 -3.5 1,994,726 - -1.6 1,994,728 + -1.2 1,994,736 - +1.2 1,994,778 + -0.6 1,994,803 + -1.5 1,994,811 - -0.0 1,994,851 + -0.1 1,994,851 + -0.4 1,994,852 + -2.2 1,994,895 + MPMX20_01903 0.14 -1.8 1,994,905 + MPMX20_01903 0.16 +0.0 1,995,025 - MPMX20_01903 0.38 -0.2 1,995,075 - MPMX20_01903 0.47 +0.2 1,995,086 - MPMX20_01903 0.49 -0.3 1,995,120 + MPMX20_01903 0.55 -1.5 1,995,201 + MPMX20_01903 0.70 -0.4 1,995,333 + -0.2 1,995,343 + -1.9 1,995,348 - -0.8 1,995,385 + -1.0 1,995,429 - -0.5 1,995,497 - MPMX20_01904 0.17 +1.2 1,995,539 - MPMX20_01904 0.23 +0.1 1,995,539 - MPMX20_01904 0.23 -1.6 1,995,553 - MPMX20_01904 0.24 -0.3 1,995,613 + MPMX20_01904 0.32 -0.1
Or see this region's nucleotide sequence