Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03566

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03565 and MPMX20_03566 overlap by 4 nucleotidesMPMX20_03566 and MPMX20_03567 are separated by 54 nucleotidesMPMX20_03567 and MPMX20_03568 are separated by 152 nucleotides MPMX20_03565: MPMX20_03565 - 2-isopropylmalate synthase, at 3,759,287 to 3,760,936 _03565 MPMX20_03566: MPMX20_03566 - HTH-type transcriptional regulator NimR, at 3,760,933 to 3,761,697 _03566 MPMX20_03567: MPMX20_03567 - S-ribosylhomocysteine lyase, at 3,761,752 to 3,762,267 _03567 MPMX20_03568: MPMX20_03568 - Glutamate--cysteine ligase, at 3,762,420 to 3,763,964 _03568 Position (kb) 3760 3761 3762Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3759.941 kb on - strand, within MPMX20_03565at 3759.947 kb on + strand, within MPMX20_03565at 3760.040 kb on + strand, within MPMX20_03565at 3760.048 kb on - strand, within MPMX20_03565at 3760.074 kb on + strand, within MPMX20_03565at 3760.500 kb on + strand, within MPMX20_03565at 3760.508 kb on - strand, within MPMX20_03565at 3760.527 kb on - strand, within MPMX20_03565at 3760.584 kb on + strand, within MPMX20_03565at 3760.584 kb on + strand, within MPMX20_03565at 3760.608 kb on + strand, within MPMX20_03565at 3760.616 kb on - strand, within MPMX20_03565at 3760.616 kb on - strand, within MPMX20_03565at 3760.742 kb on + strand, within MPMX20_03565at 3760.742 kb on + strand, within MPMX20_03565at 3760.742 kb on + strand, within MPMX20_03565at 3760.750 kb on - strand, within MPMX20_03565at 3760.756 kb on + strand, within MPMX20_03565at 3760.791 kb on + strandat 3760.805 kb on - strandat 3760.829 kb on - strandat 3760.829 kb on - strandat 3760.889 kb on + strandat 3760.918 kb on + strandat 3760.926 kb on - strandat 3760.926 kb on - strandat 3760.926 kb on - strandat 3760.934 kb on - strandat 3760.959 kb on + strandat 3761.016 kb on - strand, within MPMX20_03566at 3761.032 kb on + strand, within MPMX20_03566at 3761.040 kb on - strand, within MPMX20_03566at 3761.047 kb on + strand, within MPMX20_03566at 3761.102 kb on + strand, within MPMX20_03566at 3761.102 kb on + strand, within MPMX20_03566at 3761.151 kb on + strand, within MPMX20_03566at 3761.183 kb on - strand, within MPMX20_03566at 3761.225 kb on - strand, within MPMX20_03566at 3761.272 kb on + strand, within MPMX20_03566at 3761.304 kb on + strand, within MPMX20_03566at 3761.307 kb on + strand, within MPMX20_03566at 3761.319 kb on + strand, within MPMX20_03566at 3761.319 kb on + strand, within MPMX20_03566at 3761.319 kb on + strand, within MPMX20_03566at 3761.319 kb on + strand, within MPMX20_03566at 3761.319 kb on + strand, within MPMX20_03566at 3761.327 kb on - strand, within MPMX20_03566at 3761.327 kb on - strand, within MPMX20_03566at 3761.327 kb on - strand, within MPMX20_03566at 3761.354 kb on - strand, within MPMX20_03566at 3761.375 kb on - strand, within MPMX20_03566at 3761.392 kb on + strand, within MPMX20_03566at 3761.400 kb on - strand, within MPMX20_03566at 3761.537 kb on - strand, within MPMX20_03566at 3761.571 kb on + strand, within MPMX20_03566at 3761.607 kb on - strand, within MPMX20_03566at 3761.635 kb on - strandat 3761.667 kb on + strandat 3761.668 kb on + strandat 3761.709 kb on + strandat 3761.717 kb on - strandat 3761.727 kb on + strandat 3761.845 kb on + strand, within MPMX20_03567at 3761.845 kb on + strand, within MPMX20_03567at 3761.853 kb on - strand, within MPMX20_03567at 3761.856 kb on + strand, within MPMX20_03567at 3761.872 kb on - strand, within MPMX20_03567at 3761.879 kb on + strand, within MPMX20_03567at 3761.882 kb on - strand, within MPMX20_03567at 3761.889 kb on + strand, within MPMX20_03567at 3761.897 kb on - strand, within MPMX20_03567at 3761.897 kb on - strand, within MPMX20_03567at 3761.909 kb on - strand, within MPMX20_03567at 3761.909 kb on - strand, within MPMX20_03567at 3762.000 kb on - strand, within MPMX20_03567at 3762.061 kb on - strand, within MPMX20_03567at 3762.074 kb on + strand, within MPMX20_03567at 3762.096 kb on + strand, within MPMX20_03567at 3762.096 kb on + strand, within MPMX20_03567at 3762.104 kb on - strand, within MPMX20_03567at 3762.104 kb on - strand, within MPMX20_03567at 3762.114 kb on - strand, within MPMX20_03567at 3762.199 kb on - strand, within MPMX20_03567at 3762.240 kb on - strandat 3762.243 kb on + strandat 3762.269 kb on + strandat 3762.270 kb on - strandat 3762.325 kb on + strandat 3762.335 kb on + strandat 3762.370 kb on + strandat 3762.496 kb on - strandat 3762.496 kb on - strandat 3762.683 kb on + strand, within MPMX20_03568

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,759,941 - MPMX20_03565 0.40 +0.7
3,759,947 + MPMX20_03565 0.40 +0.5
3,760,040 + MPMX20_03565 0.46 +0.5
3,760,048 - MPMX20_03565 0.46 -1.2
3,760,074 + MPMX20_03565 0.48 -0.7
3,760,500 + MPMX20_03565 0.74 +0.3
3,760,508 - MPMX20_03565 0.74 -0.4
3,760,527 - MPMX20_03565 0.75 -0.6
3,760,584 + MPMX20_03565 0.79 +0.9
3,760,584 + MPMX20_03565 0.79 -0.2
3,760,608 + MPMX20_03565 0.80 -1.2
3,760,616 - MPMX20_03565 0.81 +0.4
3,760,616 - MPMX20_03565 0.81 +0.3
3,760,742 + MPMX20_03565 0.88 +1.4
3,760,742 + MPMX20_03565 0.88 +0.4
3,760,742 + MPMX20_03565 0.88 +1.6
3,760,750 - MPMX20_03565 0.89 +1.6
3,760,756 + MPMX20_03565 0.89 -0.8
3,760,791 + -1.8
3,760,805 - +0.1
3,760,829 - -0.7
3,760,829 - -1.9
3,760,889 + +0.6
3,760,918 + -0.4
3,760,926 - +1.4
3,760,926 - -2.0
3,760,926 - -0.8
3,760,934 - +1.3
3,760,959 + +0.9
3,761,016 - MPMX20_03566 0.11 -1.4
3,761,032 + MPMX20_03566 0.13 -0.8
3,761,040 - MPMX20_03566 0.14 -0.6
3,761,047 + MPMX20_03566 0.15 -1.0
3,761,102 + MPMX20_03566 0.22 +0.9
3,761,102 + MPMX20_03566 0.22 -0.1
3,761,151 + MPMX20_03566 0.28 -1.1
3,761,183 - MPMX20_03566 0.33 -0.8
3,761,225 - MPMX20_03566 0.38 +0.4
3,761,272 + MPMX20_03566 0.44 +1.0
3,761,304 + MPMX20_03566 0.48 +0.1
3,761,307 + MPMX20_03566 0.49 -2.9
3,761,319 + MPMX20_03566 0.50 -0.0
3,761,319 + MPMX20_03566 0.50 +0.5
3,761,319 + MPMX20_03566 0.50 -1.8
3,761,319 + MPMX20_03566 0.50 -2.5
3,761,319 + MPMX20_03566 0.50 -0.6
3,761,327 - MPMX20_03566 0.52 +0.5
3,761,327 - MPMX20_03566 0.52 -1.6
3,761,327 - MPMX20_03566 0.52 -0.3
3,761,354 - MPMX20_03566 0.55 +0.2
3,761,375 - MPMX20_03566 0.58 -0.6
3,761,392 + MPMX20_03566 0.60 -2.2
3,761,400 - MPMX20_03566 0.61 +0.9
3,761,537 - MPMX20_03566 0.79 +0.2
3,761,571 + MPMX20_03566 0.83 +2.3
3,761,607 - MPMX20_03566 0.88 +0.9
3,761,635 - -2.0
3,761,667 + +1.3
3,761,668 + -0.6
3,761,709 + -0.0
3,761,717 - -0.6
3,761,727 + +0.6
3,761,845 + MPMX20_03567 0.18 +1.2
3,761,845 + MPMX20_03567 0.18 +0.7
3,761,853 - MPMX20_03567 0.20 -0.1
3,761,856 + MPMX20_03567 0.20 +0.8
3,761,872 - MPMX20_03567 0.23 -0.5
3,761,879 + MPMX20_03567 0.25 +0.2
3,761,882 - MPMX20_03567 0.25 -0.1
3,761,889 + MPMX20_03567 0.27 +0.5
3,761,897 - MPMX20_03567 0.28 +1.0
3,761,897 - MPMX20_03567 0.28 -2.0
3,761,909 - MPMX20_03567 0.30 +0.0
3,761,909 - MPMX20_03567 0.30 -1.0
3,762,000 - MPMX20_03567 0.48 -0.1
3,762,061 - MPMX20_03567 0.60 -0.5
3,762,074 + MPMX20_03567 0.62 +1.0
3,762,096 + MPMX20_03567 0.67 +0.5
3,762,096 + MPMX20_03567 0.67 +0.3
3,762,104 - MPMX20_03567 0.68 -1.1
3,762,104 - MPMX20_03567 0.68 +0.4
3,762,114 - MPMX20_03567 0.70 -1.9
3,762,199 - MPMX20_03567 0.87 +0.0
3,762,240 - -0.9
3,762,243 + -0.5
3,762,269 + -0.0
3,762,270 - -2.4
3,762,325 + -0.8
3,762,335 + -0.4
3,762,370 + -0.6
3,762,496 - -0.8
3,762,496 - -0.8
3,762,683 + MPMX20_03568 0.17 -1.4

Or see this region's nucleotide sequence