Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03565 and MPMX20_03566 overlap by 4 nucleotides MPMX20_03566 and MPMX20_03567 are separated by 54 nucleotides MPMX20_03567 and MPMX20_03568 are separated by 152 nucleotides
MPMX20_03565: MPMX20_03565 - 2-isopropylmalate synthase, at 3,759,287 to 3,760,936
_03565
MPMX20_03566: MPMX20_03566 - HTH-type transcriptional regulator NimR, at 3,760,933 to 3,761,697
_03566
MPMX20_03567: MPMX20_03567 - S-ribosylhomocysteine lyase, at 3,761,752 to 3,762,267
_03567
MPMX20_03568: MPMX20_03568 - Glutamate--cysteine ligase, at 3,762,420 to 3,763,964
_03568
Position (kb)
3760
3761
3762 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3759.941 kb on - strand, within MPMX20_03565 at 3759.947 kb on + strand, within MPMX20_03565 at 3760.040 kb on + strand, within MPMX20_03565 at 3760.048 kb on - strand, within MPMX20_03565 at 3760.074 kb on + strand, within MPMX20_03565 at 3760.500 kb on + strand, within MPMX20_03565 at 3760.508 kb on - strand, within MPMX20_03565 at 3760.527 kb on - strand, within MPMX20_03565 at 3760.584 kb on + strand, within MPMX20_03565 at 3760.584 kb on + strand, within MPMX20_03565 at 3760.608 kb on + strand, within MPMX20_03565 at 3760.616 kb on - strand, within MPMX20_03565 at 3760.616 kb on - strand, within MPMX20_03565 at 3760.742 kb on + strand, within MPMX20_03565 at 3760.742 kb on + strand, within MPMX20_03565 at 3760.742 kb on + strand, within MPMX20_03565 at 3760.750 kb on - strand, within MPMX20_03565 at 3760.756 kb on + strand, within MPMX20_03565 at 3760.791 kb on + strand at 3760.805 kb on - strand at 3760.829 kb on - strand at 3760.829 kb on - strand at 3760.889 kb on + strand at 3760.918 kb on + strand at 3760.926 kb on - strand at 3760.926 kb on - strand at 3760.926 kb on - strand at 3760.934 kb on - strand at 3760.959 kb on + strand at 3761.016 kb on - strand, within MPMX20_03566 at 3761.032 kb on + strand, within MPMX20_03566 at 3761.040 kb on - strand, within MPMX20_03566 at 3761.047 kb on + strand, within MPMX20_03566 at 3761.102 kb on + strand, within MPMX20_03566 at 3761.102 kb on + strand, within MPMX20_03566 at 3761.151 kb on + strand, within MPMX20_03566 at 3761.183 kb on - strand, within MPMX20_03566 at 3761.225 kb on - strand, within MPMX20_03566 at 3761.272 kb on + strand, within MPMX20_03566 at 3761.304 kb on + strand, within MPMX20_03566 at 3761.307 kb on + strand, within MPMX20_03566 at 3761.319 kb on + strand, within MPMX20_03566 at 3761.319 kb on + strand, within MPMX20_03566 at 3761.319 kb on + strand, within MPMX20_03566 at 3761.319 kb on + strand, within MPMX20_03566 at 3761.319 kb on + strand, within MPMX20_03566 at 3761.327 kb on - strand, within MPMX20_03566 at 3761.327 kb on - strand, within MPMX20_03566 at 3761.327 kb on - strand, within MPMX20_03566 at 3761.354 kb on - strand, within MPMX20_03566 at 3761.375 kb on - strand, within MPMX20_03566 at 3761.392 kb on + strand, within MPMX20_03566 at 3761.400 kb on - strand, within MPMX20_03566 at 3761.537 kb on - strand, within MPMX20_03566 at 3761.571 kb on + strand, within MPMX20_03566 at 3761.607 kb on - strand, within MPMX20_03566 at 3761.635 kb on - strand at 3761.667 kb on + strand at 3761.668 kb on + strand at 3761.709 kb on + strand at 3761.717 kb on - strand at 3761.727 kb on + strand at 3761.845 kb on + strand, within MPMX20_03567 at 3761.845 kb on + strand, within MPMX20_03567 at 3761.853 kb on - strand, within MPMX20_03567 at 3761.856 kb on + strand, within MPMX20_03567 at 3761.872 kb on - strand, within MPMX20_03567 at 3761.879 kb on + strand, within MPMX20_03567 at 3761.882 kb on - strand, within MPMX20_03567 at 3761.889 kb on + strand, within MPMX20_03567 at 3761.897 kb on - strand, within MPMX20_03567 at 3761.897 kb on - strand, within MPMX20_03567 at 3761.909 kb on - strand, within MPMX20_03567 at 3761.909 kb on - strand, within MPMX20_03567 at 3762.000 kb on - strand, within MPMX20_03567 at 3762.061 kb on - strand, within MPMX20_03567 at 3762.074 kb on + strand, within MPMX20_03567 at 3762.096 kb on + strand, within MPMX20_03567 at 3762.096 kb on + strand, within MPMX20_03567 at 3762.104 kb on - strand, within MPMX20_03567 at 3762.104 kb on - strand, within MPMX20_03567 at 3762.114 kb on - strand, within MPMX20_03567 at 3762.199 kb on - strand, within MPMX20_03567 at 3762.240 kb on - strand at 3762.243 kb on + strand at 3762.269 kb on + strand at 3762.270 kb on - strand at 3762.325 kb on + strand at 3762.335 kb on + strand at 3762.370 kb on + strand at 3762.496 kb on - strand at 3762.496 kb on - strand at 3762.683 kb on + strand, within MPMX20_03568
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 3,759,941 - MPMX20_03565 0.40 +0.7 3,759,947 + MPMX20_03565 0.40 +0.5 3,760,040 + MPMX20_03565 0.46 +0.5 3,760,048 - MPMX20_03565 0.46 -1.2 3,760,074 + MPMX20_03565 0.48 -0.7 3,760,500 + MPMX20_03565 0.74 +0.3 3,760,508 - MPMX20_03565 0.74 -0.4 3,760,527 - MPMX20_03565 0.75 -0.6 3,760,584 + MPMX20_03565 0.79 +0.9 3,760,584 + MPMX20_03565 0.79 -0.2 3,760,608 + MPMX20_03565 0.80 -1.2 3,760,616 - MPMX20_03565 0.81 +0.4 3,760,616 - MPMX20_03565 0.81 +0.3 3,760,742 + MPMX20_03565 0.88 +1.4 3,760,742 + MPMX20_03565 0.88 +0.4 3,760,742 + MPMX20_03565 0.88 +1.6 3,760,750 - MPMX20_03565 0.89 +1.6 3,760,756 + MPMX20_03565 0.89 -0.8 3,760,791 + -1.8 3,760,805 - +0.1 3,760,829 - -0.7 3,760,829 - -1.9 3,760,889 + +0.6 3,760,918 + -0.4 3,760,926 - +1.4 3,760,926 - -2.0 3,760,926 - -0.8 3,760,934 - +1.3 3,760,959 + +0.9 3,761,016 - MPMX20_03566 0.11 -1.4 3,761,032 + MPMX20_03566 0.13 -0.8 3,761,040 - MPMX20_03566 0.14 -0.6 3,761,047 + MPMX20_03566 0.15 -1.0 3,761,102 + MPMX20_03566 0.22 +0.9 3,761,102 + MPMX20_03566 0.22 -0.1 3,761,151 + MPMX20_03566 0.28 -1.1 3,761,183 - MPMX20_03566 0.33 -0.8 3,761,225 - MPMX20_03566 0.38 +0.4 3,761,272 + MPMX20_03566 0.44 +1.0 3,761,304 + MPMX20_03566 0.48 +0.1 3,761,307 + MPMX20_03566 0.49 -2.9 3,761,319 + MPMX20_03566 0.50 -0.0 3,761,319 + MPMX20_03566 0.50 +0.5 3,761,319 + MPMX20_03566 0.50 -1.8 3,761,319 + MPMX20_03566 0.50 -2.5 3,761,319 + MPMX20_03566 0.50 -0.6 3,761,327 - MPMX20_03566 0.52 +0.5 3,761,327 - MPMX20_03566 0.52 -1.6 3,761,327 - MPMX20_03566 0.52 -0.3 3,761,354 - MPMX20_03566 0.55 +0.2 3,761,375 - MPMX20_03566 0.58 -0.6 3,761,392 + MPMX20_03566 0.60 -2.2 3,761,400 - MPMX20_03566 0.61 +0.9 3,761,537 - MPMX20_03566 0.79 +0.2 3,761,571 + MPMX20_03566 0.83 +2.3 3,761,607 - MPMX20_03566 0.88 +0.9 3,761,635 - -2.0 3,761,667 + +1.3 3,761,668 + -0.6 3,761,709 + -0.0 3,761,717 - -0.6 3,761,727 + +0.6 3,761,845 + MPMX20_03567 0.18 +1.2 3,761,845 + MPMX20_03567 0.18 +0.7 3,761,853 - MPMX20_03567 0.20 -0.1 3,761,856 + MPMX20_03567 0.20 +0.8 3,761,872 - MPMX20_03567 0.23 -0.5 3,761,879 + MPMX20_03567 0.25 +0.2 3,761,882 - MPMX20_03567 0.25 -0.1 3,761,889 + MPMX20_03567 0.27 +0.5 3,761,897 - MPMX20_03567 0.28 +1.0 3,761,897 - MPMX20_03567 0.28 -2.0 3,761,909 - MPMX20_03567 0.30 +0.0 3,761,909 - MPMX20_03567 0.30 -1.0 3,762,000 - MPMX20_03567 0.48 -0.1 3,762,061 - MPMX20_03567 0.60 -0.5 3,762,074 + MPMX20_03567 0.62 +1.0 3,762,096 + MPMX20_03567 0.67 +0.5 3,762,096 + MPMX20_03567 0.67 +0.3 3,762,104 - MPMX20_03567 0.68 -1.1 3,762,104 - MPMX20_03567 0.68 +0.4 3,762,114 - MPMX20_03567 0.70 -1.9 3,762,199 - MPMX20_03567 0.87 +0.0 3,762,240 - -0.9 3,762,243 + -0.5 3,762,269 + -0.0 3,762,270 - -2.4 3,762,325 + -0.8 3,762,335 + -0.4 3,762,370 + -0.6 3,762,496 - -0.8 3,762,496 - -0.8 3,762,683 + MPMX20_03568 0.17 -1.4
Or see this region's nucleotide sequence