Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02993

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02990 and MPMX20_02991 are separated by 226 nucleotidesMPMX20_02991 and MPMX20_02992 are separated by 53 nucleotidesMPMX20_02992 and MPMX20_02993 are separated by 49 nucleotidesMPMX20_02993 and MPMX20_02994 are separated by 168 nucleotides MPMX20_02990: MPMX20_02990 - putative FMN/FAD exporter YeeO, at 3,123,410 to 3,124,852 _02990 MPMX20_02991: MPMX20_02991 - tRNA-Asn, at 3,125,079 to 3,125,154 _02991 MPMX20_02992: MPMX20_02992 - hypothetical protein, at 3,125,208 to 3,125,540 _02992 MPMX20_02993: MPMX20_02993 - hypothetical protein, at 3,125,590 to 3,125,925 _02993 MPMX20_02994: MPMX20_02994 - Inner membrane protein YeeA, at 3,126,094 to 3,127,152 _02994 Position (kb) 3125 3126Strain fitness (log2 ratio) -3 -2 -1 0 1at 3124.600 kb on + strand, within MPMX20_02990at 3124.600 kb on + strand, within MPMX20_02990at 3124.600 kb on + strand, within MPMX20_02990at 3124.603 kb on - strand, within MPMX20_02990at 3124.618 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.755 kb on - strandat 3124.788 kb on - strandat 3124.800 kb on + strandat 3124.829 kb on - strandat 3124.831 kb on + strandat 3124.847 kb on + strandat 3124.938 kb on + strandat 3125.035 kb on - strandat 3125.217 kb on + strandat 3125.247 kb on - strand, within MPMX20_02992at 3125.299 kb on - strand, within MPMX20_02992at 3125.303 kb on - strand, within MPMX20_02992at 3125.324 kb on + strand, within MPMX20_02992at 3125.374 kb on + strand, within MPMX20_02992at 3125.376 kb on - strand, within MPMX20_02992at 3125.382 kb on - strand, within MPMX20_02992at 3125.412 kb on - strand, within MPMX20_02992at 3125.425 kb on + strand, within MPMX20_02992at 3125.425 kb on + strand, within MPMX20_02992at 3125.668 kb on - strand, within MPMX20_02993at 3125.668 kb on - strand, within MPMX20_02993at 3125.678 kb on - strand, within MPMX20_02993at 3125.737 kb on + strand, within MPMX20_02993at 3125.756 kb on - strand, within MPMX20_02993at 3125.804 kb on + strand, within MPMX20_02993at 3125.897 kb on + strandat 3125.918 kb on - strandat 3125.918 kb on - strandat 3125.978 kb on + strandat 3126.022 kb on - strandat 3126.150 kb on + strandat 3126.150 kb on + strandat 3126.150 kb on + strandat 3126.223 kb on - strand, within MPMX20_02994at 3126.232 kb on - strand, within MPMX20_02994at 3126.242 kb on + strand, within MPMX20_02994at 3126.255 kb on - strand, within MPMX20_02994at 3126.308 kb on + strand, within MPMX20_02994at 3126.345 kb on + strand, within MPMX20_02994at 3126.345 kb on + strand, within MPMX20_02994at 3126.353 kb on - strand, within MPMX20_02994at 3126.353 kb on - strand, within MPMX20_02994at 3126.493 kb on + strand, within MPMX20_02994at 3126.625 kb on - strand, within MPMX20_02994at 3126.644 kb on - strand, within MPMX20_02994at 3126.755 kb on + strand, within MPMX20_02994at 3126.774 kb on + strand, within MPMX20_02994at 3126.838 kb on - strand, within MPMX20_02994at 3126.856 kb on - strand, within MPMX20_02994at 3126.882 kb on + strand, within MPMX20_02994at 3126.904 kb on + strand, within MPMX20_02994at 3126.912 kb on - strand, within MPMX20_02994at 3126.912 kb on - strand, within MPMX20_02994

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,124,600 + MPMX20_02990 0.82 +0.4
3,124,600 + MPMX20_02990 0.82 -1.1
3,124,600 + MPMX20_02990 0.82 -1.8
3,124,603 - MPMX20_02990 0.83 +1.0
3,124,618 + MPMX20_02990 0.84 -0.2
3,124,663 + MPMX20_02990 0.87 -1.4
3,124,663 + MPMX20_02990 0.87 -2.5
3,124,663 + MPMX20_02990 0.87 +1.0
3,124,671 - MPMX20_02990 0.87 -0.2
3,124,671 - MPMX20_02990 0.87 -0.5
3,124,671 - MPMX20_02990 0.87 -1.1
3,124,755 - +0.1
3,124,788 - -2.5
3,124,800 + -1.2
3,124,829 - -0.1
3,124,831 + +1.7
3,124,847 + +0.9
3,124,938 + -1.9
3,125,035 - -0.4
3,125,217 + -0.3
3,125,247 - MPMX20_02992 0.12 +0.5
3,125,299 - MPMX20_02992 0.27 -2.7
3,125,303 - MPMX20_02992 0.29 +0.2
3,125,324 + MPMX20_02992 0.35 -0.3
3,125,374 + MPMX20_02992 0.50 +0.0
3,125,376 - MPMX20_02992 0.50 -0.3
3,125,382 - MPMX20_02992 0.52 -0.7
3,125,412 - MPMX20_02992 0.61 +0.0
3,125,425 + MPMX20_02992 0.65 -0.5
3,125,425 + MPMX20_02992 0.65 -0.3
3,125,668 - MPMX20_02993 0.23 -2.5
3,125,668 - MPMX20_02993 0.23 -1.7
3,125,678 - MPMX20_02993 0.26 -0.9
3,125,737 + MPMX20_02993 0.44 -0.8
3,125,756 - MPMX20_02993 0.49 -0.6
3,125,804 + MPMX20_02993 0.64 -2.8
3,125,897 + -0.3
3,125,918 - -0.8
3,125,918 - -1.6
3,125,978 + -0.6
3,126,022 - -0.2
3,126,150 + +0.8
3,126,150 + -0.1
3,126,150 + -0.3
3,126,223 - MPMX20_02994 0.12 -1.4
3,126,232 - MPMX20_02994 0.13 +0.4
3,126,242 + MPMX20_02994 0.14 -1.2
3,126,255 - MPMX20_02994 0.15 +1.1
3,126,308 + MPMX20_02994 0.20 +0.3
3,126,345 + MPMX20_02994 0.24 -0.1
3,126,345 + MPMX20_02994 0.24 +0.5
3,126,353 - MPMX20_02994 0.24 +0.7
3,126,353 - MPMX20_02994 0.24 +0.0
3,126,493 + MPMX20_02994 0.38 +0.1
3,126,625 - MPMX20_02994 0.50 +1.0
3,126,644 - MPMX20_02994 0.52 +0.1
3,126,755 + MPMX20_02994 0.62 -0.5
3,126,774 + MPMX20_02994 0.64 -0.5
3,126,838 - MPMX20_02994 0.70 -0.4
3,126,856 - MPMX20_02994 0.72 -0.9
3,126,882 + MPMX20_02994 0.74 +0.2
3,126,904 + MPMX20_02994 0.76 +0.4
3,126,912 - MPMX20_02994 0.77 +0.1
3,126,912 - MPMX20_02994 0.77 -0.1

Or see this region's nucleotide sequence