Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00085

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00084 and MPMX20_00085 are separated by 3 nucleotidesMPMX20_00085 and MPMX20_00086 are separated by 4 nucleotides MPMX20_00084: MPMX20_00084 - ATP-dependent DNA helicase RecG, at 85,957 to 88,038 _00084 MPMX20_00085: MPMX20_00085 - tRNA (guanosine(18)-2'-O)-methyltransferase, at 88,042 to 88,731 _00085 MPMX20_00086: MPMX20_00086 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 88,736 to 90,850 _00086 Position (kb) 88 89Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 87.101 kb on - strand, within MPMX20_00084at 87.151 kb on + strand, within MPMX20_00084at 87.219 kb on + strand, within MPMX20_00084at 87.284 kb on + strand, within MPMX20_00084at 87.292 kb on - strand, within MPMX20_00084at 87.339 kb on + strand, within MPMX20_00084at 87.363 kb on + strand, within MPMX20_00084at 87.371 kb on - strand, within MPMX20_00084at 87.404 kb on + strand, within MPMX20_00084at 87.411 kb on + strand, within MPMX20_00084at 87.441 kb on - strand, within MPMX20_00084at 87.441 kb on - strand, within MPMX20_00084at 87.457 kb on - strand, within MPMX20_00084at 87.463 kb on + strand, within MPMX20_00084at 87.463 kb on + strand, within MPMX20_00084at 87.464 kb on + strand, within MPMX20_00084at 87.493 kb on - strand, within MPMX20_00084at 87.511 kb on + strand, within MPMX20_00084at 87.552 kb on + strand, within MPMX20_00084at 87.609 kb on + strand, within MPMX20_00084at 87.617 kb on - strand, within MPMX20_00084at 87.627 kb on - strand, within MPMX20_00084at 87.689 kb on + strand, within MPMX20_00084at 87.694 kb on + strand, within MPMX20_00084at 87.694 kb on + strand, within MPMX20_00084at 87.694 kb on + strand, within MPMX20_00084at 87.697 kb on - strand, within MPMX20_00084at 87.697 kb on - strand, within MPMX20_00084at 87.702 kb on + strand, within MPMX20_00084at 87.702 kb on - strand, within MPMX20_00084at 87.702 kb on - strand, within MPMX20_00084at 87.792 kb on - strand, within MPMX20_00084at 87.794 kb on + strand, within MPMX20_00084at 87.816 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.829 kb on + strand, within MPMX20_00084at 87.837 kb on - strandat 87.837 kb on - strandat 88.062 kb on - strandat 88.152 kb on - strand, within MPMX20_00085at 88.256 kb on - strand, within MPMX20_00085at 88.284 kb on + strand, within MPMX20_00085at 88.390 kb on + strand, within MPMX20_00085at 88.448 kb on - strand, within MPMX20_00085at 88.599 kb on + strand, within MPMX20_00085at 88.601 kb on + strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.607 kb on - strand, within MPMX20_00085at 88.609 kb on - strand, within MPMX20_00085at 88.636 kb on + strand, within MPMX20_00085at 88.656 kb on + strand, within MPMX20_00085at 88.656 kb on + strand, within MPMX20_00085at 88.687 kb on - strandat 88.922 kb on + strandat 88.987 kb on + strand, within MPMX20_00086at 89.012 kb on - strand, within MPMX20_00086at 89.081 kb on - strand, within MPMX20_00086at 89.113 kb on + strand, within MPMX20_00086at 89.146 kb on - strand, within MPMX20_00086at 89.146 kb on - strand, within MPMX20_00086at 89.420 kb on - strand, within MPMX20_00086

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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87,101 - MPMX20_00084 0.55 -1.3
87,151 + MPMX20_00084 0.57 -1.3
87,219 + MPMX20_00084 0.61 -3.2
87,284 + MPMX20_00084 0.64 -0.2
87,292 - MPMX20_00084 0.64 -2.2
87,339 + MPMX20_00084 0.66 -0.3
87,363 + MPMX20_00084 0.68 -3.2
87,371 - MPMX20_00084 0.68 +0.9
87,404 + MPMX20_00084 0.70 -2.3
87,411 + MPMX20_00084 0.70 -0.1
87,441 - MPMX20_00084 0.71 -2.1
87,441 - MPMX20_00084 0.71 -0.3
87,457 - MPMX20_00084 0.72 -2.7
87,463 + MPMX20_00084 0.72 -1.2
87,463 + MPMX20_00084 0.72 -1.1
87,464 + MPMX20_00084 0.72 -3.4
87,493 - MPMX20_00084 0.74 -3.1
87,511 + MPMX20_00084 0.75 -1.7
87,552 + MPMX20_00084 0.77 -0.8
87,609 + MPMX20_00084 0.79 -2.6
87,617 - MPMX20_00084 0.80 +0.3
87,627 - MPMX20_00084 0.80 -2.6
87,689 + MPMX20_00084 0.83 +1.7
87,694 + MPMX20_00084 0.83 -2.5
87,694 + MPMX20_00084 0.83 -1.2
87,694 + MPMX20_00084 0.83 -2.4
87,697 - MPMX20_00084 0.84 -0.1
87,697 - MPMX20_00084 0.84 -2.2
87,702 + MPMX20_00084 0.84 -1.5
87,702 - MPMX20_00084 0.84 -1.4
87,702 - MPMX20_00084 0.84 -0.7
87,792 - MPMX20_00084 0.88 +0.3
87,794 + MPMX20_00084 0.88 -1.3
87,816 + MPMX20_00084 0.89 -2.2
87,829 + MPMX20_00084 0.90 -2.1
87,829 + MPMX20_00084 0.90 -0.5
87,829 + MPMX20_00084 0.90 -1.4
87,837 - -1.5
87,837 - -0.8
88,062 - +0.0
88,152 - MPMX20_00085 0.16 -0.2
88,256 - MPMX20_00085 0.31 -0.9
88,284 + MPMX20_00085 0.35 -1.5
88,390 + MPMX20_00085 0.50 -1.2
88,448 - MPMX20_00085 0.59 -2.1
88,599 + MPMX20_00085 0.81 -0.9
88,601 + MPMX20_00085 0.81 -0.5
88,607 - MPMX20_00085 0.82 -0.8
88,607 - MPMX20_00085 0.82 +0.6
88,607 - MPMX20_00085 0.82 -1.1
88,607 - MPMX20_00085 0.82 -2.0
88,607 - MPMX20_00085 0.82 -2.5
88,609 - MPMX20_00085 0.82 -2.5
88,636 + MPMX20_00085 0.86 -1.4
88,656 + MPMX20_00085 0.89 -1.0
88,656 + MPMX20_00085 0.89 -0.3
88,687 - -0.4
88,922 + -1.4
88,987 + MPMX20_00086 0.12 -4.3
89,012 - MPMX20_00086 0.13 -4.0
89,081 - MPMX20_00086 0.16 -3.1
89,113 + MPMX20_00086 0.18 -2.7
89,146 - MPMX20_00086 0.19 -3.0
89,146 - MPMX20_00086 0.19 -0.5
89,420 - MPMX20_00086 0.32 -0.2

Or see this region's nucleotide sequence