Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03808

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03806 and MPMX20_03807 overlap by 1 nucleotidesMPMX20_03807 and MPMX20_03808 overlap by 35 nucleotidesMPMX20_03808 and MPMX20_03809 are separated by 17 nucleotidesMPMX20_03809 and MPMX20_03810 are separated by 21 nucleotides MPMX20_03806: MPMX20_03806 - hypothetical protein, at 4,012,515 to 4,013,075 _03806 MPMX20_03807: MPMX20_03807 - Putative pre-16S rRNA nuclease, at 4,013,075 to 4,013,491 _03807 MPMX20_03808: MPMX20_03808 - putative protein YggR, at 4,013,457 to 4,014,482 _03808 MPMX20_03809: MPMX20_03809 - Pyridoxal phosphate homeostasis protein, at 4,014,500 to 4,015,201 _03809 MPMX20_03810: MPMX20_03810 - hypothetical protein, at 4,015,223 to 4,015,789 _03810 Position (kb) 4013 4014 4015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4012.478 kb on - strandat 4012.584 kb on + strand, within MPMX20_03806at 4012.890 kb on + strand, within MPMX20_03806at 4012.895 kb on + strand, within MPMX20_03806at 4012.945 kb on + strand, within MPMX20_03806at 4012.976 kb on - strand, within MPMX20_03806at 4012.990 kb on - strand, within MPMX20_03806at 4013.032 kb on + strandat 4013.069 kb on + strandat 4013.482 kb on + strandat 4013.482 kb on + strandat 4013.482 kb on + strandat 4013.482 kb on + strandat 4013.482 kb on + strandat 4013.490 kb on - strandat 4013.490 kb on - strandat 4013.490 kb on - strandat 4013.499 kb on + strandat 4013.530 kb on + strandat 4013.538 kb on - strandat 4013.548 kb on - strandat 4013.548 kb on - strandat 4013.553 kb on - strandat 4013.635 kb on + strand, within MPMX20_03808at 4013.665 kb on + strand, within MPMX20_03808at 4013.673 kb on - strand, within MPMX20_03808at 4013.673 kb on - strand, within MPMX20_03808at 4013.771 kb on - strand, within MPMX20_03808at 4013.789 kb on + strand, within MPMX20_03808at 4013.812 kb on + strand, within MPMX20_03808at 4013.840 kb on - strand, within MPMX20_03808at 4013.889 kb on - strand, within MPMX20_03808at 4013.918 kb on - strand, within MPMX20_03808at 4013.957 kb on - strand, within MPMX20_03808at 4013.967 kb on + strand, within MPMX20_03808at 4013.969 kb on + strand, within MPMX20_03808at 4013.982 kb on - strand, within MPMX20_03808at 4013.993 kb on + strand, within MPMX20_03808at 4014.000 kb on - strand, within MPMX20_03808at 4014.029 kb on - strand, within MPMX20_03808at 4014.034 kb on - strand, within MPMX20_03808at 4014.037 kb on + strand, within MPMX20_03808at 4014.064 kb on + strand, within MPMX20_03808at 4014.184 kb on - strand, within MPMX20_03808at 4014.184 kb on - strand, within MPMX20_03808at 4014.184 kb on - strand, within MPMX20_03808at 4014.228 kb on - strand, within MPMX20_03808at 4014.307 kb on + strand, within MPMX20_03808at 4014.353 kb on - strand, within MPMX20_03808at 4014.394 kb on - strandat 4014.394 kb on - strandat 4014.399 kb on - strandat 4014.399 kb on - strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.425 kb on + strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.433 kb on - strandat 4014.446 kb on + strandat 4014.481 kb on + strandat 4014.481 kb on + strandat 4014.507 kb on + strandat 4014.515 kb on - strandat 4014.519 kb on + strandat 4014.527 kb on - strandat 4014.607 kb on + strand, within MPMX20_03809at 4014.652 kb on + strand, within MPMX20_03809at 4014.705 kb on + strand, within MPMX20_03809at 4014.715 kb on + strand, within MPMX20_03809at 4014.715 kb on + strand, within MPMX20_03809at 4014.758 kb on - strand, within MPMX20_03809at 4014.855 kb on + strand, within MPMX20_03809at 4014.959 kb on + strand, within MPMX20_03809at 4014.962 kb on - strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.969 kb on + strand, within MPMX20_03809at 4014.977 kb on - strand, within MPMX20_03809at 4014.984 kb on + strand, within MPMX20_03809at 4015.014 kb on - strand, within MPMX20_03809at 4015.055 kb on - strand, within MPMX20_03809at 4015.136 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.146 kb on + strandat 4015.154 kb on - strandat 4015.154 kb on - strandat 4015.228 kb on - strandat 4015.254 kb on + strandat 4015.264 kb on + strandat 4015.272 kb on - strandat 4015.279 kb on + strandat 4015.360 kb on + strand, within MPMX20_03810at 4015.410 kb on + strand, within MPMX20_03810at 4015.428 kb on + strand, within MPMX20_03810at 4015.462 kb on + strand, within MPMX20_03810at 4015.470 kb on - strand, within MPMX20_03810at 4015.470 kb on - strand, within MPMX20_03810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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4,012,478 - -1.1
4,012,584 + MPMX20_03806 0.12 -0.8
4,012,890 + MPMX20_03806 0.67 -1.0
4,012,895 + MPMX20_03806 0.68 -1.9
4,012,945 + MPMX20_03806 0.77 -0.8
4,012,976 - MPMX20_03806 0.82 -0.1
4,012,990 - MPMX20_03806 0.85 +0.6
4,013,032 + -2.6
4,013,069 + -0.4
4,013,482 + -1.3
4,013,482 + +1.5
4,013,482 + +2.2
4,013,482 + -1.1
4,013,482 + +0.5
4,013,490 - +0.1
4,013,490 - -0.8
4,013,490 - -0.8
4,013,499 + +0.2
4,013,530 + +0.0
4,013,538 - +1.2
4,013,548 - -0.3
4,013,548 - -0.7
4,013,553 - +0.2
4,013,635 + MPMX20_03808 0.17 -0.1
4,013,665 + MPMX20_03808 0.20 -0.2
4,013,673 - MPMX20_03808 0.21 +1.2
4,013,673 - MPMX20_03808 0.21 +0.6
4,013,771 - MPMX20_03808 0.31 +0.5
4,013,789 + MPMX20_03808 0.32 -0.9
4,013,812 + MPMX20_03808 0.35 -0.3
4,013,840 - MPMX20_03808 0.37 -0.1
4,013,889 - MPMX20_03808 0.42 +0.3
4,013,918 - MPMX20_03808 0.45 -0.4
4,013,957 - MPMX20_03808 0.49 +0.2
4,013,967 + MPMX20_03808 0.50 +0.4
4,013,969 + MPMX20_03808 0.50 -0.5
4,013,982 - MPMX20_03808 0.51 +0.5
4,013,993 + MPMX20_03808 0.52 -1.4
4,014,000 - MPMX20_03808 0.53 -0.9
4,014,029 - MPMX20_03808 0.56 -1.3
4,014,034 - MPMX20_03808 0.56 -1.9
4,014,037 + MPMX20_03808 0.57 -0.6
4,014,064 + MPMX20_03808 0.59 -0.2
4,014,184 - MPMX20_03808 0.71 +1.1
4,014,184 - MPMX20_03808 0.71 +0.6
4,014,184 - MPMX20_03808 0.71 -0.4
4,014,228 - MPMX20_03808 0.75 -0.7
4,014,307 + MPMX20_03808 0.83 -0.4
4,014,353 - MPMX20_03808 0.87 -1.5
4,014,394 - -0.2
4,014,394 - -0.2
4,014,399 - -1.7
4,014,399 - -2.1
4,014,425 + +0.6
4,014,425 + +0.2
4,014,425 + -1.5
4,014,425 + +1.2
4,014,425 + +0.5
4,014,425 + -1.2
4,014,425 + -0.1
4,014,433 - -1.9
4,014,433 - +0.8
4,014,433 - +1.2
4,014,433 - +0.6
4,014,446 + -0.1
4,014,481 + -2.0
4,014,481 + -3.6
4,014,507 + -0.1
4,014,515 - -1.9
4,014,519 + +0.8
4,014,527 - +0.0
4,014,607 + MPMX20_03809 0.15 -0.2
4,014,652 + MPMX20_03809 0.22 +0.2
4,014,705 + MPMX20_03809 0.29 +2.6
4,014,715 + MPMX20_03809 0.31 -1.8
4,014,715 + MPMX20_03809 0.31 -1.6
4,014,758 - MPMX20_03809 0.37 +0.8
4,014,855 + MPMX20_03809 0.51 +0.2
4,014,959 + MPMX20_03809 0.65 -2.5
4,014,962 - MPMX20_03809 0.66 -1.7
4,014,969 + MPMX20_03809 0.67 -0.9
4,014,969 + MPMX20_03809 0.67 -1.4
4,014,969 + MPMX20_03809 0.67 +0.6
4,014,969 + MPMX20_03809 0.67 -1.2
4,014,969 + MPMX20_03809 0.67 +2.7
4,014,969 + MPMX20_03809 0.67 -0.4
4,014,977 - MPMX20_03809 0.68 +0.3
4,014,984 + MPMX20_03809 0.69 +0.4
4,015,014 - MPMX20_03809 0.73 -1.1
4,015,055 - MPMX20_03809 0.79 -0.4
4,015,136 + +2.3
4,015,146 + -0.7
4,015,146 + -1.0
4,015,146 + +0.3
4,015,146 + -0.2
4,015,146 + -2.8
4,015,146 + -0.7
4,015,154 - -1.3
4,015,154 - -2.0
4,015,228 - +0.1
4,015,254 + +1.6
4,015,264 + -0.9
4,015,272 - -1.9
4,015,279 + -0.8
4,015,360 + MPMX20_03810 0.24 +0.1
4,015,410 + MPMX20_03810 0.33 -0.5
4,015,428 + MPMX20_03810 0.36 -0.3
4,015,462 + MPMX20_03810 0.42 -0.7
4,015,470 - MPMX20_03810 0.44 -1.2
4,015,470 - MPMX20_03810 0.44 -2.1

Or see this region's nucleotide sequence