Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01944

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01942 and MPMX20_01943 are separated by 313 nucleotidesMPMX20_01943 and MPMX20_01944 are separated by 8 nucleotidesMPMX20_01944 and MPMX20_01945 are separated by 9 nucleotidesMPMX20_01945 and MPMX20_01946 overlap by 26 nucleotides MPMX20_01942: MPMX20_01942 - HTH-type transcriptional repressor BluR, at 2,038,207 to 2,038,935 _01942 MPMX20_01943: MPMX20_01943 - Protein SufA, at 2,039,249 to 2,039,617 _01943 MPMX20_01944: MPMX20_01944 - FeS cluster assembly protein SufB, at 2,039,626 to 2,041,116 _01944 MPMX20_01945: MPMX20_01945 - putative ATP-dependent transporter SufC, at 2,041,126 to 2,041,872 _01945 MPMX20_01946: MPMX20_01946 - FeS cluster assembly protein SufD, at 2,041,847 to 2,043,118 _01946 Position (kb) 2039 2040 2041 2042Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2038.629 kb on + strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.637 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.665 kb on - strand, within MPMX20_01942at 2038.704 kb on + strand, within MPMX20_01942at 2038.719 kb on - strand, within MPMX20_01942at 2038.745 kb on - strand, within MPMX20_01942at 2038.876 kb on - strandat 2038.906 kb on - strandat 2039.077 kb on + strandat 2039.119 kb on + strandat 2039.119 kb on + strandat 2039.127 kb on - strandat 2039.180 kb on + strandat 2039.180 kb on + strandat 2039.220 kb on - strandat 2039.230 kb on + strandat 2039.239 kb on + strandat 2039.247 kb on - strandat 2039.268 kb on + strandat 2039.276 kb on - strandat 2039.287 kb on + strand, within MPMX20_01943at 2039.306 kb on - strand, within MPMX20_01943at 2039.313 kb on - strand, within MPMX20_01943at 2039.361 kb on + strand, within MPMX20_01943at 2039.379 kb on + strand, within MPMX20_01943at 2039.402 kb on + strand, within MPMX20_01943at 2039.519 kb on + strand, within MPMX20_01943at 2039.519 kb on + strand, within MPMX20_01943at 2039.527 kb on - strand, within MPMX20_01943at 2039.548 kb on - strand, within MPMX20_01943at 2039.584 kb on - strandat 2039.605 kb on - strandat 2039.612 kb on - strandat 2039.621 kb on + strandat 2039.629 kb on - strandat 2039.828 kb on - strand, within MPMX20_01944at 2039.897 kb on + strand, within MPMX20_01944at 2039.900 kb on + strand, within MPMX20_01944at 2039.902 kb on + strand, within MPMX20_01944at 2039.933 kb on + strand, within MPMX20_01944at 2039.958 kb on + strand, within MPMX20_01944at 2040.013 kb on - strand, within MPMX20_01944at 2040.045 kb on - strand, within MPMX20_01944at 2040.155 kb on + strand, within MPMX20_01944at 2040.198 kb on - strand, within MPMX20_01944at 2040.341 kb on + strand, within MPMX20_01944at 2040.349 kb on - strand, within MPMX20_01944at 2040.399 kb on + strand, within MPMX20_01944at 2040.418 kb on - strand, within MPMX20_01944at 2040.425 kb on - strand, within MPMX20_01944at 2040.432 kb on + strand, within MPMX20_01944at 2040.463 kb on + strand, within MPMX20_01944at 2040.473 kb on - strand, within MPMX20_01944at 2040.478 kb on + strand, within MPMX20_01944at 2040.478 kb on + strand, within MPMX20_01944at 2040.486 kb on - strand, within MPMX20_01944at 2040.486 kb on - strand, within MPMX20_01944at 2040.486 kb on - strand, within MPMX20_01944at 2040.504 kb on - strand, within MPMX20_01944at 2040.517 kb on + strand, within MPMX20_01944at 2040.525 kb on - strand, within MPMX20_01944at 2040.525 kb on - strand, within MPMX20_01944at 2040.536 kb on + strand, within MPMX20_01944at 2040.536 kb on + strand, within MPMX20_01944at 2040.544 kb on - strand, within MPMX20_01944at 2040.544 kb on - strand, within MPMX20_01944at 2040.544 kb on - strand, within MPMX20_01944at 2040.546 kb on + strand, within MPMX20_01944at 2040.553 kb on + strand, within MPMX20_01944at 2040.561 kb on - strand, within MPMX20_01944at 2040.578 kb on - strand, within MPMX20_01944at 2040.620 kb on + strand, within MPMX20_01944at 2040.628 kb on - strand, within MPMX20_01944at 2040.628 kb on - strand, within MPMX20_01944at 2040.644 kb on - strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.654 kb on + strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.662 kb on - strand, within MPMX20_01944at 2040.670 kb on - strand, within MPMX20_01944at 2040.729 kb on + strand, within MPMX20_01944at 2040.771 kb on - strand, within MPMX20_01944at 2040.772 kb on + strand, within MPMX20_01944at 2040.790 kb on - strand, within MPMX20_01944at 2040.793 kb on - strand, within MPMX20_01944at 2040.795 kb on + strand, within MPMX20_01944at 2040.795 kb on + strand, within MPMX20_01944at 2040.830 kb on + strand, within MPMX20_01944at 2040.838 kb on - strand, within MPMX20_01944at 2040.838 kb on - strand, within MPMX20_01944at 2040.838 kb on - strand, within MPMX20_01944at 2040.838 kb on - strand, within MPMX20_01944at 2040.874 kb on + strand, within MPMX20_01944at 2040.918 kb on + strand, within MPMX20_01944at 2040.926 kb on - strand, within MPMX20_01944at 2040.935 kb on - strand, within MPMX20_01944at 2040.963 kb on + strand, within MPMX20_01944at 2040.973 kb on - strandat 2041.001 kb on - strandat 2041.036 kb on - strandat 2041.036 kb on - strandat 2041.088 kb on + strandat 2041.089 kb on + strandat 2041.094 kb on + strandat 2041.094 kb on + strandat 2041.183 kb on - strandat 2041.212 kb on - strand, within MPMX20_01945at 2041.354 kb on + strand, within MPMX20_01945at 2041.362 kb on - strand, within MPMX20_01945at 2041.394 kb on + strand, within MPMX20_01945at 2041.457 kb on + strand, within MPMX20_01945at 2041.473 kb on - strand, within MPMX20_01945at 2041.534 kb on + strand, within MPMX20_01945at 2041.534 kb on + strand, within MPMX20_01945at 2041.534 kb on + strand, within MPMX20_01945at 2041.613 kb on + strand, within MPMX20_01945at 2041.613 kb on + strand, within MPMX20_01945at 2041.613 kb on + strand, within MPMX20_01945at 2041.616 kb on - strand, within MPMX20_01945at 2041.663 kb on + strand, within MPMX20_01945at 2041.734 kb on + strand, within MPMX20_01945at 2041.757 kb on - strand, within MPMX20_01945at 2041.821 kb on + strandat 2041.821 kb on + strandat 2041.821 kb on + strandat 2041.829 kb on - strandat 2041.842 kb on + strandat 2041.842 kb on + strandat 2041.842 kb on + strandat 2041.844 kb on + strandat 2041.850 kb on - strandat 2041.866 kb on + strandat 2041.866 kb on + strandat 2041.874 kb on - strandat 2041.909 kb on + strandat 2042.025 kb on - strand, within MPMX20_01946at 2042.050 kb on + strand, within MPMX20_01946at 2042.077 kb on + strand, within MPMX20_01946

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
2,038,629 + MPMX20_01942 0.58 -0.6
2,038,637 - MPMX20_01942 0.59 -2.2
2,038,637 - MPMX20_01942 0.59 -1.5
2,038,665 - MPMX20_01942 0.63 -0.5
2,038,665 - MPMX20_01942 0.63 +0.1
2,038,704 + MPMX20_01942 0.68 -0.5
2,038,719 - MPMX20_01942 0.70 +1.1
2,038,745 - MPMX20_01942 0.74 -2.9
2,038,876 - -1.1
2,038,906 - -3.9
2,039,077 + -0.6
2,039,119 + -0.2
2,039,119 + +0.4
2,039,127 - +0.5
2,039,180 + -1.0
2,039,180 + -2.9
2,039,220 - -0.5
2,039,230 + -1.0
2,039,239 + +0.9
2,039,247 - -1.6
2,039,268 + -0.6
2,039,276 - -2.5
2,039,287 + MPMX20_01943 0.10 -0.3
2,039,306 - MPMX20_01943 0.15 -2.4
2,039,313 - MPMX20_01943 0.17 -0.3
2,039,361 + MPMX20_01943 0.30 -0.6
2,039,379 + MPMX20_01943 0.35 -0.5
2,039,402 + MPMX20_01943 0.41 -1.3
2,039,519 + MPMX20_01943 0.73 -3.2
2,039,519 + MPMX20_01943 0.73 -1.6
2,039,527 - MPMX20_01943 0.75 +0.4
2,039,548 - MPMX20_01943 0.81 -0.3
2,039,584 - +0.9
2,039,605 - -3.3
2,039,612 - -1.1
2,039,621 + +2.9
2,039,629 - -1.4
2,039,828 - MPMX20_01944 0.14 +0.6
2,039,897 + MPMX20_01944 0.18 +0.6
2,039,900 + MPMX20_01944 0.18 -0.9
2,039,902 + MPMX20_01944 0.19 +0.8
2,039,933 + MPMX20_01944 0.21 -0.6
2,039,958 + MPMX20_01944 0.22 +0.3
2,040,013 - MPMX20_01944 0.26 -0.1
2,040,045 - MPMX20_01944 0.28 -1.4
2,040,155 + MPMX20_01944 0.35 -1.6
2,040,198 - MPMX20_01944 0.38 -1.3
2,040,341 + MPMX20_01944 0.48 -0.2
2,040,349 - MPMX20_01944 0.48 -1.0
2,040,399 + MPMX20_01944 0.52 -0.1
2,040,418 - MPMX20_01944 0.53 -2.3
2,040,425 - MPMX20_01944 0.54 -1.4
2,040,432 + MPMX20_01944 0.54 -1.2
2,040,463 + MPMX20_01944 0.56 -2.0
2,040,473 - MPMX20_01944 0.57 +0.9
2,040,478 + MPMX20_01944 0.57 -0.8
2,040,478 + MPMX20_01944 0.57 -0.2
2,040,486 - MPMX20_01944 0.58 -1.3
2,040,486 - MPMX20_01944 0.58 +0.1
2,040,486 - MPMX20_01944 0.58 +0.3
2,040,504 - MPMX20_01944 0.59 -2.4
2,040,517 + MPMX20_01944 0.60 +0.2
2,040,525 - MPMX20_01944 0.60 +0.1
2,040,525 - MPMX20_01944 0.60 -0.0
2,040,536 + MPMX20_01944 0.61 -0.2
2,040,536 + MPMX20_01944 0.61 -3.0
2,040,544 - MPMX20_01944 0.62 -0.1
2,040,544 - MPMX20_01944 0.62 -0.3
2,040,544 - MPMX20_01944 0.62 -0.2
2,040,546 + MPMX20_01944 0.62 -0.2
2,040,553 + MPMX20_01944 0.62 +0.8
2,040,561 - MPMX20_01944 0.63 -0.5
2,040,578 - MPMX20_01944 0.64 +1.0
2,040,620 + MPMX20_01944 0.67 -0.2
2,040,628 - MPMX20_01944 0.67 -1.0
2,040,628 - MPMX20_01944 0.67 +0.4
2,040,644 - MPMX20_01944 0.68 -2.0
2,040,654 + MPMX20_01944 0.69 -0.3
2,040,654 + MPMX20_01944 0.69 -0.6
2,040,654 + MPMX20_01944 0.69 -0.5
2,040,654 + MPMX20_01944 0.69 -2.7
2,040,654 + MPMX20_01944 0.69 -0.3
2,040,654 + MPMX20_01944 0.69 -1.3
2,040,654 + MPMX20_01944 0.69 -1.6
2,040,662 - MPMX20_01944 0.69 +1.0
2,040,662 - MPMX20_01944 0.69 -1.3
2,040,662 - MPMX20_01944 0.69 -2.2
2,040,662 - MPMX20_01944 0.69 -0.9
2,040,662 - MPMX20_01944 0.69 -1.3
2,040,662 - MPMX20_01944 0.69 +0.0
2,040,670 - MPMX20_01944 0.70 -0.2
2,040,729 + MPMX20_01944 0.74 -0.1
2,040,771 - MPMX20_01944 0.77 -0.4
2,040,772 + MPMX20_01944 0.77 -1.3
2,040,790 - MPMX20_01944 0.78 -2.6
2,040,793 - MPMX20_01944 0.78 -1.4
2,040,795 + MPMX20_01944 0.78 -0.8
2,040,795 + MPMX20_01944 0.78 -1.2
2,040,830 + MPMX20_01944 0.81 -1.1
2,040,838 - MPMX20_01944 0.81 -0.3
2,040,838 - MPMX20_01944 0.81 -0.6
2,040,838 - MPMX20_01944 0.81 -0.8
2,040,838 - MPMX20_01944 0.81 -0.6
2,040,874 + MPMX20_01944 0.84 -1.6
2,040,918 + MPMX20_01944 0.87 -0.7
2,040,926 - MPMX20_01944 0.87 -0.6
2,040,935 - MPMX20_01944 0.88 -3.0
2,040,963 + MPMX20_01944 0.90 +0.1
2,040,973 - -2.7
2,041,001 - -1.0
2,041,036 - +0.7
2,041,036 - -1.2
2,041,088 + -2.1
2,041,089 + +0.7
2,041,094 + -2.0
2,041,094 + +0.7
2,041,183 - -0.8
2,041,212 - MPMX20_01945 0.12 -1.4
2,041,354 + MPMX20_01945 0.31 -1.5
2,041,362 - MPMX20_01945 0.32 -1.0
2,041,394 + MPMX20_01945 0.36 -1.3
2,041,457 + MPMX20_01945 0.44 -1.6
2,041,473 - MPMX20_01945 0.46 -0.2
2,041,534 + MPMX20_01945 0.55 -1.2
2,041,534 + MPMX20_01945 0.55 -0.3
2,041,534 + MPMX20_01945 0.55 -0.6
2,041,613 + MPMX20_01945 0.65 +0.6
2,041,613 + MPMX20_01945 0.65 -0.2
2,041,613 + MPMX20_01945 0.65 -0.8
2,041,616 - MPMX20_01945 0.66 -0.2
2,041,663 + MPMX20_01945 0.72 +1.4
2,041,734 + MPMX20_01945 0.81 +0.2
2,041,757 - MPMX20_01945 0.84 +0.3
2,041,821 + +0.6
2,041,821 + -0.6
2,041,821 + +2.0
2,041,829 - +0.0
2,041,842 + +0.7
2,041,842 + -1.3
2,041,842 + +0.7
2,041,844 + +1.4
2,041,850 - +0.5
2,041,866 + -1.1
2,041,866 + -1.2
2,041,874 - +0.7
2,041,909 + +0.3
2,042,025 - MPMX20_01946 0.14 -1.3
2,042,050 + MPMX20_01946 0.16 -1.0
2,042,077 + MPMX20_01946 0.18 -1.8

Or see this region's nucleotide sequence