Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03241

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03239 and MPMX20_03240 are separated by 134 nucleotidesMPMX20_03240 and MPMX20_03241 are separated by 47 nucleotidesMPMX20_03241 and MPMX20_03242 are separated by 8 nucleotidesMPMX20_03242 and MPMX20_03243 overlap by 4 nucleotides MPMX20_03239: MPMX20_03239 - Epimerase family protein, at 3,410,246 to 3,411,139 _03239 MPMX20_03240: MPMX20_03240 - hypothetical protein, at 3,411,274 to 3,411,690 _03240 MPMX20_03241: MPMX20_03241 - Histidine transport ATP-binding protein HisP, at 3,411,738 to 3,412,511 _03241 MPMX20_03242: MPMX20_03242 - Histidine transport system permease protein HisM, at 3,412,520 to 3,413,236 _03242 MPMX20_03243: MPMX20_03243 - Histidine transport system permease protein HisQ, at 3,413,233 to 3,413,919 _03243 Position (kb) 3411 3412 3413Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3410.842 kb on - strand, within MPMX20_03239at 3410.882 kb on + strand, within MPMX20_03239at 3410.889 kb on - strand, within MPMX20_03239at 3410.920 kb on - strand, within MPMX20_03239at 3410.930 kb on - strand, within MPMX20_03239at 3410.958 kb on + strand, within MPMX20_03239at 3411.069 kb on + strandat 3411.138 kb on - strandat 3411.279 kb on + strandat 3411.279 kb on + strandat 3411.279 kb on + strandat 3411.287 kb on - strandat 3411.331 kb on + strand, within MPMX20_03240at 3411.333 kb on + strand, within MPMX20_03240at 3411.341 kb on - strand, within MPMX20_03240at 3411.443 kb on + strand, within MPMX20_03240at 3411.473 kb on - strand, within MPMX20_03240at 3411.482 kb on + strand, within MPMX20_03240at 3411.499 kb on + strand, within MPMX20_03240at 3411.535 kb on - strand, within MPMX20_03240at 3411.633 kb on + strand, within MPMX20_03240at 3411.684 kb on + strandat 3411.697 kb on - strandat 3411.818 kb on - strand, within MPMX20_03241at 3411.941 kb on - strand, within MPMX20_03241at 3411.941 kb on - strand, within MPMX20_03241at 3412.085 kb on + strand, within MPMX20_03241at 3412.107 kb on + strand, within MPMX20_03241at 3412.270 kb on + strand, within MPMX20_03241at 3412.355 kb on + strand, within MPMX20_03241at 3412.355 kb on + strand, within MPMX20_03241at 3412.355 kb on + strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.363 kb on - strand, within MPMX20_03241at 3412.370 kb on + strand, within MPMX20_03241at 3412.385 kb on - strand, within MPMX20_03241at 3412.387 kb on - strand, within MPMX20_03241at 3412.481 kb on + strandat 3412.490 kb on + strandat 3412.556 kb on + strandat 3412.591 kb on - strandat 3412.591 kb on - strandat 3412.650 kb on - strand, within MPMX20_03242at 3412.693 kb on - strand, within MPMX20_03242at 3412.706 kb on + strand, within MPMX20_03242at 3412.709 kb on - strand, within MPMX20_03242at 3412.714 kb on - strand, within MPMX20_03242at 3412.714 kb on - strand, within MPMX20_03242at 3412.724 kb on - strand, within MPMX20_03242at 3412.802 kb on - strand, within MPMX20_03242at 3412.855 kb on - strand, within MPMX20_03242at 3412.918 kb on + strand, within MPMX20_03242at 3412.918 kb on + strand, within MPMX20_03242at 3412.928 kb on + strand, within MPMX20_03242at 3412.928 kb on + strand, within MPMX20_03242at 3412.928 kb on + strand, within MPMX20_03242at 3412.928 kb on + strand, within MPMX20_03242at 3412.931 kb on - strand, within MPMX20_03242at 3412.936 kb on - strand, within MPMX20_03242at 3412.936 kb on - strand, within MPMX20_03242at 3412.936 kb on - strand, within MPMX20_03242at 3413.001 kb on - strand, within MPMX20_03242at 3413.001 kb on - strand, within MPMX20_03242at 3413.042 kb on + strand, within MPMX20_03242at 3413.193 kb on + strandat 3413.193 kb on + strandat 3413.196 kb on - strandat 3413.244 kb on - strandat 3413.248 kb on + strandat 3413.248 kb on + strandat 3413.248 kb on + strandat 3413.248 kb on + strandat 3413.251 kb on - strandat 3413.256 kb on - strandat 3413.278 kb on - strandat 3413.337 kb on + strand, within MPMX20_03243at 3413.345 kb on - strand, within MPMX20_03243at 3413.352 kb on + strand, within MPMX20_03243at 3413.352 kb on + strand, within MPMX20_03243at 3413.397 kb on + strand, within MPMX20_03243at 3413.457 kb on - strand, within MPMX20_03243at 3413.477 kb on - strand, within MPMX20_03243at 3413.511 kb on + strand, within MPMX20_03243at 3413.511 kb on + strand, within MPMX20_03243

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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3,410,842 - MPMX20_03239 0.67 -0.2
3,410,882 + MPMX20_03239 0.71 -1.1
3,410,889 - MPMX20_03239 0.72 +0.8
3,410,920 - MPMX20_03239 0.75 -0.6
3,410,930 - MPMX20_03239 0.77 +3.3
3,410,958 + MPMX20_03239 0.80 -2.3
3,411,069 + -2.1
3,411,138 - +0.1
3,411,279 + -0.7
3,411,279 + +0.0
3,411,279 + -0.4
3,411,287 - +0.5
3,411,331 + MPMX20_03240 0.14 +1.3
3,411,333 + MPMX20_03240 0.14 -0.8
3,411,341 - MPMX20_03240 0.16 +0.5
3,411,443 + MPMX20_03240 0.41 -1.5
3,411,473 - MPMX20_03240 0.48 -0.2
3,411,482 + MPMX20_03240 0.50 -0.7
3,411,499 + MPMX20_03240 0.54 -0.8
3,411,535 - MPMX20_03240 0.63 -2.3
3,411,633 + MPMX20_03240 0.86 -0.0
3,411,684 + -1.0
3,411,697 - +1.9
3,411,818 - MPMX20_03241 0.10 +0.1
3,411,941 - MPMX20_03241 0.26 -0.1
3,411,941 - MPMX20_03241 0.26 +1.0
3,412,085 + MPMX20_03241 0.45 +1.4
3,412,107 + MPMX20_03241 0.48 +1.3
3,412,270 + MPMX20_03241 0.69 +0.4
3,412,355 + MPMX20_03241 0.80 +0.7
3,412,355 + MPMX20_03241 0.80 -0.2
3,412,355 + MPMX20_03241 0.80 +0.7
3,412,363 - MPMX20_03241 0.81 -0.7
3,412,363 - MPMX20_03241 0.81 -1.0
3,412,363 - MPMX20_03241 0.81 -1.1
3,412,363 - MPMX20_03241 0.81 +0.7
3,412,363 - MPMX20_03241 0.81 -0.6
3,412,363 - MPMX20_03241 0.81 +1.4
3,412,363 - MPMX20_03241 0.81 +1.0
3,412,370 + MPMX20_03241 0.82 -0.0
3,412,385 - MPMX20_03241 0.84 +0.9
3,412,387 - MPMX20_03241 0.84 +0.1
3,412,481 + +1.8
3,412,490 + +0.5
3,412,556 + -2.1
3,412,591 - -1.5
3,412,591 - +2.3
3,412,650 - MPMX20_03242 0.18 +0.6
3,412,693 - MPMX20_03242 0.24 -0.8
3,412,706 + MPMX20_03242 0.26 -0.7
3,412,709 - MPMX20_03242 0.26 -0.6
3,412,714 - MPMX20_03242 0.27 +2.3
3,412,714 - MPMX20_03242 0.27 +0.1
3,412,724 - MPMX20_03242 0.28 +0.6
3,412,802 - MPMX20_03242 0.39 +0.2
3,412,855 - MPMX20_03242 0.47 -0.7
3,412,918 + MPMX20_03242 0.56 +0.3
3,412,918 + MPMX20_03242 0.56 +0.8
3,412,928 + MPMX20_03242 0.57 +0.6
3,412,928 + MPMX20_03242 0.57 +0.2
3,412,928 + MPMX20_03242 0.57 -0.1
3,412,928 + MPMX20_03242 0.57 -1.3
3,412,931 - MPMX20_03242 0.57 +0.4
3,412,936 - MPMX20_03242 0.58 -0.1
3,412,936 - MPMX20_03242 0.58 -0.0
3,412,936 - MPMX20_03242 0.58 +0.4
3,413,001 - MPMX20_03242 0.67 +0.6
3,413,001 - MPMX20_03242 0.67 +1.3
3,413,042 + MPMX20_03242 0.73 -2.4
3,413,193 + +1.0
3,413,193 + +0.7
3,413,196 - +0.1
3,413,244 - +2.0
3,413,248 + +1.3
3,413,248 + +0.3
3,413,248 + -1.0
3,413,248 + -2.1
3,413,251 - -0.2
3,413,256 - +1.6
3,413,278 - -0.3
3,413,337 + MPMX20_03243 0.15 +1.0
3,413,345 - MPMX20_03243 0.16 +1.3
3,413,352 + MPMX20_03243 0.17 +0.4
3,413,352 + MPMX20_03243 0.17 -0.5
3,413,397 + MPMX20_03243 0.24 +1.2
3,413,457 - MPMX20_03243 0.33 -0.6
3,413,477 - MPMX20_03243 0.36 +0.3
3,413,511 + MPMX20_03243 0.40 +0.6
3,413,511 + MPMX20_03243 0.40 +0.1

Or see this region's nucleotide sequence