Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03030 and HMPREF1058_RS21685 overlap by 29 nucleotides
HMPREF1058_RS03030: HMPREF1058_RS03030 - hypothetical protein, at 27,795 to 29,303
_RS03030
HMPREF1058_RS21685: HMPREF1058_RS21685 - hypothetical protein, at 29,275 to 29,427
_RS21685
Position (kb) 29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 28.405 kb on - strand, within HMPREF1058_RS03030 at 28.425 kb on + strand, within HMPREF1058_RS03030 at 28.431 kb on + strand, within HMPREF1058_RS03030 at 28.589 kb on - strand, within HMPREF1058_RS03030 at 28.677 kb on - strand, within HMPREF1058_RS03030 at 28.722 kb on + strand, within HMPREF1058_RS03030 at 28.727 kb on + strand, within HMPREF1058_RS03030 at 28.780 kb on - strand, within HMPREF1058_RS03030 at 28.793 kb on + strand, within HMPREF1058_RS03030 at 28.929 kb on + strand, within HMPREF1058_RS03030 at 28.930 kb on - strand, within HMPREF1058_RS03030 at 29.021 kb on + strand, within HMPREF1058_RS03030 at 29.050 kb on + strand, within HMPREF1058_RS03030 at 29.073 kb on - strand, within HMPREF1058_RS03030 at 29.080 kb on + strand, within HMPREF1058_RS03030 at 29.080 kb on + strand, within HMPREF1058_RS03030 at 29.080 kb on + strand, within HMPREF1058_RS03030 at 29.081 kb on - strand, within HMPREF1058_RS03030 at 29.128 kb on - strand, within HMPREF1058_RS03030 at 29.197 kb on + strand at 29.198 kb on - strand at 29.198 kb on - strand at 29.406 kb on - strand, within HMPREF1058_RS21685 at 29.451 kb on - strand at 29.455 kb on - strand at 29.519 kb on + strand at 29.520 kb on - strand at 29.520 kb on - strand at 29.560 kb on + strand at 29.561 kb on - strand at 29.587 kb on - strand at 29.587 kb on - strand at 29.604 kb on + strand at 29.605 kb on - strand at 29.627 kb on - strand at 29.697 kb on + strand at 29.856 kb on - strand at 29.938 kb on + strand at 29.945 kb on + strand at 29.946 kb on - strand at 30.010 kb on - strand at 30.054 kb on + strand at 30.087 kb on - strand at 30.087 kb on - strand at 30.090 kb on + strand at 30.179 kb on + strand at 30.180 kb on - strand at 30.363 kb on + strand at 30.363 kb on + strand at 30.375 kb on + strand at 30.387 kb on + strand at 30.400 kb on + strand at 30.400 kb on + strand at 30.400 kb on + strand at 30.400 kb on + strand at 30.401 kb on - strand at 30.402 kb on + strand at 30.402 kb on + strand at 30.402 kb on + strand at 30.402 kb on + strand at 30.403 kb on - strand at 30.403 kb on - strand at 30.403 kb on - strand at 30.404 kb on + strand at 30.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 28,405 - HMPREF1058_RS03030 0.40 +3.2 28,425 + HMPREF1058_RS03030 0.42 +1.1 28,431 + HMPREF1058_RS03030 0.42 +2.4 28,589 - HMPREF1058_RS03030 0.53 -1.6 28,677 - HMPREF1058_RS03030 0.58 -0.4 28,722 + HMPREF1058_RS03030 0.61 +0.1 28,727 + HMPREF1058_RS03030 0.62 +0.6 28,780 - HMPREF1058_RS03030 0.65 -1.5 28,793 + HMPREF1058_RS03030 0.66 +0.0 28,929 + HMPREF1058_RS03030 0.75 -1.2 28,930 - HMPREF1058_RS03030 0.75 +0.6 29,021 + HMPREF1058_RS03030 0.81 +0.6 29,050 + HMPREF1058_RS03030 0.83 -1.8 29,073 - HMPREF1058_RS03030 0.85 +0.5 29,080 + HMPREF1058_RS03030 0.85 +0.3 29,080 + HMPREF1058_RS03030 0.85 -0.4 29,080 + HMPREF1058_RS03030 0.85 -0.3 29,081 - HMPREF1058_RS03030 0.85 -1.6 29,128 - HMPREF1058_RS03030 0.88 +0.6 29,197 + +0.1 29,198 - -0.7 29,198 - -1.6 29,406 - HMPREF1058_RS21685 0.86 -0.4 29,451 - -0.5 29,455 - -1.2 29,519 + +0.2 29,520 - +1.3 29,520 - +0.3 29,560 + +0.4 29,561 - -0.1 29,587 - +0.2 29,587 - -0.3 29,604 + -1.3 29,605 - -3.0 29,627 - -0.7 29,697 + -1.4 29,856 - -0.1 29,938 + -1.0 29,945 + +1.3 29,946 - +0.6 30,010 - +0.8 30,054 + +0.6 30,087 - +0.2 30,087 - -1.2 30,090 + +1.6 30,179 + +0.9 30,180 - -0.4 30,363 + +0.9 30,363 + -0.3 30,375 + +0.8 30,387 + -1.2 30,400 + -0.7 30,400 + +1.9 30,400 + +0.9 30,400 + +0.2 30,401 - -0.8 30,402 + +0.1 30,402 + -1.0 30,402 + -0.6 30,402 + +1.9 30,403 - -0.5 30,403 - -0.0 30,403 - -2.3 30,404 + -0.4 30,426 + -0.7
Or see this region's nucleotide sequence