Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09945 and HMPREF1058_RS09940 are separated by 93 nucleotides HMPREF1058_RS09940 and HMPREF1058_RS09935 overlap by 4 nucleotides HMPREF1058_RS09935 and HMPREF1058_RS09930 are separated by 18 nucleotides
HMPREF1058_RS09945: HMPREF1058_RS09945 - hypothetical protein, at 756,178 to 757,161
_RS09945
HMPREF1058_RS09940: HMPREF1058_RS09940 - lysozyme, at 757,255 to 757,782
_RS09940
HMPREF1058_RS09935: HMPREF1058_RS09935 - DUF3872 domain-containing protein, at 757,779 to 758,285
_RS09935
HMPREF1058_RS09930: HMPREF1058_RS09930 - toprim domain-containing protein, at 758,304 to 759,179
_RS09930
Position (kb) 757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 756.257 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.268 kb on - strand at 756.268 kb on - strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.334 kb on + strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.352 kb on + strand, within HMPREF1058_RS09945 at 756.353 kb on - strand, within HMPREF1058_RS09945 at 756.356 kb on + strand, within HMPREF1058_RS09945 at 756.357 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.485 kb on - strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.506 kb on + strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.550 kb on - strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.585 kb on + strand, within HMPREF1058_RS09945 at 756.623 kb on - strand, within HMPREF1058_RS09945 at 756.627 kb on - strand, within HMPREF1058_RS09945 at 756.650 kb on + strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.674 kb on + strand, within HMPREF1058_RS09945 at 756.676 kb on + strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.721 kb on - strand, within HMPREF1058_RS09945 at 756.753 kb on + strand, within HMPREF1058_RS09945 at 756.804 kb on - strand, within HMPREF1058_RS09945 at 756.808 kb on + strand, within HMPREF1058_RS09945 at 756.809 kb on - strand, within HMPREF1058_RS09945 at 756.870 kb on + strand, within HMPREF1058_RS09945 at 756.897 kb on + strand, within HMPREF1058_RS09945 at 756.911 kb on - strand, within HMPREF1058_RS09945 at 757.000 kb on - strand, within HMPREF1058_RS09945 at 757.023 kb on + strand, within HMPREF1058_RS09945 at 757.048 kb on - strand, within HMPREF1058_RS09945 at 757.137 kb on - strand at 757.203 kb on + strand at 757.265 kb on + strand at 757.266 kb on - strand at 757.325 kb on + strand, within HMPREF1058_RS09940 at 757.325 kb on + strand, within HMPREF1058_RS09940 at 757.344 kb on - strand, within HMPREF1058_RS09940 at 757.344 kb on - strand, within HMPREF1058_RS09940 at 757.824 kb on - strand at 757.939 kb on + strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.942 kb on + strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 758.051 kb on + strand, within HMPREF1058_RS09935 at 758.051 kb on + strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.053 kb on + strand, within HMPREF1058_RS09935 at 758.055 kb on + strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.278 kb on - strand at 758.305 kb on + strand at 758.457 kb on + strand, within HMPREF1058_RS09930 at 758.609 kb on + strand, within HMPREF1058_RS09930
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 756,257 + -1.7 756,267 + +0.3 756,267 + -0.4 756,267 + +2.7 756,268 - +0.1 756,268 - +1.4 756,269 + -0.5 756,269 + -0.9 756,334 + HMPREF1058_RS09945 0.16 -1.0 756,335 - HMPREF1058_RS09945 0.16 +0.3 756,335 - HMPREF1058_RS09945 0.16 -0.7 756,352 + HMPREF1058_RS09945 0.18 -3.0 756,353 - HMPREF1058_RS09945 0.18 -1.2 756,356 + HMPREF1058_RS09945 0.18 +1.1 756,357 - HMPREF1058_RS09945 0.18 -1.4 756,482 - HMPREF1058_RS09945 0.31 +0.5 756,482 - HMPREF1058_RS09945 0.31 -1.5 756,485 - HMPREF1058_RS09945 0.31 +1.2 756,504 + HMPREF1058_RS09945 0.33 +0.2 756,504 + HMPREF1058_RS09945 0.33 +0.3 756,504 + HMPREF1058_RS09945 0.33 -0.3 756,504 + HMPREF1058_RS09945 0.33 +0.4 756,504 + HMPREF1058_RS09945 0.33 -0.6 756,505 - HMPREF1058_RS09945 0.33 -1.4 756,505 - HMPREF1058_RS09945 0.33 +0.4 756,506 + HMPREF1058_RS09945 0.33 +1.5 756,507 - HMPREF1058_RS09945 0.33 -0.3 756,507 - HMPREF1058_RS09945 0.33 -1.1 756,507 - HMPREF1058_RS09945 0.33 +1.0 756,550 - HMPREF1058_RS09945 0.38 +0.2 756,583 + HMPREF1058_RS09945 0.41 -1.6 756,583 + HMPREF1058_RS09945 0.41 +0.4 756,584 - HMPREF1058_RS09945 0.41 -0.3 756,584 - HMPREF1058_RS09945 0.41 -1.1 756,584 - HMPREF1058_RS09945 0.41 -1.3 756,584 - HMPREF1058_RS09945 0.41 -0.8 756,585 + HMPREF1058_RS09945 0.41 +0.7 756,623 - HMPREF1058_RS09945 0.45 -1.2 756,627 - HMPREF1058_RS09945 0.46 +0.1 756,650 + HMPREF1058_RS09945 0.48 -0.1 756,651 - HMPREF1058_RS09945 0.48 -0.8 756,651 - HMPREF1058_RS09945 0.48 -0.1 756,651 - HMPREF1058_RS09945 0.48 +2.2 756,652 + HMPREF1058_RS09945 0.48 +0.1 756,652 + HMPREF1058_RS09945 0.48 +0.3 756,655 - HMPREF1058_RS09945 0.48 -1.9 756,655 - HMPREF1058_RS09945 0.48 -0.8 756,674 + HMPREF1058_RS09945 0.50 -0.3 756,676 + HMPREF1058_RS09945 0.51 +1.2 756,677 - HMPREF1058_RS09945 0.51 -1.0 756,677 - HMPREF1058_RS09945 0.51 -0.9 756,677 - HMPREF1058_RS09945 0.51 -1.3 756,677 - HMPREF1058_RS09945 0.51 -0.8 756,721 - HMPREF1058_RS09945 0.55 -0.8 756,753 + HMPREF1058_RS09945 0.58 -1.2 756,804 - HMPREF1058_RS09945 0.64 +1.5 756,808 + HMPREF1058_RS09945 0.64 -0.2 756,809 - HMPREF1058_RS09945 0.64 -0.7 756,870 + HMPREF1058_RS09945 0.70 -0.8 756,897 + HMPREF1058_RS09945 0.73 -0.4 756,911 - HMPREF1058_RS09945 0.74 -0.6 757,000 - HMPREF1058_RS09945 0.84 -1.9 757,023 + HMPREF1058_RS09945 0.86 +0.5 757,048 - HMPREF1058_RS09945 0.88 -0.8 757,137 - -0.8 757,203 + -0.2 757,265 + +0.4 757,266 - +1.7 757,325 + HMPREF1058_RS09940 0.13 +1.7 757,325 + HMPREF1058_RS09940 0.13 -0.4 757,344 - HMPREF1058_RS09940 0.17 +0.2 757,344 - HMPREF1058_RS09940 0.17 -1.4 757,824 - -1.6 757,939 + HMPREF1058_RS09935 0.32 -0.2 757,940 - HMPREF1058_RS09935 0.32 -0.1 757,940 - HMPREF1058_RS09935 0.32 +2.6 757,940 - HMPREF1058_RS09935 0.32 +0.3 757,942 + HMPREF1058_RS09935 0.32 -0.9 757,943 - HMPREF1058_RS09935 0.32 -0.8 757,943 - HMPREF1058_RS09935 0.32 -0.6 757,943 - HMPREF1058_RS09935 0.32 +0.2 758,051 + HMPREF1058_RS09935 0.54 +0.9 758,051 + HMPREF1058_RS09935 0.54 +0.2 758,052 - HMPREF1058_RS09935 0.54 -0.1 758,052 - HMPREF1058_RS09935 0.54 -0.4 758,052 - HMPREF1058_RS09935 0.54 -0.7 758,052 - HMPREF1058_RS09935 0.54 -1.7 758,052 - HMPREF1058_RS09935 0.54 -0.8 758,053 + HMPREF1058_RS09935 0.54 -0.2 758,055 + HMPREF1058_RS09935 0.54 +0.8 758,056 - HMPREF1058_RS09935 0.55 +0.2 758,056 - HMPREF1058_RS09935 0.55 +0.2 758,056 - HMPREF1058_RS09935 0.55 +1.3 758,278 - +1.8 758,305 + -0.3 758,457 + HMPREF1058_RS09930 0.17 -1.3 758,609 + HMPREF1058_RS09930 0.35 +1.2
Or see this region's nucleotide sequence