Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20600

Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12650 and HMPREF1058_RS20600 overlap by 60 nucleotidesHMPREF1058_RS20600 and HMPREF1058_RS12645 are separated by 3 nucleotides HMPREF1058_RS12650: HMPREF1058_RS12650 - helix-turn-helix transcriptional regulator, at 63,606 to 64,370 _RS12650 HMPREF1058_RS20600: HMPREF1058_RS20600 - hypothetical protein, at 64,311 to 64,661 _RS20600 HMPREF1058_RS12645: HMPREF1058_RS12645 - outer membrane beta-barrel protein, at 64,665 to 66,971 _RS12645 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.403 kb on + strandat 63.411 kb on - strandat 63.417 kb on - strandat 63.429 kb on + strandat 63.529 kb on - strandat 63.606 kb on - strandat 63.642 kb on - strandat 63.647 kb on + strandat 63.648 kb on - strandat 63.655 kb on + strandat 63.691 kb on + strand, within HMPREF1058_RS12650at 63.692 kb on - strand, within HMPREF1058_RS12650at 63.692 kb on - strand, within HMPREF1058_RS12650at 63.692 kb on - strand, within HMPREF1058_RS12650at 63.695 kb on + strand, within HMPREF1058_RS12650at 63.695 kb on + strand, within HMPREF1058_RS12650at 63.696 kb on - strand, within HMPREF1058_RS12650at 63.734 kb on + strand, within HMPREF1058_RS12650at 63.739 kb on + strand, within HMPREF1058_RS12650at 63.739 kb on + strand, within HMPREF1058_RS12650at 63.739 kb on + strand, within HMPREF1058_RS12650at 63.739 kb on + strand, within HMPREF1058_RS12650at 63.740 kb on - strand, within HMPREF1058_RS12650at 63.740 kb on - strand, within HMPREF1058_RS12650at 63.740 kb on - strand, within HMPREF1058_RS12650at 63.741 kb on + strand, within HMPREF1058_RS12650at 63.741 kb on + strand, within HMPREF1058_RS12650at 63.748 kb on + strand, within HMPREF1058_RS12650at 63.884 kb on + strand, within HMPREF1058_RS12650at 63.918 kb on + strand, within HMPREF1058_RS12650at 63.918 kb on + strandat 63.963 kb on - strand, within HMPREF1058_RS12650at 63.963 kb on - strand, within HMPREF1058_RS12650at 64.016 kb on - strand, within HMPREF1058_RS12650at 64.046 kb on + strand, within HMPREF1058_RS12650at 64.048 kb on + strand, within HMPREF1058_RS12650at 64.060 kb on + strand, within HMPREF1058_RS12650at 64.064 kb on + strand, within HMPREF1058_RS12650at 64.064 kb on + strand, within HMPREF1058_RS12650at 64.065 kb on - strand, within HMPREF1058_RS12650at 64.065 kb on - strand, within HMPREF1058_RS12650at 64.065 kb on - strand, within HMPREF1058_RS12650at 64.103 kb on - strand, within HMPREF1058_RS12650at 64.118 kb on + strand, within HMPREF1058_RS12650at 64.119 kb on - strand, within HMPREF1058_RS12650at 64.134 kb on + strand, within HMPREF1058_RS12650at 64.134 kb on + strand, within HMPREF1058_RS12650at 64.135 kb on - strand, within HMPREF1058_RS12650at 64.135 kb on - strand, within HMPREF1058_RS12650at 64.137 kb on - strand, within HMPREF1058_RS12650at 64.180 kb on + strand, within HMPREF1058_RS12650at 64.312 kb on + strandat 64.313 kb on - strandat 64.368 kb on + strandat 64.401 kb on + strand, within HMPREF1058_RS20600at 64.403 kb on + strand, within HMPREF1058_RS20600at 64.423 kb on + strand, within HMPREF1058_RS20600at 64.423 kb on + strand, within HMPREF1058_RS20600at 64.470 kb on - strand, within HMPREF1058_RS20600at 64.505 kb on + strand, within HMPREF1058_RS20600at 64.530 kb on + strand, within HMPREF1058_RS20600at 64.531 kb on - strand, within HMPREF1058_RS20600at 64.531 kb on - strand, within HMPREF1058_RS20600at 64.638 kb on + strandat 64.639 kb on - strandat 64.639 kb on - strandat 64.666 kb on + strandat 64.667 kb on - strandat 64.667 kb on - strandat 64.671 kb on - strandat 64.708 kb on + strandat 64.708 kb on + strandat 64.728 kb on - strandat 64.804 kb on + strandat 64.828 kb on - strandat 64.831 kb on - strandat 64.890 kb on + strandat 64.907 kb on + strand, within HMPREF1058_RS12645at 64.908 kb on - strand, within HMPREF1058_RS12645at 64.908 kb on - strand, within HMPREF1058_RS12645at 64.958 kb on - strand, within HMPREF1058_RS12645at 64.962 kb on - strand, within HMPREF1058_RS12645at 65.177 kb on - strand, within HMPREF1058_RS12645at 65.181 kb on + strand, within HMPREF1058_RS12645at 65.182 kb on - strand, within HMPREF1058_RS12645at 65.234 kb on - strand, within HMPREF1058_RS12645at 65.257 kb on - strandat 65.281 kb on - strand, within HMPREF1058_RS12645at 65.297 kb on + strand, within HMPREF1058_RS12645at 65.297 kb on + strand, within HMPREF1058_RS12645at 65.298 kb on - strand, within HMPREF1058_RS12645at 65.345 kb on + strand, within HMPREF1058_RS12645at 65.345 kb on + strand, within HMPREF1058_RS12645at 65.345 kb on + strand, within HMPREF1058_RS12645at 65.346 kb on - strand, within HMPREF1058_RS12645at 65.351 kb on + strand, within HMPREF1058_RS12645at 65.351 kb on + strand, within HMPREF1058_RS12645at 65.359 kb on + strand, within HMPREF1058_RS12645at 65.359 kb on - strand, within HMPREF1058_RS12645at 65.459 kb on + strand, within HMPREF1058_RS12645at 65.460 kb on - strand, within HMPREF1058_RS12645at 65.471 kb on + strand, within HMPREF1058_RS12645at 65.471 kb on + strand, within HMPREF1058_RS12645at 65.480 kb on - strand, within HMPREF1058_RS12645at 65.480 kb on - strand, within HMPREF1058_RS12645at 65.481 kb on + strand, within HMPREF1058_RS12645at 65.597 kb on - strand, within HMPREF1058_RS12645at 65.640 kb on + strand, within HMPREF1058_RS12645at 65.641 kb on - strand, within HMPREF1058_RS12645at 65.641 kb on - strand, within HMPREF1058_RS12645at 65.641 kb on - strand, within HMPREF1058_RS12645at 65.659 kb on - strand, within HMPREF1058_RS12645

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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63,403 + +0.2
63,411 - +1.3
63,417 - -1.3
63,429 + +0.3
63,529 - -0.0
63,606 - -0.2
63,642 - -0.3
63,647 + +1.2
63,648 - +0.7
63,655 + -1.2
63,691 + HMPREF1058_RS12650 0.11 +0.1
63,692 - HMPREF1058_RS12650 0.11 -0.4
63,692 - HMPREF1058_RS12650 0.11 -0.4
63,692 - HMPREF1058_RS12650 0.11 -0.9
63,695 + HMPREF1058_RS12650 0.12 +0.5
63,695 + HMPREF1058_RS12650 0.12 -1.1
63,696 - HMPREF1058_RS12650 0.12 +1.5
63,734 + HMPREF1058_RS12650 0.17 -2.6
63,739 + HMPREF1058_RS12650 0.17 -0.1
63,739 + HMPREF1058_RS12650 0.17 -0.3
63,739 + HMPREF1058_RS12650 0.17 +0.1
63,739 + HMPREF1058_RS12650 0.17 -0.8
63,740 - HMPREF1058_RS12650 0.18 +0.1
63,740 - HMPREF1058_RS12650 0.18 +2.0
63,740 - HMPREF1058_RS12650 0.18 -0.5
63,741 + HMPREF1058_RS12650 0.18 -2.4
63,741 + HMPREF1058_RS12650 0.18 -2.0
63,748 + HMPREF1058_RS12650 0.19 +0.4
63,884 + HMPREF1058_RS12650 0.36 -0.5
63,918 + HMPREF1058_RS12650 0.41 -1.4
63,918 + +0.2
63,963 - HMPREF1058_RS12650 0.47 +0.7
63,963 - HMPREF1058_RS12650 0.47 -0.8
64,016 - HMPREF1058_RS12650 0.54 -1.3
64,046 + HMPREF1058_RS12650 0.58 -0.4
64,048 + HMPREF1058_RS12650 0.58 -0.4
64,060 + HMPREF1058_RS12650 0.59 -0.1
64,064 + HMPREF1058_RS12650 0.60 -0.5
64,064 + HMPREF1058_RS12650 0.60 +0.0
64,065 - HMPREF1058_RS12650 0.60 -0.8
64,065 - HMPREF1058_RS12650 0.60 +0.4
64,065 - HMPREF1058_RS12650 0.60 -0.3
64,103 - HMPREF1058_RS12650 0.65 +1.3
64,118 + HMPREF1058_RS12650 0.67 -2.2
64,119 - HMPREF1058_RS12650 0.67 +0.1
64,134 + HMPREF1058_RS12650 0.69 -0.8
64,134 + HMPREF1058_RS12650 0.69 +1.6
64,135 - HMPREF1058_RS12650 0.69 -0.0
64,135 - HMPREF1058_RS12650 0.69 -1.4
64,137 - HMPREF1058_RS12650 0.69 +1.7
64,180 + HMPREF1058_RS12650 0.75 +0.0
64,312 + +0.8
64,313 - +0.1
64,368 + +0.2
64,401 + HMPREF1058_RS20600 0.26 +1.5
64,403 + HMPREF1058_RS20600 0.26 +2.1
64,423 + HMPREF1058_RS20600 0.32 +0.3
64,423 + HMPREF1058_RS20600 0.32 +1.8
64,470 - HMPREF1058_RS20600 0.45 +1.1
64,505 + HMPREF1058_RS20600 0.55 +0.6
64,530 + HMPREF1058_RS20600 0.62 +2.2
64,531 - HMPREF1058_RS20600 0.63 +2.8
64,531 - HMPREF1058_RS20600 0.63 +0.6
64,638 + +0.5
64,639 - +1.0
64,639 - -0.1
64,666 + -0.4
64,667 - -0.2
64,667 - -0.9
64,671 - +2.0
64,708 + -0.3
64,708 + -0.9
64,728 - -0.1
64,804 + -0.7
64,828 - -0.1
64,831 - +1.8
64,890 + +0.6
64,907 + HMPREF1058_RS12645 0.10 +1.1
64,908 - HMPREF1058_RS12645 0.11 -1.2
64,908 - HMPREF1058_RS12645 0.11 +1.2
64,958 - HMPREF1058_RS12645 0.13 +0.3
64,962 - HMPREF1058_RS12645 0.13 +1.1
65,177 - HMPREF1058_RS12645 0.22 -1.5
65,181 + HMPREF1058_RS12645 0.22 -0.4
65,182 - HMPREF1058_RS12645 0.22 -0.3
65,234 - HMPREF1058_RS12645 0.25 +1.2
65,257 - -0.8
65,281 - HMPREF1058_RS12645 0.27 +0.3
65,297 + HMPREF1058_RS12645 0.27 -0.9
65,297 + HMPREF1058_RS12645 0.27 +0.8
65,298 - HMPREF1058_RS12645 0.27 -0.9
65,345 + HMPREF1058_RS12645 0.29 +0.0
65,345 + HMPREF1058_RS12645 0.29 -0.1
65,345 + HMPREF1058_RS12645 0.29 +0.2
65,346 - HMPREF1058_RS12645 0.30 -0.2
65,351 + HMPREF1058_RS12645 0.30 +0.6
65,351 + HMPREF1058_RS12645 0.30 -1.4
65,359 + HMPREF1058_RS12645 0.30 +0.2
65,359 - HMPREF1058_RS12645 0.30 +0.1
65,459 + HMPREF1058_RS12645 0.34 +2.2
65,460 - HMPREF1058_RS12645 0.34 +1.0
65,471 + HMPREF1058_RS12645 0.35 +0.7
65,471 + HMPREF1058_RS12645 0.35 +0.3
65,480 - HMPREF1058_RS12645 0.35 +0.6
65,480 - HMPREF1058_RS12645 0.35 +0.0
65,481 + HMPREF1058_RS12645 0.35 +0.6
65,597 - HMPREF1058_RS12645 0.40 -0.4
65,640 + HMPREF1058_RS12645 0.42 +0.2
65,641 - HMPREF1058_RS12645 0.42 +0.1
65,641 - HMPREF1058_RS12645 0.42 -0.7
65,641 - HMPREF1058_RS12645 0.42 -1.4
65,659 - HMPREF1058_RS12645 0.43 -0.7

Or see this region's nucleotide sequence