Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17710

Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17715 and HMPREF1058_RS17710 are separated by 11 nucleotidesHMPREF1058_RS17710 and HMPREF1058_RS17705 are separated by 46 nucleotides HMPREF1058_RS17715: HMPREF1058_RS17715 - bifunctional metallophosphatase/5'-nucleotidase, at 361,184 to 362,926 _RS17715 HMPREF1058_RS17710: HMPREF1058_RS17710 - HAMP domain-containing histidine kinase, at 362,938 to 364,941 _RS17710 HMPREF1058_RS17705: HMPREF1058_RS17705 - J domain-containing protein, at 364,988 to 365,959 _RS17705 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 361.944 kb on - strand, within HMPREF1058_RS17715at 361.953 kb on + strand, within HMPREF1058_RS17715at 362.162 kb on - strand, within HMPREF1058_RS17715at 362.218 kb on + strand, within HMPREF1058_RS17715at 362.312 kb on - strand, within HMPREF1058_RS17715at 362.411 kb on - strand, within HMPREF1058_RS17715at 362.493 kb on - strand, within HMPREF1058_RS17715at 362.493 kb on - strand, within HMPREF1058_RS17715at 362.493 kb on - strand, within HMPREF1058_RS17715at 362.562 kb on - strand, within HMPREF1058_RS17715at 362.602 kb on - strand, within HMPREF1058_RS17715at 362.651 kb on - strand, within HMPREF1058_RS17715at 362.653 kb on - strand, within HMPREF1058_RS17715at 362.655 kb on + strand, within HMPREF1058_RS17715at 362.655 kb on + strand, within HMPREF1058_RS17715at 362.655 kb on + strand, within HMPREF1058_RS17715at 362.659 kb on - strand, within HMPREF1058_RS17715at 362.789 kb on - strandat 362.833 kb on + strandat 362.909 kb on - strandat 362.912 kb on + strandat 362.913 kb on - strandat 362.918 kb on - strandat 363.007 kb on + strandat 363.008 kb on - strandat 363.008 kb on - strandat 363.008 kb on - strandat 363.103 kb on + strandat 363.373 kb on + strand, within HMPREF1058_RS17710at 363.482 kb on - strand, within HMPREF1058_RS17710at 363.492 kb on - strand, within HMPREF1058_RS17710at 363.585 kb on + strand, within HMPREF1058_RS17710at 363.586 kb on - strand, within HMPREF1058_RS17710at 363.586 kb on - strand, within HMPREF1058_RS17710at 363.699 kb on + strand, within HMPREF1058_RS17710at 363.699 kb on + strand, within HMPREF1058_RS17710at 363.699 kb on + strand, within HMPREF1058_RS17710at 363.699 kb on + strand, within HMPREF1058_RS17710at 363.699 kb on + strand, within HMPREF1058_RS17710at 363.701 kb on + strand, within HMPREF1058_RS17710at 363.702 kb on - strand, within HMPREF1058_RS17710at 363.702 kb on - strand, within HMPREF1058_RS17710at 363.704 kb on + strand, within HMPREF1058_RS17710at 363.704 kb on + strand, within HMPREF1058_RS17710at 363.704 kb on + strand, within HMPREF1058_RS17710at 363.705 kb on - strand, within HMPREF1058_RS17710at 363.705 kb on - strand, within HMPREF1058_RS17710at 363.706 kb on + strand, within HMPREF1058_RS17710at 363.706 kb on + strand, within HMPREF1058_RS17710at 363.707 kb on - strand, within HMPREF1058_RS17710at 363.758 kb on - strand, within HMPREF1058_RS17710at 363.768 kb on - strand, within HMPREF1058_RS17710at 363.771 kb on + strand, within HMPREF1058_RS17710at 363.772 kb on - strand, within HMPREF1058_RS17710at 363.774 kb on - strand, within HMPREF1058_RS17710at 363.774 kb on - strand, within HMPREF1058_RS17710at 363.982 kb on - strand, within HMPREF1058_RS17710at 364.023 kb on + strand, within HMPREF1058_RS17710at 364.024 kb on - strand, within HMPREF1058_RS17710at 364.062 kb on + strand, within HMPREF1058_RS17710at 364.065 kb on - strand, within HMPREF1058_RS17710at 364.065 kb on - strand, within HMPREF1058_RS17710at 364.065 kb on - strand, within HMPREF1058_RS17710at 364.085 kb on + strand, within HMPREF1058_RS17710at 364.085 kb on + strand, within HMPREF1058_RS17710at 364.256 kb on - strand, within HMPREF1058_RS17710at 364.270 kb on - strand, within HMPREF1058_RS17710at 364.270 kb on - strand, within HMPREF1058_RS17710at 364.281 kb on + strand, within HMPREF1058_RS17710at 364.346 kb on + strand, within HMPREF1058_RS17710at 364.353 kb on - strand, within HMPREF1058_RS17710at 364.354 kb on + strand, within HMPREF1058_RS17710at 364.354 kb on + strand, within HMPREF1058_RS17710at 364.355 kb on - strand, within HMPREF1058_RS17710at 364.371 kb on + strand, within HMPREF1058_RS17710at 364.371 kb on + strand, within HMPREF1058_RS17710at 364.398 kb on + strand, within HMPREF1058_RS17710at 364.501 kb on + strand, within HMPREF1058_RS17710at 364.501 kb on + strand, within HMPREF1058_RS17710at 364.502 kb on - strand, within HMPREF1058_RS17710at 364.552 kb on + strand, within HMPREF1058_RS17710at 364.552 kb on + strand, within HMPREF1058_RS17710at 364.553 kb on - strand, within HMPREF1058_RS17710at 364.553 kb on - strand, within HMPREF1058_RS17710at 364.553 kb on - strand, within HMPREF1058_RS17710at 364.553 kb on - strand, within HMPREF1058_RS17710at 364.554 kb on + strand, within HMPREF1058_RS17710at 364.554 kb on + strand, within HMPREF1058_RS17710at 364.555 kb on - strand, within HMPREF1058_RS17710at 364.583 kb on + strand, within HMPREF1058_RS17710at 364.583 kb on + strand, within HMPREF1058_RS17710at 364.583 kb on + strand, within HMPREF1058_RS17710at 364.587 kb on + strandat 364.588 kb on - strand, within HMPREF1058_RS17710at 364.622 kb on + strand, within HMPREF1058_RS17710at 364.650 kb on + strand, within HMPREF1058_RS17710at 364.651 kb on - strand, within HMPREF1058_RS17710at 364.658 kb on - strand, within HMPREF1058_RS17710at 364.670 kb on - strand, within HMPREF1058_RS17710at 364.671 kb on - strand, within HMPREF1058_RS17710at 364.745 kb on + strandat 364.832 kb on - strandat 364.983 kb on + strandat 364.983 kb on - strandat 364.987 kb on + strandat 364.994 kb on + strandat 364.994 kb on + strandat 364.995 kb on - strandat 364.999 kb on - strandat 364.999 kb on - strandat 365.006 kb on + strandat 365.007 kb on - strandat 365.122 kb on + strand, within HMPREF1058_RS17705at 365.123 kb on - strand, within HMPREF1058_RS17705at 365.155 kb on - strand, within HMPREF1058_RS17705at 365.243 kb on + strand, within HMPREF1058_RS17705at 365.463 kb on - strand, within HMPREF1058_RS17705at 365.464 kb on + strand, within HMPREF1058_RS17705at 365.465 kb on - strand, within HMPREF1058_RS17705at 365.541 kb on + strand, within HMPREF1058_RS17705at 365.545 kb on + strand, within HMPREF1058_RS17705at 365.639 kb on + strand, within HMPREF1058_RS17705at 365.639 kb on + strand, within HMPREF1058_RS17705at 365.639 kb on + strand, within HMPREF1058_RS17705at 365.640 kb on - strand, within HMPREF1058_RS17705at 365.640 kb on - strand, within HMPREF1058_RS17705at 365.640 kb on - strand, within HMPREF1058_RS17705at 365.694 kb on + strand, within HMPREF1058_RS17705at 365.694 kb on + strand, within HMPREF1058_RS17705at 365.694 kb on + strand, within HMPREF1058_RS17705at 365.695 kb on - strand, within HMPREF1058_RS17705at 365.695 kb on - strand, within HMPREF1058_RS17705at 365.695 kb on - strand, within HMPREF1058_RS17705at 365.696 kb on + strand, within HMPREF1058_RS17705at 365.696 kb on + strand, within HMPREF1058_RS17705at 365.696 kb on + strand, within HMPREF1058_RS17705at 365.697 kb on - strand, within HMPREF1058_RS17705at 365.698 kb on + strand, within HMPREF1058_RS17705at 365.698 kb on + strand, within HMPREF1058_RS17705at 365.773 kb on - strand, within HMPREF1058_RS17705at 365.875 kb on - strandat 365.882 kb on + strandat 365.883 kb on - strandat 365.884 kb on + strandat 365.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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361,944 - HMPREF1058_RS17715 0.44 +0.2
361,953 + HMPREF1058_RS17715 0.44 -2.4
362,162 - HMPREF1058_RS17715 0.56 -0.4
362,218 + HMPREF1058_RS17715 0.59 -2.3
362,312 - HMPREF1058_RS17715 0.65 +0.2
362,411 - HMPREF1058_RS17715 0.70 -1.9
362,493 - HMPREF1058_RS17715 0.75 -0.1
362,493 - HMPREF1058_RS17715 0.75 +0.2
362,493 - HMPREF1058_RS17715 0.75 +1.6
362,562 - HMPREF1058_RS17715 0.79 -0.6
362,602 - HMPREF1058_RS17715 0.81 -0.8
362,651 - HMPREF1058_RS17715 0.84 +0.2
362,653 - HMPREF1058_RS17715 0.84 -0.8
362,655 + HMPREF1058_RS17715 0.84 -0.2
362,655 + HMPREF1058_RS17715 0.84 -0.3
362,655 + HMPREF1058_RS17715 0.84 -1.8
362,659 - HMPREF1058_RS17715 0.85 -0.6
362,789 - +2.0
362,833 + -0.3
362,909 - -2.5
362,912 + -0.6
362,913 - -0.2
362,918 - +2.4
363,007 + +2.2
363,008 - +0.1
363,008 - +0.7
363,008 - +2.6
363,103 + +2.7
363,373 + HMPREF1058_RS17710 0.22 -0.6
363,482 - HMPREF1058_RS17710 0.27 +2.1
363,492 - HMPREF1058_RS17710 0.28 +0.6
363,585 + HMPREF1058_RS17710 0.32 +3.0
363,586 - HMPREF1058_RS17710 0.32 +0.5
363,586 - HMPREF1058_RS17710 0.32 +2.9
363,699 + HMPREF1058_RS17710 0.38 +1.1
363,699 + HMPREF1058_RS17710 0.38 -0.1
363,699 + HMPREF1058_RS17710 0.38 +2.4
363,699 + HMPREF1058_RS17710 0.38 -0.5
363,699 + HMPREF1058_RS17710 0.38 +1.4
363,701 + HMPREF1058_RS17710 0.38 -2.2
363,702 - HMPREF1058_RS17710 0.38 +1.0
363,702 - HMPREF1058_RS17710 0.38 -0.2
363,704 + HMPREF1058_RS17710 0.38 +2.2
363,704 + HMPREF1058_RS17710 0.38 +1.6
363,704 + HMPREF1058_RS17710 0.38 +1.1
363,705 - HMPREF1058_RS17710 0.38 +1.0
363,705 - HMPREF1058_RS17710 0.38 +1.8
363,706 + HMPREF1058_RS17710 0.38 +2.1
363,706 + HMPREF1058_RS17710 0.38 +1.9
363,707 - HMPREF1058_RS17710 0.38 +1.7
363,758 - HMPREF1058_RS17710 0.41 -0.2
363,768 - HMPREF1058_RS17710 0.41 +0.7
363,771 + HMPREF1058_RS17710 0.42 +0.5
363,772 - HMPREF1058_RS17710 0.42 +0.7
363,774 - HMPREF1058_RS17710 0.42 -1.2
363,774 - HMPREF1058_RS17710 0.42 +0.5
363,982 - HMPREF1058_RS17710 0.52 +2.6
364,023 + HMPREF1058_RS17710 0.54 +1.4
364,024 - HMPREF1058_RS17710 0.54 -0.5
364,062 + HMPREF1058_RS17710 0.56 +1.7
364,065 - HMPREF1058_RS17710 0.56 +0.8
364,065 - HMPREF1058_RS17710 0.56 +2.0
364,065 - HMPREF1058_RS17710 0.56 +0.6
364,085 + HMPREF1058_RS17710 0.57 +1.2
364,085 + HMPREF1058_RS17710 0.57 +1.6
364,256 - HMPREF1058_RS17710 0.66 +2.5
364,270 - HMPREF1058_RS17710 0.66 +1.2
364,270 - HMPREF1058_RS17710 0.66 +1.7
364,281 + HMPREF1058_RS17710 0.67 +0.8
364,346 + HMPREF1058_RS17710 0.70 +1.5
364,353 - HMPREF1058_RS17710 0.71 +0.8
364,354 + HMPREF1058_RS17710 0.71 +1.4
364,354 + HMPREF1058_RS17710 0.71 +1.4
364,355 - HMPREF1058_RS17710 0.71 +0.5
364,371 + HMPREF1058_RS17710 0.72 +3.2
364,371 + HMPREF1058_RS17710 0.72 +2.9
364,398 + HMPREF1058_RS17710 0.73 +0.6
364,501 + HMPREF1058_RS17710 0.78 -0.3
364,501 + HMPREF1058_RS17710 0.78 -0.4
364,502 - HMPREF1058_RS17710 0.78 +1.9
364,552 + HMPREF1058_RS17710 0.81 +2.9
364,552 + HMPREF1058_RS17710 0.81 +0.6
364,553 - HMPREF1058_RS17710 0.81 +2.3
364,553 - HMPREF1058_RS17710 0.81 +0.6
364,553 - HMPREF1058_RS17710 0.81 +1.1
364,553 - HMPREF1058_RS17710 0.81 +1.9
364,554 + HMPREF1058_RS17710 0.81 +1.8
364,554 + HMPREF1058_RS17710 0.81 +3.7
364,555 - HMPREF1058_RS17710 0.81 +0.5
364,583 + HMPREF1058_RS17710 0.82 +1.7
364,583 + HMPREF1058_RS17710 0.82 +3.3
364,583 + HMPREF1058_RS17710 0.82 +0.1
364,587 + +0.6
364,588 - HMPREF1058_RS17710 0.82 +0.6
364,622 + HMPREF1058_RS17710 0.84 +0.2
364,650 + HMPREF1058_RS17710 0.85 +1.9
364,651 - HMPREF1058_RS17710 0.85 +1.3
364,658 - HMPREF1058_RS17710 0.86 +0.9
364,670 - HMPREF1058_RS17710 0.86 +0.3
364,671 - HMPREF1058_RS17710 0.86 +2.0
364,745 + +2.4
364,832 - +1.8
364,983 + -0.7
364,983 - -0.1
364,987 + -0.6
364,994 + -1.5
364,994 + +2.0
364,995 - -0.2
364,999 - -0.5
364,999 - +0.1
365,006 + -0.9
365,007 - -1.4
365,122 + HMPREF1058_RS17705 0.14 -0.1
365,123 - HMPREF1058_RS17705 0.14 -0.6
365,155 - HMPREF1058_RS17705 0.17 -0.6
365,243 + HMPREF1058_RS17705 0.26 +0.1
365,463 - HMPREF1058_RS17705 0.49 +0.0
365,464 + HMPREF1058_RS17705 0.49 -0.4
365,465 - HMPREF1058_RS17705 0.49 -1.6
365,541 + HMPREF1058_RS17705 0.57 +1.4
365,545 + HMPREF1058_RS17705 0.57 -0.4
365,639 + HMPREF1058_RS17705 0.67 -0.7
365,639 + HMPREF1058_RS17705 0.67 -1.2
365,639 + HMPREF1058_RS17705 0.67 -0.6
365,640 - HMPREF1058_RS17705 0.67 +2.0
365,640 - HMPREF1058_RS17705 0.67 -0.2
365,640 - HMPREF1058_RS17705 0.67 +0.4
365,694 + HMPREF1058_RS17705 0.73 +2.2
365,694 + HMPREF1058_RS17705 0.73 -0.4
365,694 + HMPREF1058_RS17705 0.73 +0.4
365,695 - HMPREF1058_RS17705 0.73 -2.3
365,695 - HMPREF1058_RS17705 0.73 -0.5
365,695 - HMPREF1058_RS17705 0.73 -0.6
365,696 + HMPREF1058_RS17705 0.73 -1.8
365,696 + HMPREF1058_RS17705 0.73 -0.5
365,696 + HMPREF1058_RS17705 0.73 -0.2
365,697 - HMPREF1058_RS17705 0.73 -0.4
365,698 + HMPREF1058_RS17705 0.73 -0.2
365,698 + HMPREF1058_RS17705 0.73 +0.5
365,773 - HMPREF1058_RS17705 0.81 -1.3
365,875 - +0.2
365,882 + +1.9
365,883 - +0.3
365,884 + -0.2
365,941 - -0.9

Or see this region's nucleotide sequence