Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10975

Experiment: Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10985 and HMPREF1058_RS10980 are separated by 511 nucleotidesHMPREF1058_RS10980 and HMPREF1058_RS10975 are separated by 150 nucleotidesHMPREF1058_RS10975 and HMPREF1058_RS10970 are separated by 300 nucleotides HMPREF1058_RS10985: HMPREF1058_RS10985 - RNA methyltransferase, at 509,614 to 511,062 _RS10985 HMPREF1058_RS10980: HMPREF1058_RS10980 - hypothetical protein, at 511,574 to 511,765 _RS10980 HMPREF1058_RS10975: HMPREF1058_RS10975 - serine acetyltransferase, at 511,916 to 512,824 _RS10975 HMPREF1058_RS10970: HMPREF1058_RS10970 - ribonuclease R, at 513,125 to 515,272 _RS10970 Position (kb) 511 512 513Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 510.920 kb on + strandat 510.920 kb on + strandat 510.920 kb on + strandat 510.921 kb on - strandat 510.921 kb on - strandat 510.970 kb on + strandat 510.971 kb on - strandat 511.072 kb on + strandat 511.253 kb on - strandat 511.276 kb on + strandat 511.277 kb on - strandat 511.277 kb on - strandat 511.305 kb on - strandat 511.307 kb on - strandat 511.319 kb on + strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.448 kb on - strandat 511.457 kb on - strandat 511.510 kb on + strandat 511.511 kb on - strandat 511.511 kb on - strandat 511.713 kb on + strand, within HMPREF1058_RS10980at 511.736 kb on + strand, within HMPREF1058_RS10980at 511.737 kb on - strand, within HMPREF1058_RS10980at 511.756 kb on + strandat 511.756 kb on + strandat 511.765 kb on + strandat 511.765 kb on + strandat 511.766 kb on - strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.768 kb on - strandat 511.768 kb on - strandat 511.770 kb on - strandat 511.787 kb on - strandat 511.804 kb on + strandat 511.804 kb on + strandat 511.899 kb on - strandat 511.940 kb on + strandat 511.961 kb on + strandat 511.961 kb on + strandat 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.064 kb on - strand, within HMPREF1058_RS10975at 512.069 kb on - strand, within HMPREF1058_RS10975at 512.069 kb on - strand, within HMPREF1058_RS10975at 512.192 kb on + strand, within HMPREF1058_RS10975at 512.228 kb on + strand, within HMPREF1058_RS10975at 512.412 kb on + strand, within HMPREF1058_RS10975at 512.413 kb on - strand, within HMPREF1058_RS10975at 512.423 kb on + strand, within HMPREF1058_RS10975at 512.597 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.688 kb on - strand, within HMPREF1058_RS10975at 513.070 kb on + strandat 513.071 kb on - strandat 513.243 kb on + strandat 513.268 kb on - strandat 513.331 kb on - strandat 513.331 kb on - strandat 513.464 kb on - strand, within HMPREF1058_RS10970at 513.575 kb on - strand, within HMPREF1058_RS10970at 513.586 kb on - strand, within HMPREF1058_RS10970at 513.589 kb on - strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.620 kb on - strand, within HMPREF1058_RS10970at 513.695 kb on + strand, within HMPREF1058_RS10970at 513.696 kb on - strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.756 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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510,920 + -2.5
510,920 + -2.4
510,920 + -2.6
510,921 - +0.8
510,921 - -0.4
510,970 + -1.7
510,971 - +2.1
511,072 + -1.5
511,253 - -0.3
511,276 + -0.0
511,277 - +0.8
511,277 - +0.3
511,305 - -0.1
511,307 - +0.1
511,319 + +0.2
511,409 - -0.5
511,409 - +0.4
511,409 - -2.2
511,409 - -0.3
511,448 - -0.2
511,457 - -0.0
511,510 + -0.6
511,511 - +1.2
511,511 - +1.0
511,713 + HMPREF1058_RS10980 0.72 +0.2
511,736 + HMPREF1058_RS10980 0.84 -1.1
511,737 - HMPREF1058_RS10980 0.85 -0.9
511,756 + +1.4
511,756 + -0.3
511,765 + -0.6
511,765 + -0.5
511,766 - +0.3
511,767 + +1.4
511,767 + -0.2
511,767 + -0.5
511,767 + +0.8
511,768 - -0.1
511,768 - -1.2
511,770 - -0.1
511,787 - +0.7
511,804 + -0.4
511,804 + -0.3
511,899 - -1.1
511,940 + -4.6
511,961 + -3.9
511,961 + -5.0
512,045 + HMPREF1058_RS10975 0.14 -1.9
512,045 + HMPREF1058_RS10975 0.14 -5.7
512,045 + HMPREF1058_RS10975 0.14 -1.9
512,045 + HMPREF1058_RS10975 0.14 -4.1
512,045 + HMPREF1058_RS10975 0.14 -3.6
512,045 + HMPREF1058_RS10975 0.14 -3.9
512,064 - HMPREF1058_RS10975 0.16 -4.9
512,069 - HMPREF1058_RS10975 0.17 -2.6
512,069 - HMPREF1058_RS10975 0.17 -4.4
512,192 + HMPREF1058_RS10975 0.30 -4.4
512,228 + HMPREF1058_RS10975 0.34 -1.7
512,412 + HMPREF1058_RS10975 0.55 -3.0
512,413 - HMPREF1058_RS10975 0.55 -4.8
512,423 + HMPREF1058_RS10975 0.56 -1.2
512,597 + HMPREF1058_RS10975 0.75 -3.4
512,616 + HMPREF1058_RS10975 0.77 -3.2
512,616 + HMPREF1058_RS10975 0.77 -3.4
512,688 - HMPREF1058_RS10975 0.85 -0.5
513,070 + -0.1
513,071 - +0.8
513,243 + -0.9
513,268 - -0.7
513,331 - -1.0
513,331 - +0.9
513,464 - HMPREF1058_RS10970 0.16 -0.8
513,575 - HMPREF1058_RS10970 0.21 -0.3
513,586 - HMPREF1058_RS10970 0.21 -1.7
513,589 - HMPREF1058_RS10970 0.22 +0.5
513,619 + HMPREF1058_RS10970 0.23 +0.5
513,619 + HMPREF1058_RS10970 0.23 -1.2
513,620 - HMPREF1058_RS10970 0.23 -0.1
513,695 + HMPREF1058_RS10970 0.27 -1.6
513,696 - HMPREF1058_RS10970 0.27 +0.7
513,751 + HMPREF1058_RS10970 0.29 -0.9
513,751 + HMPREF1058_RS10970 0.29 -1.9
513,752 - HMPREF1058_RS10970 0.29 -0.8
513,752 - HMPREF1058_RS10970 0.29 -1.7
513,752 - HMPREF1058_RS10970 0.29 -1.2
513,755 + HMPREF1058_RS10970 0.29 -0.3
513,755 + HMPREF1058_RS10970 0.29 -1.2
513,756 - HMPREF1058_RS10970 0.29 -1.1
513,761 - HMPREF1058_RS10970 0.30 -0.5
513,761 - HMPREF1058_RS10970 0.30 -0.9

Or see this region's nucleotide sequence