Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21045

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04440 and HMPREF1058_RS21045 are separated by 95 nucleotidesHMPREF1058_RS21045 and HMPREF1058_RS04435 are separated by 157 nucleotidesHMPREF1058_RS04435 and HMPREF1058_RS21050 are separated by 253 nucleotidesHMPREF1058_RS21050 and HMPREF1058_RS04430 are separated by 124 nucleotides HMPREF1058_RS04440: HMPREF1058_RS04440 - hypothetical protein, at 34,908 to 36,029 _RS04440 HMPREF1058_RS21045: HMPREF1058_RS21045 - hypothetical protein, at 36,125 to 36,364 _RS21045 HMPREF1058_RS04435: HMPREF1058_RS04435 - hypothetical protein, at 36,522 to 36,779 _RS04435 HMPREF1058_RS21050: HMPREF1058_RS21050 - transposase, at 37,033 to 37,196 _RS21050 HMPREF1058_RS04430: HMPREF1058_RS04430 - alpha-1,2-fucosyltransferase, at 37,321 to 38,166 _RS04430 Position (kb) 36 37Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 35.126 kb on - strand, within HMPREF1058_RS04440at 35.135 kb on + strand, within HMPREF1058_RS04440at 35.250 kb on + strand, within HMPREF1058_RS04440at 35.274 kb on + strand, within HMPREF1058_RS04440at 35.274 kb on + strand, within HMPREF1058_RS04440at 35.304 kb on - strand, within HMPREF1058_RS04440at 35.371 kb on + strand, within HMPREF1058_RS04440at 35.371 kb on + strand, within HMPREF1058_RS04440at 35.371 kb on + strand, within HMPREF1058_RS04440at 35.371 kb on + strand, within HMPREF1058_RS04440at 35.372 kb on - strand, within HMPREF1058_RS04440at 35.372 kb on - strand, within HMPREF1058_RS04440at 35.440 kb on - strand, within HMPREF1058_RS04440at 35.440 kb on - strand, within HMPREF1058_RS04440at 35.459 kb on + strand, within HMPREF1058_RS04440at 35.460 kb on - strand, within HMPREF1058_RS04440at 35.487 kb on + strand, within HMPREF1058_RS04440at 35.490 kb on - strand, within HMPREF1058_RS04440at 35.493 kb on - strand, within HMPREF1058_RS04440at 35.493 kb on - strand, within HMPREF1058_RS04440at 35.496 kb on - strand, within HMPREF1058_RS04440at 35.501 kb on + strand, within HMPREF1058_RS04440at 35.501 kb on + strand, within HMPREF1058_RS04440at 35.502 kb on - strand, within HMPREF1058_RS04440at 35.502 kb on - strand, within HMPREF1058_RS04440at 35.502 kb on - strand, within HMPREF1058_RS04440at 35.535 kb on + strand, within HMPREF1058_RS04440at 35.551 kb on - strand, within HMPREF1058_RS04440at 35.551 kb on - strand, within HMPREF1058_RS04440at 35.754 kb on + strand, within HMPREF1058_RS04440at 35.760 kb on - strand, within HMPREF1058_RS04440at 35.819 kb on + strand, within HMPREF1058_RS04440at 35.823 kb on - strand, within HMPREF1058_RS04440at 35.840 kb on - strand, within HMPREF1058_RS04440at 35.876 kb on + strand, within HMPREF1058_RS04440at 35.878 kb on + strand, within HMPREF1058_RS04440at 35.894 kb on + strand, within HMPREF1058_RS04440at 35.894 kb on + strand, within HMPREF1058_RS04440at 35.933 kb on + strandat 35.937 kb on - strandat 36.002 kb on + strandat 36.013 kb on + strandat 36.035 kb on + strandat 36.036 kb on - strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.052 kb on + strandat 36.052 kb on + strandat 36.126 kb on + strandat 36.187 kb on + strand, within HMPREF1058_RS21045at 36.190 kb on - strand, within HMPREF1058_RS21045at 36.200 kb on + strand, within HMPREF1058_RS21045at 36.217 kb on + strand, within HMPREF1058_RS21045at 36.218 kb on - strand, within HMPREF1058_RS21045at 36.221 kb on - strand, within HMPREF1058_RS21045at 36.251 kb on + strand, within HMPREF1058_RS21045at 36.251 kb on + strand, within HMPREF1058_RS21045at 36.252 kb on - strand, within HMPREF1058_RS21045at 36.253 kb on + strand, within HMPREF1058_RS21045at 36.253 kb on + strand, within HMPREF1058_RS21045at 36.253 kb on + strand, within HMPREF1058_RS21045at 36.253 kb on + strand, within HMPREF1058_RS21045at 36.253 kb on + strand, within HMPREF1058_RS21045at 36.254 kb on - strand, within HMPREF1058_RS21045at 36.254 kb on - strand, within HMPREF1058_RS21045at 36.255 kb on + strand, within HMPREF1058_RS21045at 36.263 kb on - strand, within HMPREF1058_RS21045at 36.480 kb on + strandat 36.489 kb on - strandat 36.489 kb on - strandat 36.499 kb on + strandat 36.500 kb on + strandat 36.502 kb on + strandat 36.514 kb on - strandat 36.521 kb on + strandat 36.527 kb on + strandat 36.528 kb on - strandat 36.529 kb on + strandat 36.599 kb on + strand, within HMPREF1058_RS04435at 36.614 kb on + strand, within HMPREF1058_RS04435at 36.638 kb on - strand, within HMPREF1058_RS04435at 36.643 kb on - strand, within HMPREF1058_RS04435at 36.652 kb on + strand, within HMPREF1058_RS04435at 36.653 kb on - strand, within HMPREF1058_RS04435at 36.653 kb on - strand, within HMPREF1058_RS04435at 36.679 kb on + strand, within HMPREF1058_RS04435at 36.680 kb on - strand, within HMPREF1058_RS04435at 36.680 kb on - strand, within HMPREF1058_RS04435at 36.708 kb on + strand, within HMPREF1058_RS04435at 36.799 kb on + strandat 36.938 kb on + strandat 36.939 kb on - strandat 37.178 kb on + strand, within HMPREF1058_RS21050at 37.178 kb on + strand, within HMPREF1058_RS21050at 37.181 kb on + strandat 37.225 kb on + strandat 37.312 kb on + strandat 37.312 kb on + strandat 37.355 kb on + strandat 37.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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35,126 - HMPREF1058_RS04440 0.19 -1.2
35,135 + HMPREF1058_RS04440 0.20 -1.1
35,250 + HMPREF1058_RS04440 0.30 +0.1
35,274 + HMPREF1058_RS04440 0.33 +1.5
35,274 + HMPREF1058_RS04440 0.33 -0.2
35,304 - HMPREF1058_RS04440 0.35 -1.9
35,371 + HMPREF1058_RS04440 0.41 +1.1
35,371 + HMPREF1058_RS04440 0.41 +0.5
35,371 + HMPREF1058_RS04440 0.41 -0.3
35,371 + HMPREF1058_RS04440 0.41 -0.1
35,372 - HMPREF1058_RS04440 0.41 -1.1
35,372 - HMPREF1058_RS04440 0.41 +0.3
35,440 - HMPREF1058_RS04440 0.47 -0.9
35,440 - HMPREF1058_RS04440 0.47 -0.5
35,459 + HMPREF1058_RS04440 0.49 -0.1
35,460 - HMPREF1058_RS04440 0.49 -0.7
35,487 + HMPREF1058_RS04440 0.52 -1.0
35,490 - HMPREF1058_RS04440 0.52 -0.8
35,493 - HMPREF1058_RS04440 0.52 -1.9
35,493 - HMPREF1058_RS04440 0.52 +0.5
35,496 - HMPREF1058_RS04440 0.52 +0.3
35,501 + HMPREF1058_RS04440 0.53 -0.7
35,501 + HMPREF1058_RS04440 0.53 -0.5
35,502 - HMPREF1058_RS04440 0.53 +0.5
35,502 - HMPREF1058_RS04440 0.53 +1.9
35,502 - HMPREF1058_RS04440 0.53 -1.1
35,535 + HMPREF1058_RS04440 0.56 -1.0
35,551 - HMPREF1058_RS04440 0.57 -0.1
35,551 - HMPREF1058_RS04440 0.57 +1.1
35,754 + HMPREF1058_RS04440 0.75 -0.1
35,760 - HMPREF1058_RS04440 0.76 -2.6
35,819 + HMPREF1058_RS04440 0.81 -0.1
35,823 - HMPREF1058_RS04440 0.82 -2.2
35,840 - HMPREF1058_RS04440 0.83 +1.3
35,876 + HMPREF1058_RS04440 0.86 -0.8
35,878 + HMPREF1058_RS04440 0.86 +4.3
35,894 + HMPREF1058_RS04440 0.88 +0.2
35,894 + HMPREF1058_RS04440 0.88 -2.2
35,933 + +0.3
35,937 - +0.5
36,002 + -0.8
36,013 + -0.3
36,035 + -1.4
36,036 - -2.3
36,037 + +0.4
36,038 - -0.3
36,052 + +1.9
36,052 + -1.7
36,126 + +1.7
36,187 + HMPREF1058_RS21045 0.26 -0.1
36,190 - HMPREF1058_RS21045 0.27 +1.2
36,200 + HMPREF1058_RS21045 0.31 -1.7
36,217 + HMPREF1058_RS21045 0.38 +2.5
36,218 - HMPREF1058_RS21045 0.39 +0.3
36,221 - HMPREF1058_RS21045 0.40 -1.0
36,251 + HMPREF1058_RS21045 0.53 -0.1
36,251 + HMPREF1058_RS21045 0.53 -0.8
36,252 - HMPREF1058_RS21045 0.53 -0.9
36,253 + HMPREF1058_RS21045 0.53 -0.8
36,253 + HMPREF1058_RS21045 0.53 -0.1
36,253 + HMPREF1058_RS21045 0.53 -1.2
36,253 + HMPREF1058_RS21045 0.53 -0.6
36,253 + HMPREF1058_RS21045 0.53 -1.6
36,254 - HMPREF1058_RS21045 0.54 -0.3
36,254 - HMPREF1058_RS21045 0.54 +1.5
36,255 + HMPREF1058_RS21045 0.54 +0.2
36,263 - HMPREF1058_RS21045 0.57 +0.9
36,480 + -1.3
36,489 - -0.1
36,489 - +1.5
36,499 + -1.6
36,500 + -1.7
36,502 + -1.6
36,514 - -1.8
36,521 + +1.7
36,527 + -0.1
36,528 - -0.3
36,529 + -0.2
36,599 + HMPREF1058_RS04435 0.30 -0.9
36,614 + HMPREF1058_RS04435 0.36 -1.0
36,638 - HMPREF1058_RS04435 0.45 -1.0
36,643 - HMPREF1058_RS04435 0.47 -0.3
36,652 + HMPREF1058_RS04435 0.50 -2.2
36,653 - HMPREF1058_RS04435 0.51 -1.1
36,653 - HMPREF1058_RS04435 0.51 +2.5
36,679 + HMPREF1058_RS04435 0.61 -1.3
36,680 - HMPREF1058_RS04435 0.61 +1.0
36,680 - HMPREF1058_RS04435 0.61 +3.0
36,708 + HMPREF1058_RS04435 0.72 +0.2
36,799 + -1.0
36,938 + +2.4
36,939 - -0.3
37,178 + HMPREF1058_RS21050 0.88 -1.9
37,178 + HMPREF1058_RS21050 0.88 -1.6
37,181 + +1.7
37,225 + +0.6
37,312 + -0.3
37,312 + +0.3
37,355 + -0.6
37,356 - -1.7

Or see this region's nucleotide sequence