Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00545 and HMPREF1058_RS00540 are separated by 7 nucleotides HMPREF1058_RS00540 and HMPREF1058_RS00535 are separated by 18 nucleotides HMPREF1058_RS00535 and HMPREF1058_RS00530 are separated by 11 nucleotides
HMPREF1058_RS00545: HMPREF1058_RS00545 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 56,534 to 57,682
_RS00545
HMPREF1058_RS00540: HMPREF1058_RS00540 - M23 family metallopeptidase, at 57,690 to 58,547
_RS00540
HMPREF1058_RS00535: HMPREF1058_RS00535 - 16S rRNA processing protein RimM, at 58,566 to 59,084
_RS00535
HMPREF1058_RS00530: HMPREF1058_RS00530 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 59,096 to 60,400
_RS00530
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 57.857 kb on - strand, within HMPREF1058_RS00540 at 57.917 kb on - strand, within HMPREF1058_RS00540 at 57.917 kb on - strand, within HMPREF1058_RS00540 at 58.038 kb on - strand, within HMPREF1058_RS00540 at 58.071 kb on - strand, within HMPREF1058_RS00540 at 58.115 kb on - strand, within HMPREF1058_RS00540 at 58.115 kb on - strand, within HMPREF1058_RS00540 at 58.224 kb on - strand, within HMPREF1058_RS00540 at 58.248 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.250 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.335 kb on - strand, within HMPREF1058_RS00540 at 58.473 kb on - strand at 58.564 kb on - strand at 58.564 kb on - strand at 59.108 kb on - strand at 59.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 57,857 - HMPREF1058_RS00540 0.19 -2.0 57,917 - HMPREF1058_RS00540 0.26 -3.5 57,917 - HMPREF1058_RS00540 0.26 -1.0 58,038 - HMPREF1058_RS00540 0.41 -2.3 58,071 - HMPREF1058_RS00540 0.44 -4.6 58,115 - HMPREF1058_RS00540 0.50 -3.4 58,115 - HMPREF1058_RS00540 0.50 -1.6 58,224 - HMPREF1058_RS00540 0.62 -3.2 58,248 - HMPREF1058_RS00540 0.65 -1.4 58,250 - HMPREF1058_RS00540 0.65 -2.5 58,250 - HMPREF1058_RS00540 0.65 -0.5 58,250 - HMPREF1058_RS00540 0.65 -0.0 58,250 - HMPREF1058_RS00540 0.65 -3.2 58,335 - HMPREF1058_RS00540 0.75 -3.4 58,335 - HMPREF1058_RS00540 0.75 -4.3 58,335 - HMPREF1058_RS00540 0.75 -1.0 58,473 - -1.7 58,564 - +0.1 58,564 - -1.6 59,108 - -0.3 59,108 - -1.0
Or see this region's nucleotide sequence