Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20210

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18460 and HMPREF1058_RS18455 are separated by 39 nucleotidesHMPREF1058_RS18455 and HMPREF1058_RS20210 are separated by 7 nucleotidesHMPREF1058_RS20210 and HMPREF1058_RS18450 are separated by 2 nucleotides HMPREF1058_RS18460: HMPREF1058_RS18460 - glycosyltransferase, at 148,187 to 149,287 _RS18460 HMPREF1058_RS18455: HMPREF1058_RS18455 - hypothetical protein, at 149,327 to 150,259 _RS18455 HMPREF1058_RS20210: HMPREF1058_RS20210 - glycosyltransferase, at 150,267 to 151,298 _RS20210 HMPREF1058_RS18450: HMPREF1058_RS18450 - oligosaccharide repeat unit polymerase, at 151,301 to 152,614 _RS18450 Position (kb) 150 151 152Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 149.357 kb on + strandat 149.621 kb on - strand, within HMPREF1058_RS18455at 149.713 kb on + strand, within HMPREF1058_RS18455at 149.715 kb on + strand, within HMPREF1058_RS18455at 149.715 kb on + strand, within HMPREF1058_RS18455at 149.715 kb on + strand, within HMPREF1058_RS18455at 149.715 kb on + strand, within HMPREF1058_RS18455at 149.716 kb on - strand, within HMPREF1058_RS18455at 149.750 kb on - strand, within HMPREF1058_RS18455at 149.752 kb on - strand, within HMPREF1058_RS18455at 149.775 kb on + strand, within HMPREF1058_RS18455at 149.798 kb on - strand, within HMPREF1058_RS18455at 149.851 kb on + strand, within HMPREF1058_RS18455at 149.853 kb on + strand, within HMPREF1058_RS18455at 149.959 kb on + strand, within HMPREF1058_RS18455at 149.961 kb on + strand, within HMPREF1058_RS18455at 149.962 kb on - strand, within HMPREF1058_RS18455at 149.962 kb on - strand, within HMPREF1058_RS18455at 149.985 kb on - strand, within HMPREF1058_RS18455at 150.002 kb on + strand, within HMPREF1058_RS18455at 150.012 kb on - strand, within HMPREF1058_RS18455at 150.206 kb on + strandat 150.206 kb on + strandat 150.207 kb on - strandat 150.207 kb on - strandat 150.210 kb on + strandat 150.319 kb on - strandat 150.378 kb on - strand, within HMPREF1058_RS20210at 150.512 kb on + strand, within HMPREF1058_RS20210at 150.527 kb on + strand, within HMPREF1058_RS20210at 150.527 kb on + strand, within HMPREF1058_RS20210at 150.528 kb on - strand, within HMPREF1058_RS20210at 150.531 kb on - strand, within HMPREF1058_RS20210at 150.572 kb on + strand, within HMPREF1058_RS20210at 150.574 kb on + strand, within HMPREF1058_RS20210at 150.575 kb on - strand, within HMPREF1058_RS20210at 150.575 kb on - strand, within HMPREF1058_RS20210at 150.575 kb on - strand, within HMPREF1058_RS20210at 150.575 kb on - strand, within HMPREF1058_RS20210at 150.577 kb on - strand, within HMPREF1058_RS20210at 150.577 kb on - strand, within HMPREF1058_RS20210at 150.659 kb on + strand, within HMPREF1058_RS20210at 150.660 kb on - strand, within HMPREF1058_RS20210at 150.685 kb on + strand, within HMPREF1058_RS20210at 150.693 kb on + strand, within HMPREF1058_RS20210at 150.694 kb on - strand, within HMPREF1058_RS20210at 150.694 kb on - strand, within HMPREF1058_RS20210at 150.712 kb on + strand, within HMPREF1058_RS20210at 150.763 kb on + strand, within HMPREF1058_RS20210at 150.763 kb on + strand, within HMPREF1058_RS20210at 150.764 kb on - strand, within HMPREF1058_RS20210at 150.824 kb on + strand, within HMPREF1058_RS20210at 150.824 kb on + strand, within HMPREF1058_RS20210at 150.868 kb on - strand, within HMPREF1058_RS20210at 150.960 kb on + strand, within HMPREF1058_RS20210at 150.961 kb on - strand, within HMPREF1058_RS20210at 151.036 kb on + strand, within HMPREF1058_RS20210at 151.037 kb on - strand, within HMPREF1058_RS20210at 151.085 kb on + strand, within HMPREF1058_RS20210at 151.141 kb on + strand, within HMPREF1058_RS20210at 151.183 kb on - strand, within HMPREF1058_RS20210at 151.189 kb on - strand, within HMPREF1058_RS20210at 151.189 kb on - strand, within HMPREF1058_RS20210at 151.194 kb on + strand, within HMPREF1058_RS20210at 151.194 kb on + strand, within HMPREF1058_RS20210at 151.199 kb on + strandat 151.264 kb on + strandat 151.268 kb on + strandat 151.313 kb on + strandat 151.318 kb on - strandat 151.329 kb on - strandat 151.365 kb on + strandat 151.365 kb on + strandat 151.369 kb on + strandat 151.379 kb on + strandat 151.398 kb on - strandat 151.398 kb on - strandat 151.399 kb on + strandat 151.458 kb on + strand, within HMPREF1058_RS18450at 151.467 kb on - strand, within HMPREF1058_RS18450at 151.513 kb on + strand, within HMPREF1058_RS18450at 151.534 kb on + strand, within HMPREF1058_RS18450at 151.534 kb on + strand, within HMPREF1058_RS18450at 151.608 kb on + strand, within HMPREF1058_RS18450at 151.610 kb on + strand, within HMPREF1058_RS18450at 151.624 kb on + strand, within HMPREF1058_RS18450at 151.625 kb on - strand, within HMPREF1058_RS18450at 151.625 kb on - strand, within HMPREF1058_RS18450at 151.635 kb on - strand, within HMPREF1058_RS18450at 151.635 kb on - strand, within HMPREF1058_RS18450at 151.635 kb on - strand, within HMPREF1058_RS18450at 151.687 kb on - strand, within HMPREF1058_RS18450at 151.717 kb on + strand, within HMPREF1058_RS18450at 151.735 kb on + strand, within HMPREF1058_RS18450at 151.797 kb on - strand, within HMPREF1058_RS18450at 151.915 kb on + strand, within HMPREF1058_RS18450at 151.935 kb on + strand, within HMPREF1058_RS18450at 151.936 kb on - strand, within HMPREF1058_RS18450at 151.970 kb on + strand, within HMPREF1058_RS18450at 151.970 kb on + strand, within HMPREF1058_RS18450at 151.971 kb on - strand, within HMPREF1058_RS18450at 151.973 kb on + strand, within HMPREF1058_RS18450at 152.015 kb on + strand, within HMPREF1058_RS18450at 152.015 kb on + strand, within HMPREF1058_RS18450at 152.083 kb on + strand, within HMPREF1058_RS18450at 152.084 kb on - strand, within HMPREF1058_RS18450at 152.090 kb on - strand, within HMPREF1058_RS18450at 152.106 kb on - strand, within HMPREF1058_RS18450at 152.126 kb on - strand, within HMPREF1058_RS18450at 152.128 kb on + strand, within HMPREF1058_RS18450at 152.131 kb on + strand, within HMPREF1058_RS18450at 152.210 kb on + strand, within HMPREF1058_RS18450at 152.253 kb on + strand, within HMPREF1058_RS18450at 152.253 kb on + strand, within HMPREF1058_RS18450at 152.277 kb on - strand, within HMPREF1058_RS18450at 152.280 kb on - strand, within HMPREF1058_RS18450at 152.288 kb on + strand, within HMPREF1058_RS18450at 152.292 kb on - strand, within HMPREF1058_RS18450

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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149,357 + +0.4
149,621 - HMPREF1058_RS18455 0.32 +0.2
149,713 + HMPREF1058_RS18455 0.41 +0.7
149,715 + HMPREF1058_RS18455 0.42 +0.2
149,715 + HMPREF1058_RS18455 0.42 +1.9
149,715 + HMPREF1058_RS18455 0.42 +0.3
149,715 + HMPREF1058_RS18455 0.42 -1.8
149,716 - HMPREF1058_RS18455 0.42 +2.5
149,750 - HMPREF1058_RS18455 0.45 +0.9
149,752 - HMPREF1058_RS18455 0.46 -1.1
149,775 + HMPREF1058_RS18455 0.48 +0.9
149,798 - HMPREF1058_RS18455 0.50 +4.6
149,851 + HMPREF1058_RS18455 0.56 -0.8
149,853 + HMPREF1058_RS18455 0.56 -0.2
149,959 + HMPREF1058_RS18455 0.68 +2.0
149,961 + HMPREF1058_RS18455 0.68 -1.3
149,962 - HMPREF1058_RS18455 0.68 +0.7
149,962 - HMPREF1058_RS18455 0.68 -0.7
149,985 - HMPREF1058_RS18455 0.71 +2.1
150,002 + HMPREF1058_RS18455 0.72 -2.8
150,012 - HMPREF1058_RS18455 0.73 +2.3
150,206 + +1.0
150,206 + +0.5
150,207 - +3.0
150,207 - +1.4
150,210 + -0.7
150,319 - +4.1
150,378 - HMPREF1058_RS20210 0.11 -0.1
150,512 + HMPREF1058_RS20210 0.24 +0.7
150,527 + HMPREF1058_RS20210 0.25 -0.3
150,527 + HMPREF1058_RS20210 0.25 -1.7
150,528 - HMPREF1058_RS20210 0.25 +0.2
150,531 - HMPREF1058_RS20210 0.26 +4.0
150,572 + HMPREF1058_RS20210 0.30 +2.1
150,574 + HMPREF1058_RS20210 0.30 +1.5
150,575 - HMPREF1058_RS20210 0.30 +3.6
150,575 - HMPREF1058_RS20210 0.30 +4.2
150,575 - HMPREF1058_RS20210 0.30 +4.1
150,575 - HMPREF1058_RS20210 0.30 +4.1
150,577 - HMPREF1058_RS20210 0.30 +1.1
150,577 - HMPREF1058_RS20210 0.30 +0.9
150,659 + HMPREF1058_RS20210 0.38 +1.2
150,660 - HMPREF1058_RS20210 0.38 +0.5
150,685 + HMPREF1058_RS20210 0.41 +1.4
150,693 + HMPREF1058_RS20210 0.41 -0.6
150,694 - HMPREF1058_RS20210 0.41 +4.9
150,694 - HMPREF1058_RS20210 0.41 +3.4
150,712 + HMPREF1058_RS20210 0.43 -1.0
150,763 + HMPREF1058_RS20210 0.48 +1.7
150,763 + HMPREF1058_RS20210 0.48 +0.9
150,764 - HMPREF1058_RS20210 0.48 +3.7
150,824 + HMPREF1058_RS20210 0.54 -0.0
150,824 + HMPREF1058_RS20210 0.54 -1.7
150,868 - HMPREF1058_RS20210 0.58 +1.6
150,960 + HMPREF1058_RS20210 0.67 +1.6
150,961 - HMPREF1058_RS20210 0.67 +2.9
151,036 + HMPREF1058_RS20210 0.75 +2.9
151,037 - HMPREF1058_RS20210 0.75 +1.5
151,085 + HMPREF1058_RS20210 0.79 +0.8
151,141 + HMPREF1058_RS20210 0.85 +0.4
151,183 - HMPREF1058_RS20210 0.89 +1.8
151,189 - HMPREF1058_RS20210 0.89 +2.3
151,189 - HMPREF1058_RS20210 0.89 +2.4
151,194 + HMPREF1058_RS20210 0.90 -2.2
151,194 + HMPREF1058_RS20210 0.90 +0.6
151,199 + -0.7
151,264 + -1.0
151,268 + +0.5
151,313 + -2.2
151,318 - +3.6
151,329 - +2.1
151,365 + -2.1
151,365 + +0.5
151,369 + +0.9
151,379 + -2.1
151,398 - +4.4
151,398 - +2.3
151,399 + +0.2
151,458 + HMPREF1058_RS18450 0.12 -0.3
151,467 - HMPREF1058_RS18450 0.13 +4.1
151,513 + HMPREF1058_RS18450 0.16 -0.4
151,534 + HMPREF1058_RS18450 0.18 -0.7
151,534 + HMPREF1058_RS18450 0.18 +0.9
151,608 + HMPREF1058_RS18450 0.23 -0.5
151,610 + HMPREF1058_RS18450 0.24 -1.1
151,624 + HMPREF1058_RS18450 0.25 +2.4
151,625 - HMPREF1058_RS18450 0.25 +1.8
151,625 - HMPREF1058_RS18450 0.25 +1.9
151,635 - HMPREF1058_RS18450 0.25 -0.3
151,635 - HMPREF1058_RS18450 0.25 +2.5
151,635 - HMPREF1058_RS18450 0.25 +2.0
151,687 - HMPREF1058_RS18450 0.29 +4.4
151,717 + HMPREF1058_RS18450 0.32 +1.4
151,735 + HMPREF1058_RS18450 0.33 -0.8
151,797 - HMPREF1058_RS18450 0.38 +4.9
151,915 + HMPREF1058_RS18450 0.47 +0.2
151,935 + HMPREF1058_RS18450 0.48 +0.9
151,936 - HMPREF1058_RS18450 0.48 +5.9
151,970 + HMPREF1058_RS18450 0.51 -0.1
151,970 + HMPREF1058_RS18450 0.51 +0.2
151,971 - HMPREF1058_RS18450 0.51 +2.5
151,973 + HMPREF1058_RS18450 0.51 -0.3
152,015 + HMPREF1058_RS18450 0.54 -0.1
152,015 + HMPREF1058_RS18450 0.54 -0.4
152,083 + HMPREF1058_RS18450 0.60 -0.8
152,084 - HMPREF1058_RS18450 0.60 +1.9
152,090 - HMPREF1058_RS18450 0.60 +2.6
152,106 - HMPREF1058_RS18450 0.61 +0.6
152,126 - HMPREF1058_RS18450 0.63 +4.0
152,128 + HMPREF1058_RS18450 0.63 -1.5
152,131 + HMPREF1058_RS18450 0.63 +1.5
152,210 + HMPREF1058_RS18450 0.69 -1.3
152,253 + HMPREF1058_RS18450 0.72 +1.8
152,253 + HMPREF1058_RS18450 0.72 +0.0
152,277 - HMPREF1058_RS18450 0.74 +2.5
152,280 - HMPREF1058_RS18450 0.75 +0.2
152,288 + HMPREF1058_RS18450 0.75 -1.0
152,292 - HMPREF1058_RS18450 0.75 +0.5

Or see this region's nucleotide sequence