Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17705 and HMPREF1058_RS17700 are separated by 15 nucleotides HMPREF1058_RS17700 and HMPREF1058_RS17695 are separated by 677 nucleotides
HMPREF1058_RS17705: HMPREF1058_RS17705 - J domain-containing protein, at 364,988 to 365,959
_RS17705
HMPREF1058_RS17700: HMPREF1058_RS17700 - chaperone modulator CbpM, at 365,975 to 366,262
_RS17700
HMPREF1058_RS17695: HMPREF1058_RS17695 - YihY/virulence factor BrkB family protein, at 366,940 to 368,259
_RS17695
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.983 kb on + strand at 364.983 kb on - strand at 364.987 kb on + strand at 364.994 kb on + strand at 364.994 kb on + strand at 364.995 kb on - strand at 364.999 kb on - strand at 364.999 kb on - strand at 365.006 kb on + strand at 365.007 kb on - strand at 365.122 kb on + strand, within HMPREF1058_RS17705 at 365.123 kb on - strand, within HMPREF1058_RS17705 at 365.155 kb on - strand, within HMPREF1058_RS17705 at 365.243 kb on + strand, within HMPREF1058_RS17705 at 365.463 kb on - strand, within HMPREF1058_RS17705 at 365.464 kb on + strand, within HMPREF1058_RS17705 at 365.465 kb on - strand, within HMPREF1058_RS17705 at 365.541 kb on + strand, within HMPREF1058_RS17705 at 365.545 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.697 kb on - strand, within HMPREF1058_RS17705 at 365.698 kb on + strand, within HMPREF1058_RS17705 at 365.698 kb on + strand, within HMPREF1058_RS17705 at 365.773 kb on - strand, within HMPREF1058_RS17705 at 365.875 kb on - strand at 365.882 kb on + strand at 365.883 kb on - strand at 365.884 kb on + strand at 365.941 kb on - strand at 365.992 kb on + strand at 365.995 kb on + strand at 366.141 kb on + strand, within HMPREF1058_RS17700 at 366.141 kb on + strand, within HMPREF1058_RS17700 at 366.142 kb on - strand, within HMPREF1058_RS17700 at 366.163 kb on + strand, within HMPREF1058_RS17700 at 366.205 kb on - strand, within HMPREF1058_RS17700 at 366.357 kb on + strand at 366.359 kb on + strand at 366.411 kb on - strand at 366.412 kb on + strand at 366.413 kb on - strand at 366.413 kb on - strand at 366.413 kb on - strand at 366.502 kb on + strand at 366.912 kb on - strand at 366.912 kb on - strand at 366.914 kb on - strand at 366.914 kb on - strand at 366.987 kb on + strand at 367.031 kb on + strand at 367.032 kb on - strand at 367.036 kb on + strand at 367.036 kb on + strand at 367.037 kb on - strand at 367.038 kb on + strand at 367.089 kb on + strand, within HMPREF1058_RS17695 at 367.117 kb on + strand, within HMPREF1058_RS17695 at 367.118 kb on - strand, within HMPREF1058_RS17695 at 367.118 kb on - strand, within HMPREF1058_RS17695 at 367.157 kb on + strand, within HMPREF1058_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 364,983 + -0.6 364,983 - +0.0 364,987 + +0.1 364,994 + -1.4 364,994 + +2.5 364,995 - +0.9 364,999 - +1.6 364,999 - -2.0 365,006 + -1.2 365,007 - -0.3 365,122 + HMPREF1058_RS17705 0.14 -1.0 365,123 - HMPREF1058_RS17705 0.14 -0.2 365,155 - HMPREF1058_RS17705 0.17 -1.1 365,243 + HMPREF1058_RS17705 0.26 -2.6 365,463 - HMPREF1058_RS17705 0.49 -1.2 365,464 + HMPREF1058_RS17705 0.49 -0.9 365,465 - HMPREF1058_RS17705 0.49 +1.1 365,541 + HMPREF1058_RS17705 0.57 -0.9 365,545 + HMPREF1058_RS17705 0.57 -2.4 365,639 + HMPREF1058_RS17705 0.67 -0.3 365,639 + HMPREF1058_RS17705 0.67 -0.7 365,639 + HMPREF1058_RS17705 0.67 -1.1 365,640 - HMPREF1058_RS17705 0.67 +1.4 365,640 - HMPREF1058_RS17705 0.67 -0.1 365,640 - HMPREF1058_RS17705 0.67 -0.8 365,694 + HMPREF1058_RS17705 0.73 -0.4 365,694 + HMPREF1058_RS17705 0.73 -0.9 365,694 + HMPREF1058_RS17705 0.73 +1.2 365,695 - HMPREF1058_RS17705 0.73 +2.7 365,695 - HMPREF1058_RS17705 0.73 +0.9 365,695 - HMPREF1058_RS17705 0.73 +2.5 365,696 + HMPREF1058_RS17705 0.73 -0.7 365,696 + HMPREF1058_RS17705 0.73 +1.9 365,696 + HMPREF1058_RS17705 0.73 -0.1 365,697 - HMPREF1058_RS17705 0.73 -0.2 365,698 + HMPREF1058_RS17705 0.73 -0.5 365,698 + HMPREF1058_RS17705 0.73 +1.1 365,773 - HMPREF1058_RS17705 0.81 -1.0 365,875 - -0.4 365,882 + -2.7 365,883 - +0.1 365,884 + -0.1 365,941 - +0.1 365,992 + -0.5 365,995 + +0.1 366,141 + HMPREF1058_RS17700 0.58 -1.3 366,141 + HMPREF1058_RS17700 0.58 -0.1 366,142 - HMPREF1058_RS17700 0.58 +1.1 366,163 + HMPREF1058_RS17700 0.65 +0.4 366,205 - HMPREF1058_RS17700 0.80 +1.5 366,357 + +0.5 366,359 + +2.1 366,411 - +0.7 366,412 + +2.5 366,413 - +0.1 366,413 - -0.5 366,413 - -0.3 366,502 + -2.1 366,912 - -0.5 366,912 - -1.2 366,914 - +0.2 366,914 - -1.4 366,987 + +1.8 367,031 + -1.9 367,032 - -0.5 367,036 + -1.3 367,036 + -1.4 367,037 - +0.1 367,038 + +0.3 367,089 + HMPREF1058_RS17695 0.11 +0.1 367,117 + HMPREF1058_RS17695 0.13 -2.5 367,118 - HMPREF1058_RS17695 0.13 -1.5 367,118 - HMPREF1058_RS17695 0.13 -0.5 367,157 + HMPREF1058_RS17695 0.16 +0.9
Or see this region's nucleotide sequence