Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15655

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15660 and HMPREF1058_RS15655 are separated by 196 nucleotidesHMPREF1058_RS15655 and HMPREF1058_RS15650 are separated by 26 nucleotides HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341 _RS15660 HMPREF1058_RS15655: HMPREF1058_RS15655 - galactose mutarotase, at 864,538 to 865,692 _RS15655 HMPREF1058_RS15650: HMPREF1058_RS15650 - sodium:solute symporter, at 865,719 to 867,461 _RS15650 Position (kb) 864 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 863.553 kb on - strand, within HMPREF1058_RS15660at 863.579 kb on + strand, within HMPREF1058_RS15660at 863.580 kb on - strand, within HMPREF1058_RS15660at 863.584 kb on - strand, within HMPREF1058_RS15660at 863.648 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.681 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.930 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.994 kb on + strand, within HMPREF1058_RS15660at 864.019 kb on + strand, within HMPREF1058_RS15660at 864.065 kb on - strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660at 864.232 kb on + strandat 864.308 kb on - strandat 864.337 kb on + strandat 864.365 kb on + strandat 864.451 kb on + strandat 864.451 kb on + strandat 864.508 kb on + strandat 864.517 kb on - strandat 864.532 kb on + strandat 864.534 kb on + strandat 864.652 kb on - strandat 864.725 kb on + strand, within HMPREF1058_RS15655at 864.725 kb on + strand, within HMPREF1058_RS15655at 864.725 kb on + strand, within HMPREF1058_RS15655at 864.750 kb on + strand, within HMPREF1058_RS15655at 864.756 kb on - strand, within HMPREF1058_RS15655at 864.760 kb on - strand, within HMPREF1058_RS15655at 864.789 kb on - strand, within HMPREF1058_RS15655at 864.798 kb on - strand, within HMPREF1058_RS15655at 864.885 kb on + strand, within HMPREF1058_RS15655at 864.885 kb on + strand, within HMPREF1058_RS15655at 864.886 kb on - strand, within HMPREF1058_RS15655at 864.963 kb on + strand, within HMPREF1058_RS15655at 865.012 kb on - strand, within HMPREF1058_RS15655at 865.015 kb on - strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.085 kb on - strand, within HMPREF1058_RS15655at 865.085 kb on - strand, within HMPREF1058_RS15655at 865.472 kb on + strand, within HMPREF1058_RS15655at 865.472 kb on + strand, within HMPREF1058_RS15655at 865.472 kb on + strand, within HMPREF1058_RS15655at 865.472 kb on + strand, within HMPREF1058_RS15655at 865.473 kb on - strand, within HMPREF1058_RS15655at 865.479 kb on + strand, within HMPREF1058_RS15655at 865.480 kb on - strand, within HMPREF1058_RS15655at 865.548 kb on + strand, within HMPREF1058_RS15655at 865.548 kb on + strand, within HMPREF1058_RS15655at 865.549 kb on - strand, within HMPREF1058_RS15655at 865.628 kb on + strandat 865.651 kb on + strandat 865.652 kb on - strandat 865.652 kb on - strandat 865.665 kb on + strandat 865.665 kb on + strandat 865.666 kb on - strandat 865.704 kb on + strandat 865.709 kb on - strandat 865.716 kb on - strandat 865.762 kb on + strandat 865.780 kb on + strandat 865.781 kb on - strandat 866.034 kb on + strand, within HMPREF1058_RS15650at 866.044 kb on + strand, within HMPREF1058_RS15650at 866.099 kb on + strand, within HMPREF1058_RS15650at 866.145 kb on + strand, within HMPREF1058_RS15650at 866.146 kb on - strand, within HMPREF1058_RS15650at 866.176 kb on - strand, within HMPREF1058_RS15650at 866.203 kb on + strand, within HMPREF1058_RS15650at 866.241 kb on - strand, within HMPREF1058_RS15650at 866.376 kb on - strand, within HMPREF1058_RS15650at 866.378 kb on + strand, within HMPREF1058_RS15650at 866.378 kb on + strand, within HMPREF1058_RS15650at 866.379 kb on - strand, within HMPREF1058_RS15650at 866.466 kb on - strand, within HMPREF1058_RS15650at 866.497 kb on - strand, within HMPREF1058_RS15650at 866.645 kb on + strand, within HMPREF1058_RS15650at 866.646 kb on - strand, within HMPREF1058_RS15650at 866.646 kb on - strand, within HMPREF1058_RS15650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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863,553 - HMPREF1058_RS15660 0.32 -2.3
863,579 + HMPREF1058_RS15660 0.34 +0.0
863,580 - HMPREF1058_RS15660 0.34 +0.9
863,584 - HMPREF1058_RS15660 0.34 -3.0
863,648 - HMPREF1058_RS15660 0.40 -0.8
863,671 - HMPREF1058_RS15660 0.42 +0.1
863,671 - HMPREF1058_RS15660 0.42 -0.4
863,681 - HMPREF1058_RS15660 0.43 -1.1
863,770 - HMPREF1058_RS15660 0.50 -0.5
863,770 - HMPREF1058_RS15660 0.50 -0.1
863,930 + HMPREF1058_RS15660 0.64 -1.2
863,979 + HMPREF1058_RS15660 0.69 +0.3
863,979 + HMPREF1058_RS15660 0.69 -0.6
863,981 + HMPREF1058_RS15660 0.69 -1.5
863,981 + HMPREF1058_RS15660 0.69 -0.3
863,994 + HMPREF1058_RS15660 0.70 -0.3
864,019 + HMPREF1058_RS15660 0.72 -1.7
864,065 - HMPREF1058_RS15660 0.76 +1.0
864,115 + HMPREF1058_RS15660 0.80 +2.4
864,115 + HMPREF1058_RS15660 0.80 -0.6
864,232 + -0.9
864,308 - -0.1
864,337 + -2.4
864,365 + -0.9
864,451 + -0.6
864,451 + -0.4
864,508 + +1.8
864,517 - -0.6
864,532 + -3.3
864,534 + +0.4
864,652 - +0.8
864,725 + HMPREF1058_RS15655 0.16 -1.9
864,725 + HMPREF1058_RS15655 0.16 -0.2
864,725 + HMPREF1058_RS15655 0.16 -0.8
864,750 + HMPREF1058_RS15655 0.18 -0.2
864,756 - HMPREF1058_RS15655 0.19 -1.1
864,760 - HMPREF1058_RS15655 0.19 -0.1
864,789 - HMPREF1058_RS15655 0.22 -0.4
864,798 - HMPREF1058_RS15655 0.23 -2.5
864,885 + HMPREF1058_RS15655 0.30 +1.4
864,885 + HMPREF1058_RS15655 0.30 +0.7
864,886 - HMPREF1058_RS15655 0.30 +0.4
864,963 + HMPREF1058_RS15655 0.37 +2.0
865,012 - HMPREF1058_RS15655 0.41 -2.8
865,015 - HMPREF1058_RS15655 0.41 -0.2
865,084 + HMPREF1058_RS15655 0.47 -0.9
865,084 + HMPREF1058_RS15655 0.47 -0.8
865,084 + HMPREF1058_RS15655 0.47 -0.2
865,084 + HMPREF1058_RS15655 0.47 -0.1
865,084 + HMPREF1058_RS15655 0.47 +1.1
865,085 - HMPREF1058_RS15655 0.47 -0.4
865,085 - HMPREF1058_RS15655 0.47 -0.6
865,472 + HMPREF1058_RS15655 0.81 -0.4
865,472 + HMPREF1058_RS15655 0.81 -0.9
865,472 + HMPREF1058_RS15655 0.81 -1.3
865,472 + HMPREF1058_RS15655 0.81 +0.4
865,473 - HMPREF1058_RS15655 0.81 +0.6
865,479 + HMPREF1058_RS15655 0.81 +0.3
865,480 - HMPREF1058_RS15655 0.82 -0.4
865,548 + HMPREF1058_RS15655 0.87 +0.8
865,548 + HMPREF1058_RS15655 0.87 +0.1
865,549 - HMPREF1058_RS15655 0.88 -0.0
865,628 + -0.9
865,651 + -0.8
865,652 - -0.3
865,652 - +0.4
865,665 + +1.4
865,665 + -1.2
865,666 - +1.8
865,704 + -1.1
865,709 - +0.1
865,716 - -2.3
865,762 + +2.0
865,780 + -0.3
865,781 - +0.9
866,034 + HMPREF1058_RS15650 0.18 -0.3
866,044 + HMPREF1058_RS15650 0.19 +1.0
866,099 + HMPREF1058_RS15650 0.22 -0.1
866,145 + HMPREF1058_RS15650 0.24 -1.7
866,146 - HMPREF1058_RS15650 0.24 -0.3
866,176 - HMPREF1058_RS15650 0.26 +1.4
866,203 + HMPREF1058_RS15650 0.28 +0.1
866,241 - HMPREF1058_RS15650 0.30 -0.3
866,376 - HMPREF1058_RS15650 0.38 +3.1
866,378 + HMPREF1058_RS15650 0.38 -0.8
866,378 + HMPREF1058_RS15650 0.38 +1.0
866,379 - HMPREF1058_RS15650 0.38 -0.7
866,466 - HMPREF1058_RS15650 0.43 -0.4
866,497 - HMPREF1058_RS15650 0.45 +0.8
866,645 + HMPREF1058_RS15650 0.53 -0.5
866,646 - HMPREF1058_RS15650 0.53 -0.3
866,646 - HMPREF1058_RS15650 0.53 -1.7

Or see this region's nucleotide sequence