Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15590 and HMPREF1058_RS15585 are separated by 8 nucleotides HMPREF1058_RS15585 and HMPREF1058_RS15580 are separated by 88 nucleotides
HMPREF1058_RS15590: HMPREF1058_RS15590 - putative porin, at 879,626 to 881,737
_RS15590
HMPREF1058_RS15585: HMPREF1058_RS15585 - transporter substrate-binding domain-containing protein, at 881,746 to 882,564
_RS15585
HMPREF1058_RS15580: HMPREF1058_RS15580 - Gfo/Idh/MocA family oxidoreductase, at 882,653 to 883,642
_RS15580
Position (kb) 881
882
883 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 881.743 kb on + strand at 881.755 kb on + strand at 881.905 kb on - strand, within HMPREF1058_RS15585 at 882.049 kb on + strand, within HMPREF1058_RS15585 at 882.049 kb on + strand, within HMPREF1058_RS15585 at 882.050 kb on - strand, within HMPREF1058_RS15585 at 882.050 kb on - strand, within HMPREF1058_RS15585 at 882.054 kb on + strand, within HMPREF1058_RS15585 at 882.054 kb on + strand, within HMPREF1058_RS15585 at 882.055 kb on - strand, within HMPREF1058_RS15585 at 882.121 kb on - strand, within HMPREF1058_RS15585 at 882.122 kb on + strand, within HMPREF1058_RS15585 at 882.151 kb on - strand, within HMPREF1058_RS15585 at 882.171 kb on + strand, within HMPREF1058_RS15585 at 882.251 kb on + strand, within HMPREF1058_RS15585 at 882.251 kb on + strand, within HMPREF1058_RS15585 at 882.261 kb on - strand, within HMPREF1058_RS15585 at 882.261 kb on - strand, within HMPREF1058_RS15585 at 882.286 kb on + strand, within HMPREF1058_RS15585 at 882.287 kb on - strand, within HMPREF1058_RS15585 at 882.287 kb on - strand, within HMPREF1058_RS15585 at 882.287 kb on - strand, within HMPREF1058_RS15585 at 882.324 kb on - strand, within HMPREF1058_RS15585 at 882.350 kb on + strand, within HMPREF1058_RS15585 at 882.350 kb on + strand, within HMPREF1058_RS15585 at 882.350 kb on + strand, within HMPREF1058_RS15585 at 882.351 kb on - strand, within HMPREF1058_RS15585 at 882.351 kb on - strand, within HMPREF1058_RS15585 at 882.351 kb on - strand, within HMPREF1058_RS15585 at 882.355 kb on + strand, within HMPREF1058_RS15585 at 882.446 kb on - strand, within HMPREF1058_RS15585 at 882.476 kb on + strand, within HMPREF1058_RS15585 at 882.511 kb on + strand at 882.590 kb on + strand at 882.591 kb on - strand at 882.597 kb on - strand at 882.672 kb on + strand at 882.844 kb on - strand, within HMPREF1058_RS15580 at 882.868 kb on + strand, within HMPREF1058_RS15580 at 882.868 kb on + strand, within HMPREF1058_RS15580 at 882.872 kb on + strand, within HMPREF1058_RS15580 at 882.873 kb on - strand, within HMPREF1058_RS15580 at 882.877 kb on - strand, within HMPREF1058_RS15580 at 883.035 kb on - strand, within HMPREF1058_RS15580 at 883.043 kb on + strand, within HMPREF1058_RS15580 at 883.052 kb on + strand, within HMPREF1058_RS15580 at 883.110 kb on + strand, within HMPREF1058_RS15580 at 883.111 kb on - strand, within HMPREF1058_RS15580 at 883.117 kb on - strand, within HMPREF1058_RS15580 at 883.177 kb on - strand, within HMPREF1058_RS15580 at 883.246 kb on + strand, within HMPREF1058_RS15580 at 883.300 kb on - strand, within HMPREF1058_RS15580 at 883.300 kb on - strand at 883.315 kb on + strand, within HMPREF1058_RS15580 at 883.474 kb on + strand, within HMPREF1058_RS15580 at 883.522 kb on - strand, within HMPREF1058_RS15580 at 883.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 881,743 + +1.0 881,755 + +2.5 881,905 - HMPREF1058_RS15585 0.19 +0.8 882,049 + HMPREF1058_RS15585 0.37 +1.4 882,049 + HMPREF1058_RS15585 0.37 +1.4 882,050 - HMPREF1058_RS15585 0.37 +1.2 882,050 - HMPREF1058_RS15585 0.37 +1.4 882,054 + HMPREF1058_RS15585 0.38 +0.5 882,054 + HMPREF1058_RS15585 0.38 +2.1 882,055 - HMPREF1058_RS15585 0.38 +1.6 882,121 - HMPREF1058_RS15585 0.46 +3.4 882,122 + HMPREF1058_RS15585 0.46 +2.6 882,151 - HMPREF1058_RS15585 0.49 +1.9 882,171 + HMPREF1058_RS15585 0.52 +3.3 882,251 + HMPREF1058_RS15585 0.62 +2.1 882,251 + HMPREF1058_RS15585 0.62 +1.7 882,261 - HMPREF1058_RS15585 0.63 +1.2 882,261 - HMPREF1058_RS15585 0.63 +1.4 882,286 + HMPREF1058_RS15585 0.66 +0.2 882,287 - HMPREF1058_RS15585 0.66 +4.0 882,287 - HMPREF1058_RS15585 0.66 +2.0 882,287 - HMPREF1058_RS15585 0.66 +0.6 882,324 - HMPREF1058_RS15585 0.71 +2.6 882,350 + HMPREF1058_RS15585 0.74 +0.6 882,350 + HMPREF1058_RS15585 0.74 +1.3 882,350 + HMPREF1058_RS15585 0.74 +1.5 882,351 - HMPREF1058_RS15585 0.74 +1.1 882,351 - HMPREF1058_RS15585 0.74 +2.4 882,351 - HMPREF1058_RS15585 0.74 -0.8 882,355 + HMPREF1058_RS15585 0.74 +0.8 882,446 - HMPREF1058_RS15585 0.85 +1.4 882,476 + HMPREF1058_RS15585 0.89 +2.4 882,511 + +0.8 882,590 + -1.1 882,591 - +2.2 882,597 - +2.5 882,672 + +0.4 882,844 - HMPREF1058_RS15580 0.19 +2.4 882,868 + HMPREF1058_RS15580 0.22 +0.3 882,868 + HMPREF1058_RS15580 0.22 -0.1 882,872 + HMPREF1058_RS15580 0.22 +1.4 882,873 - HMPREF1058_RS15580 0.22 +2.0 882,877 - HMPREF1058_RS15580 0.23 +1.0 883,035 - HMPREF1058_RS15580 0.39 +2.7 883,043 + HMPREF1058_RS15580 0.39 -1.2 883,052 + HMPREF1058_RS15580 0.40 +2.4 883,110 + HMPREF1058_RS15580 0.46 -0.7 883,111 - HMPREF1058_RS15580 0.46 +2.0 883,117 - HMPREF1058_RS15580 0.47 +0.9 883,177 - HMPREF1058_RS15580 0.53 +1.8 883,246 + HMPREF1058_RS15580 0.60 +0.8 883,300 - HMPREF1058_RS15580 0.65 -1.7 883,300 - +1.4 883,315 + HMPREF1058_RS15580 0.67 +0.6 883,474 + HMPREF1058_RS15580 0.83 -0.9 883,522 - HMPREF1058_RS15580 0.88 +1.4 883,548 + +0.2
Or see this region's nucleotide sequence