Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15165

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15170 and HMPREF1058_RS15165 are separated by 182 nucleotidesHMPREF1058_RS15165 and HMPREF1058_RS15160 are separated by 5 nucleotides HMPREF1058_RS15170: HMPREF1058_RS15170 - response regulator, at 987,584 to 991,534 _RS15170 HMPREF1058_RS15165: HMPREF1058_RS15165 - galactose mutarotase, at 991,717 to 992,850 _RS15165 HMPREF1058_RS15160: HMPREF1058_RS15160 - beta-galactosidase, at 992,856 to 994,670 _RS15160 Position (kb) 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 990.766 kb on - strand, within HMPREF1058_RS15170at 990.806 kb on - strand, within HMPREF1058_RS15170at 990.953 kb on + strand, within HMPREF1058_RS15170at 990.954 kb on - strand, within HMPREF1058_RS15170at 990.954 kb on - strand, within HMPREF1058_RS15170at 990.954 kb on - strand, within HMPREF1058_RS15170at 990.967 kb on - strand, within HMPREF1058_RS15170at 991.037 kb on - strand, within HMPREF1058_RS15170at 991.054 kb on + strand, within HMPREF1058_RS15170at 991.117 kb on + strand, within HMPREF1058_RS15170at 991.117 kb on + strand, within HMPREF1058_RS15170at 991.117 kb on + strand, within HMPREF1058_RS15170at 991.118 kb on - strand, within HMPREF1058_RS15170at 991.118 kb on - strand, within HMPREF1058_RS15170at 991.118 kb on - strand, within HMPREF1058_RS15170at 991.221 kb on + strandat 991.222 kb on - strandat 991.228 kb on - strandat 991.515 kb on - strandat 991.535 kb on - strandat 991.535 kb on - strandat 991.537 kb on + strandat 991.537 kb on + strandat 991.538 kb on - strandat 991.538 kb on - strandat 991.686 kb on + strandat 991.686 kb on + strandat 991.686 kb on + strandat 991.687 kb on - strandat 991.714 kb on - strandat 991.718 kb on + strandat 991.719 kb on - strandat 991.719 kb on - strandat 991.719 kb on - strandat 991.719 kb on - strandat 991.803 kb on + strandat 991.804 kb on - strandat 991.817 kb on + strandat 991.855 kb on - strand, within HMPREF1058_RS15165at 991.857 kb on - strand, within HMPREF1058_RS15165at 991.858 kb on + strand, within HMPREF1058_RS15165at 991.864 kb on - strand, within HMPREF1058_RS15165at 991.935 kb on - strand, within HMPREF1058_RS15165at 991.946 kb on - strand, within HMPREF1058_RS15165at 992.044 kb on + strand, within HMPREF1058_RS15165at 992.168 kb on + strand, within HMPREF1058_RS15165at 992.192 kb on + strand, within HMPREF1058_RS15165at 992.193 kb on - strand, within HMPREF1058_RS15165at 992.202 kb on + strand, within HMPREF1058_RS15165at 992.235 kb on - strand, within HMPREF1058_RS15165at 992.293 kb on - strand, within HMPREF1058_RS15165at 992.332 kb on - strand, within HMPREF1058_RS15165at 992.379 kb on - strand, within HMPREF1058_RS15165at 992.413 kb on - strand, within HMPREF1058_RS15165at 992.424 kb on + strand, within HMPREF1058_RS15165at 992.468 kb on + strand, within HMPREF1058_RS15165at 992.468 kb on + strand, within HMPREF1058_RS15165at 992.468 kb on + strand, within HMPREF1058_RS15165at 992.490 kb on - strand, within HMPREF1058_RS15165at 992.490 kb on - strand, within HMPREF1058_RS15165at 992.491 kb on + strand, within HMPREF1058_RS15165at 992.492 kb on - strand, within HMPREF1058_RS15165at 992.525 kb on - strand, within HMPREF1058_RS15165at 992.526 kb on + strand, within HMPREF1058_RS15165at 992.547 kb on + strand, within HMPREF1058_RS15165at 992.577 kb on + strand, within HMPREF1058_RS15165at 992.579 kb on + strand, within HMPREF1058_RS15165at 992.580 kb on - strand, within HMPREF1058_RS15165at 992.608 kb on + strand, within HMPREF1058_RS15165at 992.608 kb on + strand, within HMPREF1058_RS15165at 992.656 kb on - strand, within HMPREF1058_RS15165at 992.666 kb on + strand, within HMPREF1058_RS15165at 992.667 kb on - strand, within HMPREF1058_RS15165at 992.676 kb on + strand, within HMPREF1058_RS15165at 992.691 kb on + strand, within HMPREF1058_RS15165at 992.691 kb on + strand, within HMPREF1058_RS15165at 992.708 kb on - strand, within HMPREF1058_RS15165at 992.734 kb on + strand, within HMPREF1058_RS15165at 992.828 kb on - strandat 992.845 kb on - strandat 992.871 kb on - strandat 992.981 kb on - strandat 993.029 kb on + strandat 993.030 kb on - strandat 993.037 kb on - strandat 993.075 kb on + strand, within HMPREF1058_RS15160at 993.075 kb on + strand, within HMPREF1058_RS15160at 993.076 kb on - strand, within HMPREF1058_RS15160at 993.173 kb on - strand, within HMPREF1058_RS15160at 993.173 kb on - strand, within HMPREF1058_RS15160at 993.178 kb on + strand, within HMPREF1058_RS15160at 993.201 kb on - strand, within HMPREF1058_RS15160at 993.227 kb on + strand, within HMPREF1058_RS15160at 993.228 kb on - strand, within HMPREF1058_RS15160at 993.230 kb on - strand, within HMPREF1058_RS15160at 993.274 kb on + strand, within HMPREF1058_RS15160at 993.506 kb on + strand, within HMPREF1058_RS15160at 993.610 kb on - strand, within HMPREF1058_RS15160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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990,766 - HMPREF1058_RS15170 0.81 -0.5
990,806 - HMPREF1058_RS15170 0.82 -0.3
990,953 + HMPREF1058_RS15170 0.85 -0.8
990,954 - HMPREF1058_RS15170 0.85 -0.3
990,954 - HMPREF1058_RS15170 0.85 -0.3
990,954 - HMPREF1058_RS15170 0.85 -0.3
990,967 - HMPREF1058_RS15170 0.86 -2.0
991,037 - HMPREF1058_RS15170 0.87 +3.1
991,054 + HMPREF1058_RS15170 0.88 -1.1
991,117 + HMPREF1058_RS15170 0.89 -0.1
991,117 + HMPREF1058_RS15170 0.89 +0.7
991,117 + HMPREF1058_RS15170 0.89 +1.7
991,118 - HMPREF1058_RS15170 0.89 +0.8
991,118 - HMPREF1058_RS15170 0.89 -0.3
991,118 - HMPREF1058_RS15170 0.89 -0.6
991,221 + -2.4
991,222 - +0.3
991,228 - -2.2
991,515 - -3.0
991,535 - +1.1
991,535 - -0.4
991,537 + -1.1
991,537 + -1.1
991,538 - +1.4
991,538 - -0.5
991,686 + +0.5
991,686 + -0.0
991,686 + -1.2
991,687 - -1.5
991,714 - -0.5
991,718 + -0.7
991,719 - +1.7
991,719 - +0.4
991,719 - +1.7
991,719 - -0.1
991,803 + +0.3
991,804 - +1.4
991,817 + -0.6
991,855 - HMPREF1058_RS15165 0.12 -2.0
991,857 - HMPREF1058_RS15165 0.12 -0.1
991,858 + HMPREF1058_RS15165 0.12 -0.7
991,864 - HMPREF1058_RS15165 0.13 +0.6
991,935 - HMPREF1058_RS15165 0.19 +0.3
991,946 - HMPREF1058_RS15165 0.20 -1.3
992,044 + HMPREF1058_RS15165 0.29 +1.4
992,168 + HMPREF1058_RS15165 0.40 -1.8
992,192 + HMPREF1058_RS15165 0.42 +5.3
992,193 - HMPREF1058_RS15165 0.42 -2.4
992,202 + HMPREF1058_RS15165 0.43 -0.7
992,235 - HMPREF1058_RS15165 0.46 -1.9
992,293 - HMPREF1058_RS15165 0.51 +2.1
992,332 - HMPREF1058_RS15165 0.54 -0.8
992,379 - HMPREF1058_RS15165 0.58 +0.9
992,413 - HMPREF1058_RS15165 0.61 -1.2
992,424 + HMPREF1058_RS15165 0.62 +0.5
992,468 + HMPREF1058_RS15165 0.66 -1.9
992,468 + HMPREF1058_RS15165 0.66 -0.2
992,468 + HMPREF1058_RS15165 0.66 -0.7
992,490 - HMPREF1058_RS15165 0.68 -0.2
992,490 - HMPREF1058_RS15165 0.68 +0.2
992,491 + HMPREF1058_RS15165 0.68 +0.7
992,492 - HMPREF1058_RS15165 0.68 +0.5
992,525 - HMPREF1058_RS15165 0.71 +1.3
992,526 + HMPREF1058_RS15165 0.71 -1.3
992,547 + HMPREF1058_RS15165 0.73 -1.6
992,577 + HMPREF1058_RS15165 0.76 -0.6
992,579 + HMPREF1058_RS15165 0.76 -1.2
992,580 - HMPREF1058_RS15165 0.76 -0.8
992,608 + HMPREF1058_RS15165 0.79 +2.1
992,608 + HMPREF1058_RS15165 0.79 -2.0
992,656 - HMPREF1058_RS15165 0.83 -2.7
992,666 + HMPREF1058_RS15165 0.84 +0.6
992,667 - HMPREF1058_RS15165 0.84 -0.5
992,676 + HMPREF1058_RS15165 0.85 -0.7
992,691 + HMPREF1058_RS15165 0.86 -0.1
992,691 + HMPREF1058_RS15165 0.86 -1.0
992,708 - HMPREF1058_RS15165 0.87 +2.9
992,734 + HMPREF1058_RS15165 0.90 +1.5
992,828 - -0.8
992,845 - +1.5
992,871 - +0.2
992,981 - -0.2
993,029 + -1.9
993,030 - -1.3
993,037 - +0.8
993,075 + HMPREF1058_RS15160 0.12 -0.7
993,075 + HMPREF1058_RS15160 0.12 -2.4
993,076 - HMPREF1058_RS15160 0.12 +0.4
993,173 - HMPREF1058_RS15160 0.17 +0.3
993,173 - HMPREF1058_RS15160 0.17 -0.5
993,178 + HMPREF1058_RS15160 0.18 -0.5
993,201 - HMPREF1058_RS15160 0.19 -1.7
993,227 + HMPREF1058_RS15160 0.20 +0.7
993,228 - HMPREF1058_RS15160 0.20 +0.0
993,230 - HMPREF1058_RS15160 0.21 -0.0
993,274 + HMPREF1058_RS15160 0.23 -1.1
993,506 + HMPREF1058_RS15160 0.36 +3.4
993,610 - HMPREF1058_RS15160 0.42 -0.1

Or see this region's nucleotide sequence