Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08560

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
1,110,541	+		HMPREF1058_RS08565	0.69	-1.7
1,110,680	+		HMPREF1058_RS08565	0.74	-0.1
1,110,681	-		HMPREF1058_RS08565	0.74	-0.5
1,110,715	+		HMPREF1058_RS08565	0.75	+0.6
1,110,716	-		HMPREF1058_RS08565	0.75	+0.7
1,110,717	+		HMPREF1058_RS08565	0.75	+0.1
1,110,717	+		HMPREF1058_RS08565	0.75	+1.4
1,110,719	+		HMPREF1058_RS08565	0.75	-2.4
1,110,719	+		HMPREF1058_RS08565	0.75	-0.1
1,110,719	+		HMPREF1058_RS08565	0.75	-0.5
1,110,719	+		HMPREF1058_RS08565	0.75	+0.7
1,110,720	-		HMPREF1058_RS08565	0.75	+0.5
1,110,720	-		HMPREF1058_RS08565	0.75	+0.4
1,110,720	-		HMPREF1058_RS08565	0.75	+0.4
1,110,721	+		HMPREF1058_RS08565	0.75	-0.6
1,110,721	+		HMPREF1058_RS08565	0.75	-1.6
1,110,722	-		HMPREF1058_RS08565	0.75	+0.8
1,110,722	-		HMPREF1058_RS08565	0.75	-0.6
1,110,722	-		HMPREF1058_RS08565	0.75	-0.4
1,110,723	+		HMPREF1058_RS08565	0.75	-0.4
1,110,753	-		HMPREF1058_RS08565	0.76	-0.8
1,110,843	+		HMPREF1058_RS08565	0.79	-0.2
1,110,844	-		HMPREF1058_RS08565	0.79	+0.2
1,110,915	+		HMPREF1058_RS08565	0.82	-1.6
1,110,940	-		HMPREF1058_RS08565	0.82	+1.4
1,110,947	+		HMPREF1058_RS08565	0.83	-0.8
1,110,947	+		HMPREF1058_RS08565	0.83	-2.2
1,110,948	-		HMPREF1058_RS08565	0.83	+0.8
1,110,948	-		HMPREF1058_RS08565	0.83	-0.7
1,110,975	-		HMPREF1058_RS08565	0.83	-0.8
1,110,980	+		HMPREF1058_RS08565	0.84	-0.8
1,111,075	+		HMPREF1058_RS08565	0.87	-0.2
1,111,106	+		HMPREF1058_RS08565	0.88	+0.4
1,111,158	+		HMPREF1058_RS08565	0.89	-1.1
1,111,159	-		HMPREF1058_RS08565	0.90	+0.0
1,111,172	-				+0.8
1,111,172	-		HMPREF1058_RS08565	0.90	+0.6
1,111,307	+				-0.2
1,111,308	-				-1.6
1,111,308	-				+1.4
1,111,308	-				+1.4
1,111,318	-				-0.1
1,111,353	-				-0.4
1,111,353	-				-0.2
1,111,365	-				-1.3
1,111,386	-				-2.0
1,111,412	+				+0.2
1,111,424	-				-0.9
1,111,482	+				+0.1
1,111,525	+				+0.5
1,111,526	-				-1.8
1,111,526	-				-1.2
1,111,560	+				-0.7
1,111,560	+				+1.1
1,111,612	+				-0.3
1,111,613	-				+1.4
1,111,615	-				+0.8
1,111,617	-				-0.4
1,111,637	+				-1.9
1,111,638	-				-1.8
1,111,694	+		HMPREF1058_RS08560	0.11	+0.4
1,111,695	-		HMPREF1058_RS08560	0.11	+1.1
1,111,698	-		HMPREF1058_RS08560	0.11	-1.0
1,111,700	+		HMPREF1058_RS08560	0.11	+0.1
1,111,701	-		HMPREF1058_RS08560	0.11	-2.7
1,111,783	+		HMPREF1058_RS08560	0.15	-0.3
1,111,922	-		HMPREF1058_RS08560	0.23	-0.2
1,111,951	-		HMPREF1058_RS08560	0.24	-0.1
1,111,951	-		HMPREF1058_RS08560	0.24	-1.2
1,112,022	+		HMPREF1058_RS08560	0.28	-0.1
1,112,025	-		HMPREF1058_RS08560	0.28	-3.0
1,112,027	+		HMPREF1058_RS08560	0.28	-1.2
1,112,221	+		HMPREF1058_RS08560	0.39	-0.5
1,112,307	+		HMPREF1058_RS08560	0.44	-0.8
1,112,309	+		HMPREF1058_RS08560	0.44	+0.9
1,112,323	+		HMPREF1058_RS08560	0.44	+0.2
1,112,330	+		HMPREF1058_RS08560	0.45	-1.8
1,112,330	+		HMPREF1058_RS08560	0.45	+2.0
1,112,366	+		HMPREF1058_RS08560	0.47	-0.6
1,112,367	-		HMPREF1058_RS08560	0.47	-1.2
1,112,367	-		HMPREF1058_RS08560	0.47	-0.0
1,112,480	+		HMPREF1058_RS08560	0.53	+1.6
1,112,485	-		HMPREF1058_RS08560	0.53	+0.5
1,112,595	-		HMPREF1058_RS08560	0.59	-0.8
1,112,596	+		HMPREF1058_RS08560	0.59	-0.6
1,112,619	-		HMPREF1058_RS08560	0.60	+2.9
1,112,636	+		HMPREF1058_RS08560	0.61	+0.7
1,112,636	+		HMPREF1058_RS08560	0.61	-1.2
1,112,657	-		HMPREF1058_RS08560	0.62	-0.4
1,112,691	-		HMPREF1058_RS08560	0.64	+0.0
1,112,814	+		HMPREF1058_RS08560	0.71	-0.8
1,112,914	-		HMPREF1058_RS08560	0.76	+0.0
1,112,914	-		HMPREF1058_RS08560	0.76	+0.2
1,112,917	-		HMPREF1058_RS08560	0.76	-1.9
1,113,052	+		HMPREF1058_RS08560	0.84	-1.0
1,113,144	+		HMPREF1058_RS08560	0.89	-1.4
1,113,147	-		HMPREF1058_RS08560	0.89	+1.0
1,113,150	+		HMPREF1058_RS08560	0.89	-1.0
1,113,151	-		HMPREF1058_RS08560	0.89	-0.6
1,113,160	-		HMPREF1058_RS08560	0.89	-1.1
1,113,309	-				-1.0
1,113,309	-				+0.7
1,113,434	-				-1.6
1,113,446	-				-2.1
1,113,448	-				-0.5
1,113,462	-				+1.6
1,113,469	+				-0.6
1,113,470	-				-0.3
1,113,512	+				-0.9
1,113,513	-				-0.9
1,113,515	+				-2.4
1,113,630	-				-0.2
1,113,701	+				-0.8
1,113,708	-				+0.1
1,113,722	+				-0.5
1,113,722	+				-1.6
1,113,722	+				-1.0
1,113,722	+				-1.3
1,113,723	-				-1.3
1,113,725	-				+1.9
1,113,766	-				-1.4
1,113,788	+				-2.2
1,113,788	+				+0.1
1,113,788	+				-1.0
1,113,822	+				+0.8
1,113,822	+				+1.2
1,113,834	-				-0.7
1,113,845	+		HMPREF1058_RS08555	0.10	+1.1
1,113,846	-		HMPREF1058_RS08555	0.10	+0.5
1,113,847	+		HMPREF1058_RS08555	0.10	+0.7
1,113,848	-		HMPREF1058_RS08555	0.10	+0.1
1,113,848	-		HMPREF1058_RS08555	0.10	+0.0
1,113,849	+		HMPREF1058_RS08555	0.10	+0.1
1,113,850	-		HMPREF1058_RS08555	0.10	+1.3
1,113,854	+		HMPREF1058_RS08555	0.10	-0.3
1,113,855	-		HMPREF1058_RS08555	0.11	-1.2
1,113,855	-		HMPREF1058_RS08555	0.11	-1.0
1,113,855	-		HMPREF1058_RS08555	0.11	+0.9
1,113,855	-		HMPREF1058_RS08555	0.11	+0.3
1,113,856	+		HMPREF1058_RS08555	0.11	+0.7
1,113,857	-		HMPREF1058_RS08555	0.11	-2.0
1,113,857	-		HMPREF1058_RS08555	0.11	-2.1
1,113,857	-		HMPREF1058_RS08555	0.11	+1.2
1,113,865	-		HMPREF1058_RS08555	0.11	+0.8
1,113,913	+		HMPREF1058_RS08555	0.13	-1.0
1,113,945	+		HMPREF1058_RS08555	0.14	+1.4
1,113,953	-		HMPREF1058_RS08555	0.15	-0.1
1,113,981	+		HMPREF1058_RS08555	0.16	-1.3
1,113,983	+		HMPREF1058_RS08555	0.16	+0.9
1,113,983	+		HMPREF1058_RS08555	0.16	-2.0
1,113,984	-		HMPREF1058_RS08555	0.16	-0.1
1,114,032	-		HMPREF1058_RS08555	0.18	-2.1
1,114,044	-		HMPREF1058_RS08555	0.18	-1.3
1,114,128	-		HMPREF1058_RS08555	0.22	+3.4
1,114,154	-		HMPREF1058_RS08555	0.23	-1.2
1,114,155	+		HMPREF1058_RS08555	0.23	+1.1
1,114,155	+		HMPREF1058_RS08555	0.23	-1.3
1,114,208	+		HMPREF1058_RS08555	0.25	-0.4
1,114,252	-		HMPREF1058_RS08555	0.27	-0.6
1,114,253	+		HMPREF1058_RS08555	0.27	+0.1
1,114,253	+		HMPREF1058_RS08555	0.27	-0.8
1,114,254	-		HMPREF1058_RS08555	0.27	-1.3
1,114,259	+		HMPREF1058_RS08555	0.27	-0.1
1,114,259	+		HMPREF1058_RS08555	0.27	+1.6
1,114,260	-		HMPREF1058_RS08555	0.27	+1.9
1,114,264	+		HMPREF1058_RS08555	0.28	+1.5
1,114,265	-		HMPREF1058_RS08555	0.28	-0.7
1,114,266	+		HMPREF1058_RS08555	0.28	-0.1
1,114,298	-		HMPREF1058_RS08555	0.29	-0.1
1,114,341	+		HMPREF1058_RS08555	0.31	+1.3
1,114,341	+		HMPREF1058_RS08555	0.31	+1.6