Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08205

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
9,328	+		HMPREF1058_RS08210	0.54	-1.6
9,331	-		HMPREF1058_RS08210	0.54	-0.6
9,335	-		HMPREF1058_RS08210	0.54	-1.6
9,338	+		HMPREF1058_RS08210	0.55	+2.2
9,338	+		HMPREF1058_RS08210	0.55	-1.0
9,361	-		HMPREF1058_RS08210	0.56	+0.1
9,375	+		HMPREF1058_RS08210	0.57	+2.4
9,381	+		HMPREF1058_RS08210	0.57	+1.0
9,414	+		HMPREF1058_RS08210	0.59	-1.5
9,416	+		HMPREF1058_RS08210	0.59	+0.4
9,531	+		HMPREF1058_RS08210	0.65	+1.6
9,531	+		HMPREF1058_RS08210	0.65	-0.4
9,532	-		HMPREF1058_RS08210	0.65	-0.4
9,532	-		HMPREF1058_RS08210	0.65	-1.0
9,559	-				+0.6
9,626	-		HMPREF1058_RS08210	0.70	-0.5
9,697	-		HMPREF1058_RS08210	0.74	+0.3
9,700	-		HMPREF1058_RS08210	0.74	+0.3
9,709	-		HMPREF1058_RS08210	0.75	+0.5
9,810	+		HMPREF1058_RS08210	0.80	+0.0
9,824	+		HMPREF1058_RS08210	0.81	-1.3
9,825	-		HMPREF1058_RS08210	0.81	-0.7
9,825	-		HMPREF1058_RS08210	0.81	+2.6
9,826	+		HMPREF1058_RS08210	0.81	+0.2
9,826	+		HMPREF1058_RS08210	0.81	+1.6
9,827	-		HMPREF1058_RS08210	0.81	-0.9
9,829	+		HMPREF1058_RS08210	0.81	-0.8
9,832	-		HMPREF1058_RS08210	0.82	-1.3
9,834	-		HMPREF1058_RS08210	0.82	-1.3
9,834	-		HMPREF1058_RS08210	0.82	+0.4
9,834	-		HMPREF1058_RS08210	0.82	-1.7
9,861	+		HMPREF1058_RS08210	0.83	-0.7
9,903	+		HMPREF1058_RS08210	0.85	-0.7
9,904	-		HMPREF1058_RS08210	0.86	-1.6
9,904	-		HMPREF1058_RS08210	0.86	-1.2
9,904	-		HMPREF1058_RS08210	0.86	+0.6
9,917	+		HMPREF1058_RS08210	0.86	+1.0
9,917	+		HMPREF1058_RS08210	0.86	+1.7
9,918	-		HMPREF1058_RS08210	0.86	-2.6
9,918	-		HMPREF1058_RS08210	0.86	-1.2
10,033	-				-1.6
10,085	-				-2.3
10,085	-				-1.2
10,108	-				+1.4
10,120	-				+3.6
10,165	+				-0.2
10,174	+				-0.9
10,180	-				+1.6
10,183	-				-0.6
10,186	-				-1.2
10,188	-				-0.3
10,188	-				-1.1
10,191	-				-0.6
10,225	+				-1.4
10,227	+				-0.6
10,230	+				-0.1
10,231	-				+1.0
10,260	+				+0.8
10,274	+				+0.0
10,275	-				-0.4
10,282	-				-0.6
10,290	-				+0.0
10,305	-				+1.7
10,308	+				+2.2
10,308	+				+1.2
10,315	+				-0.4
10,331	+				-1.0
10,331	+				-2.1
10,332	-				+1.2
10,333	+				-1.1
10,334	-				-0.5
10,335	+				+2.2
10,335	+				+0.0
10,341	+				-0.5
10,354	-				-0.8
10,420	+				+2.6
10,516	+		HMPREF1058_RS08205	0.10	-0.4
10,517	-		HMPREF1058_RS08205	0.10	-0.7
10,517	-		HMPREF1058_RS08205	0.10	+0.1
10,540	-		HMPREF1058_RS08205	0.11	+1.1
10,584	+		HMPREF1058_RS08205	0.14	+0.9
10,584	+		HMPREF1058_RS08205	0.14	-0.9
10,584	+		HMPREF1058_RS08205	0.14	+1.0
10,584	+		HMPREF1058_RS08205	0.14	+0.8
10,584	+		HMPREF1058_RS08205	0.14	-0.4
10,585	-		HMPREF1058_RS08205	0.14	+0.6
10,585	-		HMPREF1058_RS08205	0.14	-2.2
10,585	-		HMPREF1058_RS08205	0.14	-0.2
10,598	-		HMPREF1058_RS08205	0.14	-0.3
10,598	-				+1.0
10,606	-		HMPREF1058_RS08205	0.15	+0.4
10,678	-		HMPREF1058_RS08205	0.19	+2.3
10,678	-		HMPREF1058_RS08205	0.19	-0.1
10,686	-		HMPREF1058_RS08205	0.19	+1.2
10,763	-		HMPREF1058_RS08205	0.23	-0.1
10,889	+		HMPREF1058_RS08205	0.29	-0.7
10,889	+		HMPREF1058_RS08205	0.29	-1.7
10,893	+		HMPREF1058_RS08205	0.30	-0.7
10,894	-		HMPREF1058_RS08205	0.30	-0.5
10,922	+		HMPREF1058_RS08205	0.31	+0.5
10,922	+		HMPREF1058_RS08205	0.31	-1.4
10,923	-		HMPREF1058_RS08205	0.31	-0.3
10,982	+		HMPREF1058_RS08205	0.34	-0.1
10,999	+		HMPREF1058_RS08205	0.35	-1.2
11,000	-		HMPREF1058_RS08205	0.35	+0.6
11,014	+		HMPREF1058_RS08205	0.36	-0.7
11,033	-		HMPREF1058_RS08205	0.37	-1.4
11,045	-				+1.6
11,059	-		HMPREF1058_RS08205	0.38	+0.8
11,101	+		HMPREF1058_RS08205	0.40	+0.8
11,113	+		HMPREF1058_RS08205	0.41	+0.3
11,214	-		HMPREF1058_RS08205	0.46	-1.3
11,269	+		HMPREF1058_RS08205	0.49	-1.6
11,269	+		HMPREF1058_RS08205	0.49	+0.3
11,270	-		HMPREF1058_RS08205	0.49	-0.6
11,283	+		HMPREF1058_RS08205	0.50	+0.0
11,293	+		HMPREF1058_RS08205	0.50	-1.3
11,358	+		HMPREF1058_RS08205	0.54	-1.9
11,359	-		HMPREF1058_RS08205	0.54	-0.4
11,359	-		HMPREF1058_RS08205	0.54	-0.6
11,392	-		HMPREF1058_RS08205	0.55	-0.8
11,392	-		HMPREF1058_RS08205	0.55	-1.4
11,481	+		HMPREF1058_RS08205	0.60	-0.5
11,481	+		HMPREF1058_RS08205	0.60	+0.5
11,482	-		HMPREF1058_RS08205	0.60	+1.4
11,482	-		HMPREF1058_RS08205	0.60	-0.7
11,578	+		HMPREF1058_RS08205	0.65	+2.4
11,578	+		HMPREF1058_RS08205	0.65	+2.6
11,578	+		HMPREF1058_RS08205	0.65	+0.3
11,645	-		HMPREF1058_RS08205	0.69	+0.0
11,645	-		HMPREF1058_RS08205	0.69	+0.1
11,650	+		HMPREF1058_RS08205	0.69	-0.2
11,691	-		HMPREF1058_RS08205	0.71	-0.3
11,692	+		HMPREF1058_RS08205	0.71	+0.6
11,743	+		HMPREF1058_RS08205	0.74	-1.1
11,743	+		HMPREF1058_RS08205	0.74	+1.5
11,764	+		HMPREF1058_RS08205	0.75	-2.5
11,832	-		HMPREF1058_RS08205	0.78	+0.6
11,834	-		HMPREF1058_RS08205	0.78	+0.1
11,837	+		HMPREF1058_RS08205	0.78	-0.9
11,837	+		HMPREF1058_RS08205	0.78	+1.9
11,837	+		HMPREF1058_RS08205	0.78	-1.5
11,837	+		HMPREF1058_RS08205	0.78	+0.4
11,837	+		HMPREF1058_RS08205	0.78	+1.6
11,838	-		HMPREF1058_RS08205	0.79	-1.2
11,838	-		HMPREF1058_RS08205	0.79	-2.2
11,843	+				+2.2
11,848	+		HMPREF1058_RS08205	0.79	+0.6
11,898	+		HMPREF1058_RS08205	0.82	-0.3
11,898	+		HMPREF1058_RS08205	0.82	-1.3
11,899	-		HMPREF1058_RS08205	0.82	-0.7
11,902	+		HMPREF1058_RS08205	0.82	-1.7
11,954	-		HMPREF1058_RS08205	0.84	-0.7
11,956	+		HMPREF1058_RS08205	0.85	-0.1
11,957	-		HMPREF1058_RS08205	0.85	-1.3
12,021	+		HMPREF1058_RS08205	0.88	+1.7
12,021	+		HMPREF1058_RS08205	0.88	+0.9
12,059	+		HMPREF1058_RS08205	0.90	+1.3
12,060	-				+0.4
12,106	+				+1.1
12,124	+				-1.2
12,233	+				-0.2
12,311	+				+0.1
12,312	-				-0.4
12,356	+				-1.6
12,626	+		HMPREF1058_RS08200	0.11	-0.4
12,706	-		HMPREF1058_RS08200	0.13	+1.6
12,732	+		HMPREF1058_RS08200	0.14	+1.0
12,736	+		HMPREF1058_RS08200	0.14	+2.6
12,737	-		HMPREF1058_RS08200	0.14	+0.3
12,775	-		HMPREF1058_RS08200	0.15	-0.5
12,775	-		HMPREF1058_RS08200	0.15	-0.6
12,825	+		HMPREF1058_RS08200	0.17	+0.2
12,872	-		HMPREF1058_RS08200	0.18	+0.0
12,872	-		HMPREF1058_RS08200	0.18	+0.2
12,912	+		HMPREF1058_RS08200	0.19	+1.6
12,932	-		HMPREF1058_RS08200	0.20	+0.9
12,968	-		HMPREF1058_RS08200	0.21	+0.8
12,993	-		HMPREF1058_RS08200	0.22	+1.6
13,021	-		HMPREF1058_RS08200	0.23	+0.7
13,021	-		HMPREF1058_RS08200	0.23	+1.0
13,034	+		HMPREF1058_RS08200	0.23	-1.2
13,035	-		HMPREF1058_RS08200	0.23	-1.5
13,087	+		HMPREF1058_RS08200	0.24	+3.2
13,088	-		HMPREF1058_RS08200	0.24	+1.9
13,152	+		HMPREF1058_RS08200	0.26	-0.9
13,152	+		HMPREF1058_RS08200	0.26	+1.4
13,152	+		HMPREF1058_RS08200	0.26	-0.6
13,153	-		HMPREF1058_RS08200	0.26	+0.3
13,153	-		HMPREF1058_RS08200	0.26	-1.1
13,234	+		HMPREF1058_RS08200	0.29	-0.6
13,235	-		HMPREF1058_RS08200	0.29	-0.6
13,235	-		HMPREF1058_RS08200	0.29	-0.4
13,235	-		HMPREF1058_RS08200	0.29	-2.5
13,237	-		HMPREF1058_RS08200	0.29	+2.0
13,237	-		HMPREF1058_RS08200	0.29	-1.9
13,237	-		HMPREF1058_RS08200	0.29	-1.5