Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06695

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06700 and HMPREF1058_RS06695 are separated by 7 nucleotidesHMPREF1058_RS06695 and HMPREF1058_RS06690 overlap by 4 nucleotidesHMPREF1058_RS06690 and HMPREF1058_RS06685 overlap by 20 nucleotides HMPREF1058_RS06700: HMPREF1058_RS06700 - glycosyltransferase family 2 protein, at 415,076 to 416,236 _RS06700 HMPREF1058_RS06695: HMPREF1058_RS06695 - glycosyltransferase, at 416,244 to 417,368 _RS06695 HMPREF1058_RS06690: HMPREF1058_RS06690 - glycosyltransferase family 2 protein, at 417,365 to 418,270 _RS06690 HMPREF1058_RS06685: HMPREF1058_RS06685 - O-antigen ligase family protein, at 418,251 to 419,711 _RS06685 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 415.402 kb on + strand, within HMPREF1058_RS06700at 415.514 kb on - strand, within HMPREF1058_RS06700at 415.515 kb on + strand, within HMPREF1058_RS06700at 415.515 kb on + strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.516 kb on - strand, within HMPREF1058_RS06700at 415.770 kb on - strand, within HMPREF1058_RS06700at 415.770 kb on - strand, within HMPREF1058_RS06700at 415.839 kb on - strand, within HMPREF1058_RS06700at 415.854 kb on + strand, within HMPREF1058_RS06700at 415.929 kb on - strand, within HMPREF1058_RS06700at 415.995 kb on - strand, within HMPREF1058_RS06700at 416.092 kb on + strand, within HMPREF1058_RS06700at 416.165 kb on + strandat 416.165 kb on + strandat 416.166 kb on - strandat 416.166 kb on - strandat 416.167 kb on + strandat 416.168 kb on - strandat 416.169 kb on + strandat 416.194 kb on + strandat 416.194 kb on + strandat 416.195 kb on - strandat 416.196 kb on + strandat 416.196 kb on + strandat 416.196 kb on + strandat 416.197 kb on - strandat 416.197 kb on - strandat 416.199 kb on - strandat 416.203 kb on + strandat 416.204 kb on - strandat 416.204 kb on - strandat 416.204 kb on - strandat 416.216 kb on - strandat 416.219 kb on + strandat 416.220 kb on - strandat 416.338 kb on + strandat 416.422 kb on - strand, within HMPREF1058_RS06695at 416.454 kb on + strand, within HMPREF1058_RS06695at 416.566 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.588 kb on + strand, within HMPREF1058_RS06695at 416.589 kb on - strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.634 kb on + strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.635 kb on - strand, within HMPREF1058_RS06695at 416.643 kb on - strand, within HMPREF1058_RS06695at 416.646 kb on - strand, within HMPREF1058_RS06695at 416.650 kb on - strand, within HMPREF1058_RS06695at 416.663 kb on - strand, within HMPREF1058_RS06695at 416.664 kb on + strand, within HMPREF1058_RS06695at 416.665 kb on - strand, within HMPREF1058_RS06695at 416.920 kb on + strand, within HMPREF1058_RS06695at 416.921 kb on - strand, within HMPREF1058_RS06695at 417.152 kb on + strand, within HMPREF1058_RS06695at 417.188 kb on - strand, within HMPREF1058_RS06695at 417.192 kb on + strand, within HMPREF1058_RS06695at 417.244 kb on - strand, within HMPREF1058_RS06695at 417.318 kb on - strandat 417.340 kb on - strandat 417.349 kb on - strandat 417.357 kb on + strandat 417.480 kb on - strand, within HMPREF1058_RS06690at 417.545 kb on + strand, within HMPREF1058_RS06690at 417.545 kb on + strand, within HMPREF1058_RS06690at 417.546 kb on - strand, within HMPREF1058_RS06690at 417.546 kb on - strand, within HMPREF1058_RS06690at 417.549 kb on - strandat 417.574 kb on - strand, within HMPREF1058_RS06690at 417.644 kb on + strand, within HMPREF1058_RS06690at 417.669 kb on + strand, within HMPREF1058_RS06690at 417.670 kb on - strand, within HMPREF1058_RS06690at 417.697 kb on - strand, within HMPREF1058_RS06690at 417.724 kb on + strand, within HMPREF1058_RS06690at 417.737 kb on + strand, within HMPREF1058_RS06690at 417.806 kb on - strand, within HMPREF1058_RS06690at 417.878 kb on + strand, within HMPREF1058_RS06690at 417.954 kb on - strand, within HMPREF1058_RS06690at 417.982 kb on + strand, within HMPREF1058_RS06690at 417.983 kb on - strand, within HMPREF1058_RS06690at 418.031 kb on + strand, within HMPREF1058_RS06690at 418.046 kb on - strand, within HMPREF1058_RS06690at 418.080 kb on - strand, within HMPREF1058_RS06690at 418.161 kb on + strand, within HMPREF1058_RS06690at 418.272 kb on + strandat 418.272 kb on + strandat 418.330 kb on + strandat 418.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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415,402 + HMPREF1058_RS06700 0.28 +0.7
415,514 - HMPREF1058_RS06700 0.38 +0.2
415,515 + HMPREF1058_RS06700 0.38 +0.5
415,515 + HMPREF1058_RS06700 0.38 -1.2
415,516 - HMPREF1058_RS06700 0.38 +2.6
415,516 - HMPREF1058_RS06700 0.38 +1.1
415,516 - HMPREF1058_RS06700 0.38 +0.3
415,770 - HMPREF1058_RS06700 0.60 +2.2
415,770 - HMPREF1058_RS06700 0.60 +1.0
415,839 - HMPREF1058_RS06700 0.66 +1.3
415,854 + HMPREF1058_RS06700 0.67 -0.9
415,929 - HMPREF1058_RS06700 0.73 +2.3
415,995 - HMPREF1058_RS06700 0.79 +0.6
416,092 + HMPREF1058_RS06700 0.88 -2.0
416,165 + -0.7
416,165 + +0.8
416,166 - -0.3
416,166 - +2.1
416,167 + +3.5
416,168 - -1.7
416,169 + -1.3
416,194 + -1.8
416,194 + +1.0
416,195 - +0.4
416,196 + +1.4
416,196 + -0.7
416,196 + -1.0
416,197 - +1.1
416,197 - -1.1
416,199 - -0.9
416,203 + -1.5
416,204 - -0.9
416,204 - +0.2
416,204 - -0.3
416,216 - -2.0
416,219 + +0.1
416,220 - +0.2
416,338 + -2.6
416,422 - HMPREF1058_RS06695 0.16 +1.0
416,454 + HMPREF1058_RS06695 0.19 -1.0
416,566 + HMPREF1058_RS06695 0.29 +2.6
416,588 + HMPREF1058_RS06695 0.31 -0.6
416,588 + HMPREF1058_RS06695 0.31 +0.9
416,588 + HMPREF1058_RS06695 0.31 -0.1
416,589 - HMPREF1058_RS06695 0.31 +1.5
416,634 + HMPREF1058_RS06695 0.35 +1.8
416,634 + HMPREF1058_RS06695 0.35 -0.8
416,634 + HMPREF1058_RS06695 0.35 -2.5
416,634 + HMPREF1058_RS06695 0.35 -0.3
416,635 - HMPREF1058_RS06695 0.35 +1.2
416,635 - HMPREF1058_RS06695 0.35 +1.2
416,635 - HMPREF1058_RS06695 0.35 -0.6
416,635 - HMPREF1058_RS06695 0.35 +0.6
416,635 - HMPREF1058_RS06695 0.35 +0.8
416,635 - HMPREF1058_RS06695 0.35 +0.2
416,643 - HMPREF1058_RS06695 0.35 +2.5
416,646 - HMPREF1058_RS06695 0.36 +2.4
416,650 - HMPREF1058_RS06695 0.36 +5.9
416,663 - HMPREF1058_RS06695 0.37 +0.2
416,664 + HMPREF1058_RS06695 0.37 +2.1
416,665 - HMPREF1058_RS06695 0.37 +2.1
416,920 + HMPREF1058_RS06695 0.60 +4.3
416,921 - HMPREF1058_RS06695 0.60 -1.5
417,152 + HMPREF1058_RS06695 0.81 +0.5
417,188 - HMPREF1058_RS06695 0.84 +3.3
417,192 + HMPREF1058_RS06695 0.84 -0.2
417,244 - HMPREF1058_RS06695 0.89 +4.0
417,318 - +1.6
417,340 - +0.8
417,349 - +0.5
417,357 + -0.7
417,480 - HMPREF1058_RS06690 0.13 +0.0
417,545 + HMPREF1058_RS06690 0.20 -2.3
417,545 + HMPREF1058_RS06690 0.20 -0.9
417,546 - HMPREF1058_RS06690 0.20 -0.5
417,546 - HMPREF1058_RS06690 0.20 -0.5
417,549 - +2.5
417,574 - HMPREF1058_RS06690 0.23 -0.1
417,644 + HMPREF1058_RS06690 0.31 +1.0
417,669 + HMPREF1058_RS06690 0.34 +0.2
417,670 - HMPREF1058_RS06690 0.34 -0.9
417,697 - HMPREF1058_RS06690 0.37 +1.7
417,724 + HMPREF1058_RS06690 0.40 -0.7
417,737 + HMPREF1058_RS06690 0.41 +3.3
417,806 - HMPREF1058_RS06690 0.49 +2.4
417,878 + HMPREF1058_RS06690 0.57 +2.1
417,954 - HMPREF1058_RS06690 0.65 +1.5
417,982 + HMPREF1058_RS06690 0.68 +0.1
417,983 - HMPREF1058_RS06690 0.68 -2.5
418,031 + HMPREF1058_RS06690 0.74 -1.3
418,046 - HMPREF1058_RS06690 0.75 +0.4
418,080 - HMPREF1058_RS06690 0.79 -1.4
418,161 + HMPREF1058_RS06690 0.88 +1.9
418,272 + +3.1
418,272 + +0.5
418,330 + +0.5
418,360 + -0.1

Or see this region's nucleotide sequence