Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05395

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05400 and HMPREF1058_RS05395 are separated by 27 nucleotidesHMPREF1058_RS05395 and HMPREF1058_RS05390 are separated by 16 nucleotidesHMPREF1058_RS05390 and HMPREF1058_RS05385 are separated by 52 nucleotides HMPREF1058_RS05400: HMPREF1058_RS05400 - cation:proton antiporter, at 172,226 to 174,472 _RS05400 HMPREF1058_RS05395: HMPREF1058_RS05395 - alpha-glucan family phosphorylase, at 174,500 to 177,058 _RS05395 HMPREF1058_RS05390: HMPREF1058_RS05390 - arginase family protein, at 177,075 to 177,884 _RS05390 HMPREF1058_RS05385: HMPREF1058_RS05385 - methylglyoxal synthase, at 177,937 to 178,473 _RS05385 Position (kb) 174 175 176 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 173.547 kb on - strand, within HMPREF1058_RS05400at 173.555 kb on + strand, within HMPREF1058_RS05400at 173.559 kb on + strand, within HMPREF1058_RS05400at 173.559 kb on + strand, within HMPREF1058_RS05400at 173.736 kb on + strand, within HMPREF1058_RS05400at 173.737 kb on - strand, within HMPREF1058_RS05400at 173.739 kb on + strand, within HMPREF1058_RS05400at 173.739 kb on + strand, within HMPREF1058_RS05400at 173.739 kb on + strand, within HMPREF1058_RS05400at 173.740 kb on - strand, within HMPREF1058_RS05400at 173.740 kb on - strand, within HMPREF1058_RS05400at 173.824 kb on - strand, within HMPREF1058_RS05400at 173.902 kb on + strand, within HMPREF1058_RS05400at 174.033 kb on - strand, within HMPREF1058_RS05400at 174.124 kb on - strand, within HMPREF1058_RS05400at 174.225 kb on + strand, within HMPREF1058_RS05400at 174.334 kb on - strandat 174.376 kb on + strandat 174.377 kb on - strandat 174.379 kb on + strandat 174.418 kb on + strandat 174.517 kb on + strandat 174.517 kb on + strandat 174.523 kb on - strandat 174.548 kb on - strandat 174.714 kb on - strandat 174.756 kb on - strand, within HMPREF1058_RS05395at 174.869 kb on - strand, within HMPREF1058_RS05395at 174.873 kb on + strand, within HMPREF1058_RS05395at 174.873 kb on + strand, within HMPREF1058_RS05395at 175.119 kb on + strand, within HMPREF1058_RS05395at 175.321 kb on - strand, within HMPREF1058_RS05395at 175.330 kb on + strand, within HMPREF1058_RS05395at 175.376 kb on + strand, within HMPREF1058_RS05395at 175.380 kb on + strand, within HMPREF1058_RS05395at 175.381 kb on - strand, within HMPREF1058_RS05395at 175.443 kb on + strand, within HMPREF1058_RS05395at 175.443 kb on + strand, within HMPREF1058_RS05395at 175.448 kb on - strand, within HMPREF1058_RS05395at 175.448 kb on - strandat 175.473 kb on - strand, within HMPREF1058_RS05395at 175.500 kb on - strand, within HMPREF1058_RS05395at 175.500 kb on - strand, within HMPREF1058_RS05395at 175.629 kb on + strand, within HMPREF1058_RS05395at 175.722 kb on - strand, within HMPREF1058_RS05395at 175.725 kb on + strand, within HMPREF1058_RS05395at 176.004 kb on + strand, within HMPREF1058_RS05395at 176.005 kb on - strand, within HMPREF1058_RS05395at 176.033 kb on + strand, within HMPREF1058_RS05395at 176.033 kb on + strand, within HMPREF1058_RS05395at 176.033 kb on + strand, within HMPREF1058_RS05395at 176.033 kb on + strand, within HMPREF1058_RS05395at 176.034 kb on - strand, within HMPREF1058_RS05395at 176.034 kb on - strand, within HMPREF1058_RS05395at 176.035 kb on + strand, within HMPREF1058_RS05395at 176.036 kb on - strand, within HMPREF1058_RS05395at 176.064 kb on + strand, within HMPREF1058_RS05395at 176.065 kb on - strand, within HMPREF1058_RS05395at 176.100 kb on - strand, within HMPREF1058_RS05395at 176.229 kb on - strand, within HMPREF1058_RS05395at 176.347 kb on + strand, within HMPREF1058_RS05395at 176.422 kb on + strand, within HMPREF1058_RS05395at 176.423 kb on - strand, within HMPREF1058_RS05395at 176.423 kb on - strand, within HMPREF1058_RS05395at 176.449 kb on + strand, within HMPREF1058_RS05395at 176.505 kb on - strand, within HMPREF1058_RS05395at 176.549 kb on + strand, within HMPREF1058_RS05395at 176.550 kb on - strand, within HMPREF1058_RS05395at 176.550 kb on - strand, within HMPREF1058_RS05395at 176.615 kb on + strand, within HMPREF1058_RS05395at 176.616 kb on - strand, within HMPREF1058_RS05395at 176.889 kb on + strandat 176.889 kb on + strandat 176.890 kb on - strandat 176.890 kb on - strandat 176.890 kb on - strandat 176.890 kb on - strandat 176.890 kb on - strandat 176.892 kb on - strandat 176.934 kb on + strandat 176.939 kb on - strandat 177.042 kb on - strandat 177.046 kb on - strandat 177.046 kb on - strandat 177.046 kb on - strandat 177.046 kb on - strandat 177.090 kb on - strandat 177.090 kb on - strandat 177.162 kb on + strand, within HMPREF1058_RS05390at 177.163 kb on - strand, within HMPREF1058_RS05390at 177.197 kb on + strand, within HMPREF1058_RS05390at 177.197 kb on + strand, within HMPREF1058_RS05390at 177.198 kb on - strand, within HMPREF1058_RS05390at 177.198 kb on - strand, within HMPREF1058_RS05390at 177.223 kb on - strand, within HMPREF1058_RS05390at 177.228 kb on - strand, within HMPREF1058_RS05390at 177.254 kb on + strand, within HMPREF1058_RS05390at 177.456 kb on - strand, within HMPREF1058_RS05390at 177.456 kb on - strand, within HMPREF1058_RS05390at 177.458 kb on - strand, within HMPREF1058_RS05390at 177.467 kb on + strand, within HMPREF1058_RS05390at 177.488 kb on - strand, within HMPREF1058_RS05390at 177.497 kb on - strand, within HMPREF1058_RS05390at 177.517 kb on + strand, within HMPREF1058_RS05390at 177.569 kb on + strand, within HMPREF1058_RS05390at 177.648 kb on + strand, within HMPREF1058_RS05390at 177.731 kb on + strand, within HMPREF1058_RS05390at 177.999 kb on - strand, within HMPREF1058_RS05385at 178.051 kb on - strand, within HMPREF1058_RS05385

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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173,547 - HMPREF1058_RS05400 0.59 -1.0
173,555 + HMPREF1058_RS05400 0.59 +2.8
173,559 + HMPREF1058_RS05400 0.59 -0.1
173,559 + HMPREF1058_RS05400 0.59 +2.1
173,736 + HMPREF1058_RS05400 0.67 +0.8
173,737 - HMPREF1058_RS05400 0.67 -0.4
173,739 + HMPREF1058_RS05400 0.67 +4.3
173,739 + HMPREF1058_RS05400 0.67 +2.3
173,739 + HMPREF1058_RS05400 0.67 +1.4
173,740 - HMPREF1058_RS05400 0.67 -1.8
173,740 - HMPREF1058_RS05400 0.67 -0.5
173,824 - HMPREF1058_RS05400 0.71 -1.4
173,902 + HMPREF1058_RS05400 0.75 +2.2
174,033 - HMPREF1058_RS05400 0.80 -0.7
174,124 - HMPREF1058_RS05400 0.84 -0.8
174,225 + HMPREF1058_RS05400 0.89 +0.7
174,334 - -2.4
174,376 + +0.4
174,377 - -1.0
174,379 + +1.8
174,418 + +1.5
174,517 + +0.8
174,517 + +0.3
174,523 - +0.4
174,548 - -0.6
174,714 - -1.8
174,756 - HMPREF1058_RS05395 0.10 +0.4
174,869 - HMPREF1058_RS05395 0.14 -1.2
174,873 + HMPREF1058_RS05395 0.15 +1.9
174,873 + HMPREF1058_RS05395 0.15 +1.1
175,119 + HMPREF1058_RS05395 0.24 +1.0
175,321 - HMPREF1058_RS05395 0.32 -3.3
175,330 + HMPREF1058_RS05395 0.32 -1.5
175,376 + HMPREF1058_RS05395 0.34 +1.5
175,380 + HMPREF1058_RS05395 0.34 +0.7
175,381 - HMPREF1058_RS05395 0.34 +0.8
175,443 + HMPREF1058_RS05395 0.37 +1.8
175,443 + HMPREF1058_RS05395 0.37 -1.0
175,448 - HMPREF1058_RS05395 0.37 +0.4
175,448 - +2.2
175,473 - HMPREF1058_RS05395 0.38 -1.8
175,500 - HMPREF1058_RS05395 0.39 -2.7
175,500 - HMPREF1058_RS05395 0.39 -2.6
175,629 + HMPREF1058_RS05395 0.44 +4.2
175,722 - HMPREF1058_RS05395 0.48 +1.4
175,725 + HMPREF1058_RS05395 0.48 -0.2
176,004 + HMPREF1058_RS05395 0.59 -0.1
176,005 - HMPREF1058_RS05395 0.59 -0.3
176,033 + HMPREF1058_RS05395 0.60 +0.4
176,033 + HMPREF1058_RS05395 0.60 +2.4
176,033 + HMPREF1058_RS05395 0.60 +0.9
176,033 + HMPREF1058_RS05395 0.60 +3.8
176,034 - HMPREF1058_RS05395 0.60 -1.7
176,034 - HMPREF1058_RS05395 0.60 -0.5
176,035 + HMPREF1058_RS05395 0.60 +1.4
176,036 - HMPREF1058_RS05395 0.60 -1.3
176,064 + HMPREF1058_RS05395 0.61 +0.9
176,065 - HMPREF1058_RS05395 0.61 -0.5
176,100 - HMPREF1058_RS05395 0.63 -0.3
176,229 - HMPREF1058_RS05395 0.68 -0.8
176,347 + HMPREF1058_RS05395 0.72 +0.6
176,422 + HMPREF1058_RS05395 0.75 +1.1
176,423 - HMPREF1058_RS05395 0.75 -2.0
176,423 - HMPREF1058_RS05395 0.75 -0.7
176,449 + HMPREF1058_RS05395 0.76 +1.2
176,505 - HMPREF1058_RS05395 0.78 -1.2
176,549 + HMPREF1058_RS05395 0.80 +2.4
176,550 - HMPREF1058_RS05395 0.80 -0.4
176,550 - HMPREF1058_RS05395 0.80 -0.9
176,615 + HMPREF1058_RS05395 0.83 +0.4
176,616 - HMPREF1058_RS05395 0.83 -1.5
176,889 + +2.0
176,889 + +0.2
176,890 - -1.1
176,890 - +0.1
176,890 - +0.8
176,890 - -0.6
176,890 - +1.4
176,892 - -0.4
176,934 + +0.7
176,939 - -0.7
177,042 - -1.6
177,046 - +1.8
177,046 - -2.3
177,046 - +0.4
177,046 - -3.4
177,090 - +0.2
177,090 - -0.8
177,162 + HMPREF1058_RS05390 0.11 +1.6
177,163 - HMPREF1058_RS05390 0.11 -0.7
177,197 + HMPREF1058_RS05390 0.15 +1.6
177,197 + HMPREF1058_RS05390 0.15 +1.4
177,198 - HMPREF1058_RS05390 0.15 +2.4
177,198 - HMPREF1058_RS05390 0.15 +2.1
177,223 - HMPREF1058_RS05390 0.18 +2.4
177,228 - HMPREF1058_RS05390 0.19 -1.4
177,254 + HMPREF1058_RS05390 0.22 +0.8
177,456 - HMPREF1058_RS05390 0.47 -1.2
177,456 - HMPREF1058_RS05390 0.47 -0.5
177,458 - HMPREF1058_RS05390 0.47 -0.2
177,467 + HMPREF1058_RS05390 0.48 +0.1
177,488 - HMPREF1058_RS05390 0.51 -1.3
177,497 - HMPREF1058_RS05390 0.52 -2.3
177,517 + HMPREF1058_RS05390 0.55 +1.2
177,569 + HMPREF1058_RS05390 0.61 +2.0
177,648 + HMPREF1058_RS05390 0.71 -0.7
177,731 + HMPREF1058_RS05390 0.81 +1.3
177,999 - HMPREF1058_RS05385 0.12 -2.8
178,051 - HMPREF1058_RS05385 0.21 +0.2

Or see this region's nucleotide sequence