Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03610 and HMPREF1058_RS03605 overlap by 1 nucleotides HMPREF1058_RS03605 and HMPREF1058_RS03600 are separated by 4 nucleotides
HMPREF1058_RS03610: HMPREF1058_RS03610 - glycosyltransferase family 4 protein, at 238,337 to 239,446
_RS03610
HMPREF1058_RS03605: HMPREF1058_RS03605 - glycosyltransferase family 2 protein, at 239,446 to 240,321
_RS03605
HMPREF1058_RS03600: HMPREF1058_RS03600 - oligosaccharide repeat unit polymerase, at 240,326 to 241,426
_RS03600
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 238.469 kb on - strand, within HMPREF1058_RS03610 at 238.491 kb on - strand, within HMPREF1058_RS03610 at 238.532 kb on + strand at 238.537 kb on + strand, within HMPREF1058_RS03610 at 238.553 kb on - strand, within HMPREF1058_RS03610 at 238.620 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.673 kb on - strand, within HMPREF1058_RS03610 at 238.799 kb on + strand, within HMPREF1058_RS03610 at 238.827 kb on + strand, within HMPREF1058_RS03610 at 238.828 kb on - strand, within HMPREF1058_RS03610 at 238.844 kb on + strand, within HMPREF1058_RS03610 at 238.850 kb on - strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.901 kb on + strand, within HMPREF1058_RS03610 at 238.919 kb on + strand, within HMPREF1058_RS03610 at 239.009 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.063 kb on + strand, within HMPREF1058_RS03610 at 239.122 kb on + strand, within HMPREF1058_RS03610 at 239.123 kb on - strand, within HMPREF1058_RS03610 at 239.129 kb on + strand, within HMPREF1058_RS03610 at 239.171 kb on - strand, within HMPREF1058_RS03610 at 239.174 kb on + strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.180 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.203 kb on + strand, within HMPREF1058_RS03610 at 239.207 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.222 kb on + strand, within HMPREF1058_RS03610 at 239.261 kb on + strand, within HMPREF1058_RS03610 at 239.269 kb on + strand, within HMPREF1058_RS03610 at 239.270 kb on - strand, within HMPREF1058_RS03610 at 239.302 kb on - strand, within HMPREF1058_RS03610 at 239.303 kb on + strand, within HMPREF1058_RS03610 at 239.304 kb on - strand, within HMPREF1058_RS03610 at 239.305 kb on + strand, within HMPREF1058_RS03610 at 239.306 kb on - strand, within HMPREF1058_RS03610 at 239.306 kb on - strand, within HMPREF1058_RS03610 at 239.306 kb on - strand, within HMPREF1058_RS03610 at 239.401 kb on + strand at 239.473 kb on + strand at 239.473 kb on + strand at 239.477 kb on - strand at 239.478 kb on + strand at 239.482 kb on + strand at 239.553 kb on - strand, within HMPREF1058_RS03605 at 239.584 kb on + strand, within HMPREF1058_RS03605 at 239.585 kb on - strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.588 kb on + strand, within HMPREF1058_RS03605 at 239.589 kb on - strand, within HMPREF1058_RS03605 at 239.589 kb on - strand, within HMPREF1058_RS03605 at 239.607 kb on - strand, within HMPREF1058_RS03605 at 239.614 kb on - strand, within HMPREF1058_RS03605 at 239.618 kb on + strand, within HMPREF1058_RS03605 at 239.641 kb on - strand, within HMPREF1058_RS03605 at 239.688 kb on + strand, within HMPREF1058_RS03605 at 239.743 kb on + strand, within HMPREF1058_RS03605 at 239.743 kb on + strand, within HMPREF1058_RS03605 at 239.750 kb on + strand, within HMPREF1058_RS03605 at 239.799 kb on + strand, within HMPREF1058_RS03605 at 239.799 kb on + strand, within HMPREF1058_RS03605 at 239.900 kb on + strand, within HMPREF1058_RS03605 at 239.990 kb on + strand, within HMPREF1058_RS03605 at 239.990 kb on + strand, within HMPREF1058_RS03605 at 240.042 kb on - strand, within HMPREF1058_RS03605 at 240.058 kb on - strand, within HMPREF1058_RS03605 at 240.083 kb on + strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.084 kb on - strand, within HMPREF1058_RS03605 at 240.103 kb on - strand, within HMPREF1058_RS03605 at 240.103 kb on - strand, within HMPREF1058_RS03605 at 240.105 kb on + strand, within HMPREF1058_RS03605 at 240.114 kb on + strand, within HMPREF1058_RS03605 at 240.114 kb on + strand, within HMPREF1058_RS03605 at 240.115 kb on - strand, within HMPREF1058_RS03605 at 240.195 kb on + strand at 240.227 kb on - strand, within HMPREF1058_RS03605 at 240.242 kb on + strand at 240.281 kb on + strand at 240.282 kb on - strand at 240.294 kb on + strand at 240.297 kb on - strand at 240.297 kb on - strand at 240.329 kb on + strand at 240.343 kb on + strand at 240.350 kb on + strand at 240.350 kb on + strand at 240.350 kb on + strand at 240.394 kb on + strand at 240.394 kb on + strand at 240.394 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.396 kb on + strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.398 kb on + strand at 240.399 kb on - strand at 240.407 kb on - strand at 240.418 kb on + strand at 240.437 kb on + strand, within HMPREF1058_RS03600 at 240.438 kb on - strand, within HMPREF1058_RS03600 at 240.446 kb on - strand, within HMPREF1058_RS03600 at 240.499 kb on + strand, within HMPREF1058_RS03600 at 240.501 kb on + strand, within HMPREF1058_RS03600 at 240.579 kb on - strand, within HMPREF1058_RS03600 at 240.587 kb on + strand, within HMPREF1058_RS03600 at 240.588 kb on - strand, within HMPREF1058_RS03600 at 240.642 kb on - strand, within HMPREF1058_RS03600 at 240.702 kb on + strand, within HMPREF1058_RS03600 at 240.706 kb on + strand, within HMPREF1058_RS03600 at 240.711 kb on - strand, within HMPREF1058_RS03600 at 240.752 kb on - strand, within HMPREF1058_RS03600 at 240.752 kb on - strand, within HMPREF1058_RS03600 at 240.775 kb on + strand, within HMPREF1058_RS03600 at 240.852 kb on - strand, within HMPREF1058_RS03600 at 240.894 kb on - strand, within HMPREF1058_RS03600 at 240.915 kb on - strand, within HMPREF1058_RS03600 at 240.948 kb on - strand, within HMPREF1058_RS03600 at 240.956 kb on + strand, within HMPREF1058_RS03600 at 240.958 kb on + strand, within HMPREF1058_RS03600 at 240.959 kb on - strand, within HMPREF1058_RS03600 at 241.004 kb on - strand, within HMPREF1058_RS03600 at 241.018 kb on + strand, within HMPREF1058_RS03600 at 241.139 kb on + strand, within HMPREF1058_RS03600 at 241.169 kb on + strand, within HMPREF1058_RS03600 at 241.176 kb on + strand, within HMPREF1058_RS03600 at 241.191 kb on - strand, within HMPREF1058_RS03600 at 241.202 kb on + strand at 241.226 kb on + strand, within HMPREF1058_RS03600 at 241.252 kb on + strand, within HMPREF1058_RS03600 at 241.252 kb on + strand, within HMPREF1058_RS03600 at 241.253 kb on - strand, within HMPREF1058_RS03600 at 241.268 kb on - strand, within HMPREF1058_RS03600 at 241.305 kb on + strand, within HMPREF1058_RS03600 at 241.306 kb on - strand, within HMPREF1058_RS03600 at 241.314 kb on - strand, within HMPREF1058_RS03600 at 241.318 kb on + strand at 241.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 238,469 - HMPREF1058_RS03610 0.12 +1.2 238,491 - HMPREF1058_RS03610 0.14 +3.2 238,532 + -0.3 238,537 + HMPREF1058_RS03610 0.18 -0.5 238,553 - HMPREF1058_RS03610 0.19 +3.6 238,620 + HMPREF1058_RS03610 0.25 +0.5 238,658 + HMPREF1058_RS03610 0.29 +2.5 238,658 + HMPREF1058_RS03610 0.29 -2.6 238,658 + HMPREF1058_RS03610 0.29 -1.2 238,667 + HMPREF1058_RS03610 0.30 -0.5 238,667 + HMPREF1058_RS03610 0.30 -0.8 238,667 + HMPREF1058_RS03610 0.30 -1.5 238,673 - HMPREF1058_RS03610 0.30 +4.4 238,799 + HMPREF1058_RS03610 0.42 -1.5 238,827 + HMPREF1058_RS03610 0.44 +2.0 238,828 - HMPREF1058_RS03610 0.44 +4.1 238,844 + HMPREF1058_RS03610 0.46 +1.1 238,850 - HMPREF1058_RS03610 0.46 +3.7 238,861 + HMPREF1058_RS03610 0.47 -0.1 238,861 + HMPREF1058_RS03610 0.47 +1.2 238,901 + HMPREF1058_RS03610 0.51 -0.1 238,919 + HMPREF1058_RS03610 0.52 -0.5 239,009 + HMPREF1058_RS03610 0.61 +0.6 239,060 + HMPREF1058_RS03610 0.65 +2.8 239,060 + HMPREF1058_RS03610 0.65 -0.3 239,063 + HMPREF1058_RS03610 0.65 +0.2 239,122 + HMPREF1058_RS03610 0.71 -1.7 239,123 - HMPREF1058_RS03610 0.71 +3.0 239,129 + HMPREF1058_RS03610 0.71 -0.2 239,171 - HMPREF1058_RS03610 0.75 +3.2 239,174 + HMPREF1058_RS03610 0.75 +0.8 239,175 - HMPREF1058_RS03610 0.75 +0.8 239,175 - HMPREF1058_RS03610 0.75 +3.1 239,175 - HMPREF1058_RS03610 0.75 +3.0 239,175 - HMPREF1058_RS03610 0.75 +3.4 239,180 - HMPREF1058_RS03610 0.76 +2.9 239,193 - HMPREF1058_RS03610 0.77 -0.6 239,193 - HMPREF1058_RS03610 0.77 +2.1 239,201 + HMPREF1058_RS03610 0.78 -1.2 239,201 + HMPREF1058_RS03610 0.78 +0.2 239,203 + HMPREF1058_RS03610 0.78 -0.3 239,207 - HMPREF1058_RS03610 0.78 +4.2 239,211 - HMPREF1058_RS03610 0.79 -2.1 239,211 - HMPREF1058_RS03610 0.79 +3.8 239,222 + HMPREF1058_RS03610 0.80 +0.5 239,261 + HMPREF1058_RS03610 0.83 +0.4 239,269 + HMPREF1058_RS03610 0.84 -0.5 239,270 - HMPREF1058_RS03610 0.84 +3.6 239,302 - HMPREF1058_RS03610 0.87 +3.8 239,303 + HMPREF1058_RS03610 0.87 -1.8 239,304 - HMPREF1058_RS03610 0.87 +5.0 239,305 + HMPREF1058_RS03610 0.87 -1.2 239,306 - HMPREF1058_RS03610 0.87 +2.7 239,306 - HMPREF1058_RS03610 0.87 +0.2 239,306 - HMPREF1058_RS03610 0.87 +4.5 239,401 + +2.9 239,473 + -0.4 239,473 + -0.2 239,477 - +3.0 239,478 + +0.2 239,482 + -0.6 239,553 - HMPREF1058_RS03605 0.12 +5.1 239,584 + HMPREF1058_RS03605 0.16 +0.1 239,585 - HMPREF1058_RS03605 0.16 -0.6 239,588 + HMPREF1058_RS03605 0.16 -0.6 239,588 + HMPREF1058_RS03605 0.16 +0.9 239,588 + HMPREF1058_RS03605 0.16 -0.1 239,588 + HMPREF1058_RS03605 0.16 +0.5 239,588 + HMPREF1058_RS03605 0.16 -0.3 239,589 - HMPREF1058_RS03605 0.16 +3.0 239,589 - HMPREF1058_RS03605 0.16 +2.8 239,607 - HMPREF1058_RS03605 0.18 +0.1 239,614 - HMPREF1058_RS03605 0.19 +4.3 239,618 + HMPREF1058_RS03605 0.20 +0.6 239,641 - HMPREF1058_RS03605 0.22 +3.2 239,688 + HMPREF1058_RS03605 0.28 +0.2 239,743 + HMPREF1058_RS03605 0.34 +0.5 239,743 + HMPREF1058_RS03605 0.34 -1.9 239,750 + HMPREF1058_RS03605 0.35 +0.8 239,799 + HMPREF1058_RS03605 0.40 -1.2 239,799 + HMPREF1058_RS03605 0.40 -0.6 239,900 + HMPREF1058_RS03605 0.52 +0.4 239,990 + HMPREF1058_RS03605 0.62 +0.3 239,990 + HMPREF1058_RS03605 0.62 +0.9 240,042 - HMPREF1058_RS03605 0.68 +2.1 240,058 - HMPREF1058_RS03605 0.70 +3.5 240,083 + HMPREF1058_RS03605 0.73 -1.2 240,084 - HMPREF1058_RS03605 0.73 +3.3 240,084 - HMPREF1058_RS03605 0.73 +5.1 240,084 - HMPREF1058_RS03605 0.73 +3.1 240,103 - HMPREF1058_RS03605 0.75 +5.6 240,103 - HMPREF1058_RS03605 0.75 +2.1 240,105 + HMPREF1058_RS03605 0.75 -0.6 240,114 + HMPREF1058_RS03605 0.76 -2.2 240,114 + HMPREF1058_RS03605 0.76 +1.5 240,115 - HMPREF1058_RS03605 0.76 +3.3 240,195 + +2.5 240,227 - HMPREF1058_RS03605 0.89 +3.0 240,242 + -0.3 240,281 + -0.9 240,282 - +3.5 240,294 + -1.1 240,297 - +1.9 240,297 - +5.2 240,329 + +1.9 240,343 + -1.7 240,350 + -0.6 240,350 + +2.9 240,350 + -0.1 240,394 + -1.1 240,394 + +1.1 240,394 + +0.5 240,396 + +0.7 240,396 + +0.1 240,396 + -1.6 240,396 + +1.2 240,396 + +0.5 240,396 + -1.4 240,397 - +2.5 240,397 - +3.7 240,397 - +5.1 240,397 - +4.1 240,398 + -1.6 240,399 - +1.9 240,407 - -0.5 240,418 + -1.4 240,437 + HMPREF1058_RS03600 0.10 -3.0 240,438 - HMPREF1058_RS03600 0.10 -0.1 240,446 - HMPREF1058_RS03600 0.11 +0.9 240,499 + HMPREF1058_RS03600 0.16 -0.6 240,501 + HMPREF1058_RS03600 0.16 -0.5 240,579 - HMPREF1058_RS03600 0.23 +3.4 240,587 + HMPREF1058_RS03600 0.24 -0.5 240,588 - HMPREF1058_RS03600 0.24 +0.9 240,642 - HMPREF1058_RS03600 0.29 +2.3 240,702 + HMPREF1058_RS03600 0.34 -1.6 240,706 + HMPREF1058_RS03600 0.35 -1.0 240,711 - HMPREF1058_RS03600 0.35 +3.5 240,752 - HMPREF1058_RS03600 0.39 +3.4 240,752 - HMPREF1058_RS03600 0.39 +1.5 240,775 + HMPREF1058_RS03600 0.41 -1.1 240,852 - HMPREF1058_RS03600 0.48 +3.5 240,894 - HMPREF1058_RS03600 0.52 +1.2 240,915 - HMPREF1058_RS03600 0.53 +0.2 240,948 - HMPREF1058_RS03600 0.56 +4.0 240,956 + HMPREF1058_RS03600 0.57 -0.6 240,958 + HMPREF1058_RS03600 0.57 +1.1 240,959 - HMPREF1058_RS03600 0.57 +1.2 241,004 - HMPREF1058_RS03600 0.62 +2.9 241,018 + HMPREF1058_RS03600 0.63 -0.3 241,139 + HMPREF1058_RS03600 0.74 -0.2 241,169 + HMPREF1058_RS03600 0.77 -0.7 241,176 + HMPREF1058_RS03600 0.77 +3.0 241,191 - HMPREF1058_RS03600 0.79 +1.5 241,202 + +1.5 241,226 + HMPREF1058_RS03600 0.82 +0.8 241,252 + HMPREF1058_RS03600 0.84 -0.5 241,252 + HMPREF1058_RS03600 0.84 -0.6 241,253 - HMPREF1058_RS03600 0.84 +0.5 241,268 - HMPREF1058_RS03600 0.86 +2.9 241,305 + HMPREF1058_RS03600 0.89 -1.2 241,306 - HMPREF1058_RS03600 0.89 +2.0 241,314 - HMPREF1058_RS03600 0.90 -0.5 241,318 + +2.7 241,319 - +8.2
Or see this region's nucleotide sequence