Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00275 and HMPREF1058_RS00270 are separated by 22 nucleotides HMPREF1058_RS00270 and HMPREF1058_RS00265 are separated by 83 nucleotides HMPREF1058_RS00265 and HMPREF1058_RS00260 are separated by 177 nucleotides
HMPREF1058_RS00275: HMPREF1058_RS00275 - RagB/SusD family nutrient uptake outer membrane protein, at 15,697 to 17,385
_RS00275
HMPREF1058_RS00270: HMPREF1058_RS00270 - L-rhamnose mutarotase, at 17,408 to 17,791
_RS00270
HMPREF1058_RS00265: HMPREF1058_RS00265 - glycoside hydrolase family 97 protein, at 17,875 to 19,746
_RS00265
HMPREF1058_RS00260: HMPREF1058_RS00260 - xylosidase, at 19,924 to 22,122
_RS00260
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.879 kb on - strand, within HMPREF1058_RS00275 at 16.879 kb on - strand, within HMPREF1058_RS00275 at 16.888 kb on - strand, within HMPREF1058_RS00275 at 16.909 kb on + strand, within HMPREF1058_RS00275 at 16.917 kb on + strand, within HMPREF1058_RS00275 at 16.940 kb on + strand, within HMPREF1058_RS00275 at 16.941 kb on - strand, within HMPREF1058_RS00275 at 16.941 kb on - strand, within HMPREF1058_RS00275 at 16.962 kb on - strand, within HMPREF1058_RS00275 at 17.021 kb on + strand, within HMPREF1058_RS00275 at 17.022 kb on - strand, within HMPREF1058_RS00275 at 17.064 kb on - strand, within HMPREF1058_RS00275 at 17.140 kb on + strand, within HMPREF1058_RS00275 at 17.178 kb on + strand, within HMPREF1058_RS00275 at 17.178 kb on + strand, within HMPREF1058_RS00275 at 17.198 kb on + strand, within HMPREF1058_RS00275 at 17.231 kb on - strand at 17.271 kb on + strand at 17.275 kb on + strand at 17.275 kb on + strand at 17.275 kb on + strand at 17.276 kb on - strand at 17.276 kb on - strand at 17.276 kb on - strand at 17.278 kb on + strand at 17.348 kb on + strand at 17.378 kb on - strand at 17.379 kb on + strand at 17.380 kb on - strand at 17.380 kb on - strand at 17.507 kb on + strand, within HMPREF1058_RS00270 at 17.578 kb on - strand, within HMPREF1058_RS00270 at 17.590 kb on - strand, within HMPREF1058_RS00270 at 17.590 kb on - strand, within HMPREF1058_RS00270 at 17.591 kb on + strand, within HMPREF1058_RS00270 at 17.591 kb on + strand, within HMPREF1058_RS00270 at 17.592 kb on - strand, within HMPREF1058_RS00270 at 17.593 kb on + strand, within HMPREF1058_RS00270 at 17.593 kb on + strand, within HMPREF1058_RS00270 at 17.594 kb on - strand, within HMPREF1058_RS00270 at 17.596 kb on - strand, within HMPREF1058_RS00270 at 17.771 kb on - strand at 17.777 kb on + strand at 17.778 kb on - strand at 17.827 kb on + strand at 17.860 kb on - strand at 17.860 kb on - strand at 17.932 kb on - strand at 17.951 kb on + strand at 18.036 kb on + strand at 18.059 kb on + strand at 18.102 kb on - strand, within HMPREF1058_RS00265 at 18.136 kb on + strand, within HMPREF1058_RS00265 at 18.232 kb on - strand, within HMPREF1058_RS00265 at 18.247 kb on - strand, within HMPREF1058_RS00265 at 18.257 kb on + strand, within HMPREF1058_RS00265 at 18.257 kb on + strand, within HMPREF1058_RS00265 at 18.258 kb on - strand, within HMPREF1058_RS00265 at 18.313 kb on + strand, within HMPREF1058_RS00265 at 18.314 kb on - strand, within HMPREF1058_RS00265 at 18.314 kb on - strand, within HMPREF1058_RS00265 at 18.314 kb on - strand, within HMPREF1058_RS00265 at 18.476 kb on + strand, within HMPREF1058_RS00265 at 18.494 kb on + strand, within HMPREF1058_RS00265 at 18.517 kb on + strand, within HMPREF1058_RS00265 at 18.522 kb on + strand, within HMPREF1058_RS00265 at 18.526 kb on - strand, within HMPREF1058_RS00265 at 18.543 kb on + strand, within HMPREF1058_RS00265 at 18.549 kb on + strand, within HMPREF1058_RS00265 at 18.656 kb on + strand, within HMPREF1058_RS00265 at 18.725 kb on + strand, within HMPREF1058_RS00265 at 18.736 kb on + strand, within HMPREF1058_RS00265 at 18.738 kb on + strand, within HMPREF1058_RS00265 at 18.738 kb on + strand, within HMPREF1058_RS00265 at 18.738 kb on + strand, within HMPREF1058_RS00265 at 18.739 kb on - strand, within HMPREF1058_RS00265 at 18.739 kb on - strand, within HMPREF1058_RS00265 at 18.810 kb on + strand, within HMPREF1058_RS00265 at 18.911 kb on - strand, within HMPREF1058_RS00265 at 19.005 kb on - strand, within HMPREF1058_RS00265 at 19.008 kb on + strand, within HMPREF1058_RS00265 at 19.025 kb on + strand, within HMPREF1058_RS00265 at 19.053 kb on + strand, within HMPREF1058_RS00265 at 19.054 kb on - strand, within HMPREF1058_RS00265 at 19.054 kb on - strand, within HMPREF1058_RS00265 at 19.067 kb on - strand, within HMPREF1058_RS00265 at 19.153 kb on + strand, within HMPREF1058_RS00265 at 19.181 kb on + strand, within HMPREF1058_RS00265 at 19.182 kb on - strand, within HMPREF1058_RS00265 at 19.182 kb on - strand, within HMPREF1058_RS00265 at 19.182 kb on - strand, within HMPREF1058_RS00265 at 19.199 kb on - strand, within HMPREF1058_RS00265 at 19.199 kb on - strand, within HMPREF1058_RS00265 at 19.203 kb on + strand, within HMPREF1058_RS00265 at 19.246 kb on - strand, within HMPREF1058_RS00265 at 19.246 kb on - strand, within HMPREF1058_RS00265 at 19.272 kb on - strand, within HMPREF1058_RS00265 at 19.272 kb on - strand, within HMPREF1058_RS00265 at 19.287 kb on + strand, within HMPREF1058_RS00265 at 19.287 kb on + strand, within HMPREF1058_RS00265 at 19.288 kb on - strand, within HMPREF1058_RS00265 at 19.288 kb on - strand, within HMPREF1058_RS00265 at 19.296 kb on + strand, within HMPREF1058_RS00265 at 19.296 kb on + strand, within HMPREF1058_RS00265 at 19.323 kb on + strand, within HMPREF1058_RS00265 at 19.323 kb on + strand, within HMPREF1058_RS00265 at 19.323 kb on + strand, within HMPREF1058_RS00265 at 19.359 kb on + strand, within HMPREF1058_RS00265 at 19.407 kb on + strand, within HMPREF1058_RS00265 at 19.428 kb on - strand, within HMPREF1058_RS00265 at 19.507 kb on - strand, within HMPREF1058_RS00265 at 19.507 kb on - strand, within HMPREF1058_RS00265 at 19.515 kb on + strand, within HMPREF1058_RS00265 at 19.528 kb on - strand, within HMPREF1058_RS00265 at 19.605 kb on + strand at 19.605 kb on + strand at 19.606 kb on - strand at 19.652 kb on + strand at 19.653 kb on - strand at 19.744 kb on + strand at 19.745 kb on - strand at 19.756 kb on - strand at 19.756 kb on - strand at 19.770 kb on + strand at 19.772 kb on + strand at 19.807 kb on - strand at 19.818 kb on + strand at 19.829 kb on - strand at 19.849 kb on + strand at 19.902 kb on + strand at 19.903 kb on - strand at 19.906 kb on - strand at 20.020 kb on - strand at 20.064 kb on + strand at 20.065 kb on - strand at 20.065 kb on - strand at 20.109 kb on + strand at 20.164 kb on - strand, within HMPREF1058_RS00260 at 20.187 kb on - strand, within HMPREF1058_RS00260 at 20.301 kb on - strand, within HMPREF1058_RS00260 at 20.428 kb on + strand, within HMPREF1058_RS00260 at 20.429 kb on - strand, within HMPREF1058_RS00260 at 20.456 kb on + strand, within HMPREF1058_RS00260 at 20.457 kb on - strand, within HMPREF1058_RS00260 at 20.485 kb on + strand, within HMPREF1058_RS00260 at 20.486 kb on - strand, within HMPREF1058_RS00260 at 20.492 kb on + strand, within HMPREF1058_RS00260 at 20.506 kb on + strand, within HMPREF1058_RS00260 at 20.521 kb on + strand, within HMPREF1058_RS00260 at 20.521 kb on + strand, within HMPREF1058_RS00260 at 20.522 kb on - strand, within HMPREF1058_RS00260 at 20.561 kb on + strand, within HMPREF1058_RS00260 at 20.581 kb on + strand, within HMPREF1058_RS00260 at 20.590 kb on + strand, within HMPREF1058_RS00260 at 20.590 kb on + strand, within HMPREF1058_RS00260 at 20.612 kb on + strand, within HMPREF1058_RS00260 at 20.612 kb on + strand, within HMPREF1058_RS00260 at 20.649 kb on + strand, within HMPREF1058_RS00260 at 20.696 kb on - strand, within HMPREF1058_RS00260 at 20.697 kb on + strand, within HMPREF1058_RS00260 at 20.698 kb on - strand, within HMPREF1058_RS00260 at 20.698 kb on - strand, within HMPREF1058_RS00260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 16,879 - HMPREF1058_RS00275 0.70 -0.1 16,879 - HMPREF1058_RS00275 0.70 +0.8 16,888 - HMPREF1058_RS00275 0.71 +0.0 16,909 + HMPREF1058_RS00275 0.72 +1.9 16,917 + HMPREF1058_RS00275 0.72 -1.3 16,940 + HMPREF1058_RS00275 0.74 +1.8 16,941 - HMPREF1058_RS00275 0.74 -1.6 16,941 - HMPREF1058_RS00275 0.74 -1.1 16,962 - HMPREF1058_RS00275 0.75 -2.8 17,021 + HMPREF1058_RS00275 0.78 -0.1 17,022 - HMPREF1058_RS00275 0.78 +1.7 17,064 - HMPREF1058_RS00275 0.81 -1.2 17,140 + HMPREF1058_RS00275 0.85 +2.1 17,178 + HMPREF1058_RS00275 0.88 +0.6 17,178 + HMPREF1058_RS00275 0.88 +0.8 17,198 + HMPREF1058_RS00275 0.89 +0.8 17,231 - -0.4 17,271 + -0.8 17,275 + -1.5 17,275 + +0.9 17,275 + -0.1 17,276 - +0.3 17,276 - -0.1 17,276 - -1.3 17,278 + -2.3 17,348 + +0.1 17,378 - -0.9 17,379 + +1.1 17,380 - -0.3 17,380 - -0.5 17,507 + HMPREF1058_RS00270 0.26 +0.6 17,578 - HMPREF1058_RS00270 0.44 +2.4 17,590 - HMPREF1058_RS00270 0.47 +0.9 17,590 - HMPREF1058_RS00270 0.47 +0.3 17,591 + HMPREF1058_RS00270 0.48 +1.1 17,591 + HMPREF1058_RS00270 0.48 +0.8 17,592 - HMPREF1058_RS00270 0.48 -0.4 17,593 + HMPREF1058_RS00270 0.48 +2.4 17,593 + HMPREF1058_RS00270 0.48 -1.2 17,594 - HMPREF1058_RS00270 0.48 +1.1 17,596 - HMPREF1058_RS00270 0.49 +0.4 17,771 - -0.0 17,777 + -2.3 17,778 - -1.5 17,827 + +2.4 17,860 - +1.4 17,860 - +0.8 17,932 - -1.9 17,951 + -0.1 18,036 + -0.4 18,059 + +0.6 18,102 - HMPREF1058_RS00265 0.12 -0.1 18,136 + HMPREF1058_RS00265 0.14 -0.7 18,232 - HMPREF1058_RS00265 0.19 -0.5 18,247 - HMPREF1058_RS00265 0.20 -0.9 18,257 + HMPREF1058_RS00265 0.20 -1.6 18,257 + HMPREF1058_RS00265 0.20 -2.6 18,258 - HMPREF1058_RS00265 0.20 -1.1 18,313 + HMPREF1058_RS00265 0.23 -0.8 18,314 - HMPREF1058_RS00265 0.23 -2.6 18,314 - HMPREF1058_RS00265 0.23 +1.3 18,314 - HMPREF1058_RS00265 0.23 +0.4 18,476 + HMPREF1058_RS00265 0.32 -1.2 18,494 + HMPREF1058_RS00265 0.33 -1.5 18,517 + HMPREF1058_RS00265 0.34 +0.2 18,522 + HMPREF1058_RS00265 0.35 -0.8 18,526 - HMPREF1058_RS00265 0.35 -2.3 18,543 + HMPREF1058_RS00265 0.36 +0.8 18,549 + HMPREF1058_RS00265 0.36 -0.1 18,656 + HMPREF1058_RS00265 0.42 -0.2 18,725 + HMPREF1058_RS00265 0.45 -1.4 18,736 + HMPREF1058_RS00265 0.46 -0.7 18,738 + HMPREF1058_RS00265 0.46 +0.1 18,738 + HMPREF1058_RS00265 0.46 -0.4 18,738 + HMPREF1058_RS00265 0.46 -0.8 18,739 - HMPREF1058_RS00265 0.46 +1.1 18,739 - HMPREF1058_RS00265 0.46 +2.8 18,810 + HMPREF1058_RS00265 0.50 -2.2 18,911 - HMPREF1058_RS00265 0.55 -0.5 19,005 - HMPREF1058_RS00265 0.60 +0.6 19,008 + HMPREF1058_RS00265 0.61 -1.6 19,025 + HMPREF1058_RS00265 0.61 +3.6 19,053 + HMPREF1058_RS00265 0.63 -2.2 19,054 - HMPREF1058_RS00265 0.63 -0.4 19,054 - HMPREF1058_RS00265 0.63 +0.6 19,067 - HMPREF1058_RS00265 0.64 -0.2 19,153 + HMPREF1058_RS00265 0.68 -1.4 19,181 + HMPREF1058_RS00265 0.70 +1.8 19,182 - HMPREF1058_RS00265 0.70 -0.2 19,182 - HMPREF1058_RS00265 0.70 -0.3 19,182 - HMPREF1058_RS00265 0.70 -0.8 19,199 - HMPREF1058_RS00265 0.71 -0.5 19,199 - HMPREF1058_RS00265 0.71 -0.6 19,203 + HMPREF1058_RS00265 0.71 -1.8 19,246 - HMPREF1058_RS00265 0.73 +1.6 19,246 - HMPREF1058_RS00265 0.73 +1.1 19,272 - HMPREF1058_RS00265 0.75 +0.1 19,272 - HMPREF1058_RS00265 0.75 +0.4 19,287 + HMPREF1058_RS00265 0.75 -0.6 19,287 + HMPREF1058_RS00265 0.75 -0.6 19,288 - HMPREF1058_RS00265 0.75 -2.1 19,288 - HMPREF1058_RS00265 0.75 +0.3 19,296 + HMPREF1058_RS00265 0.76 +1.6 19,296 + HMPREF1058_RS00265 0.76 -0.7 19,323 + HMPREF1058_RS00265 0.77 -0.6 19,323 + HMPREF1058_RS00265 0.77 -3.5 19,323 + HMPREF1058_RS00265 0.77 +0.2 19,359 + HMPREF1058_RS00265 0.79 -2.1 19,407 + HMPREF1058_RS00265 0.82 +0.8 19,428 - HMPREF1058_RS00265 0.83 -0.3 19,507 - HMPREF1058_RS00265 0.87 -0.0 19,507 - HMPREF1058_RS00265 0.87 +0.6 19,515 + HMPREF1058_RS00265 0.88 -1.5 19,528 - HMPREF1058_RS00265 0.88 +0.8 19,605 + -0.3 19,605 + -0.6 19,606 - +1.5 19,652 + +1.1 19,653 - +0.9 19,744 + +1.8 19,745 - -0.5 19,756 - -1.5 19,756 - -0.0 19,770 + -0.5 19,772 + +0.2 19,807 - +1.2 19,818 + -0.6 19,829 - -0.8 19,849 + -1.1 19,902 + -0.3 19,903 - +1.2 19,906 - -0.4 20,020 - +0.4 20,064 + +0.2 20,065 - -0.8 20,065 - -0.6 20,109 + -1.1 20,164 - HMPREF1058_RS00260 0.11 +0.8 20,187 - HMPREF1058_RS00260 0.12 -1.5 20,301 - HMPREF1058_RS00260 0.17 -0.8 20,428 + HMPREF1058_RS00260 0.23 -1.9 20,429 - HMPREF1058_RS00260 0.23 -1.8 20,456 + HMPREF1058_RS00260 0.24 -0.5 20,457 - HMPREF1058_RS00260 0.24 -0.5 20,485 + HMPREF1058_RS00260 0.26 -1.0 20,486 - HMPREF1058_RS00260 0.26 -2.2 20,492 + HMPREF1058_RS00260 0.26 -1.6 20,506 + HMPREF1058_RS00260 0.26 -1.0 20,521 + HMPREF1058_RS00260 0.27 +0.9 20,521 + HMPREF1058_RS00260 0.27 +0.3 20,522 - HMPREF1058_RS00260 0.27 -1.8 20,561 + HMPREF1058_RS00260 0.29 -0.6 20,581 + HMPREF1058_RS00260 0.30 -1.3 20,590 + HMPREF1058_RS00260 0.30 -0.7 20,590 + HMPREF1058_RS00260 0.30 -1.2 20,612 + HMPREF1058_RS00260 0.31 -1.4 20,612 + HMPREF1058_RS00260 0.31 -1.1 20,649 + HMPREF1058_RS00260 0.33 +2.4 20,696 - HMPREF1058_RS00260 0.35 +0.6 20,697 + HMPREF1058_RS00260 0.35 -1.2 20,698 - HMPREF1058_RS00260 0.35 -2.0 20,698 - HMPREF1058_RS00260 0.35 -0.3
Or see this region's nucleotide sequence