Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00205 and HMPREF1058_RS00200 overlap by 14 nucleotides HMPREF1058_RS00200 and HMPREF1058_RS00195 are separated by 2 nucleotides HMPREF1058_RS00195 and HMPREF1058_RS00190 are separated by 11 nucleotides
HMPREF1058_RS00205: HMPREF1058_RS00205 - cation:proton antiporter, at 32,680 to 34,827
_RS00205
HMPREF1058_RS00200: HMPREF1058_RS00200 - tRNA threonylcarbamoyladenosine dehydratase, at 34,814 to 35,536
_RS00200
HMPREF1058_RS00195: HMPREF1058_RS00195 - ABC transporter ATP-binding protein, at 35,539 to 36,198
_RS00195
HMPREF1058_RS00190: HMPREF1058_RS00190 - FimB/Mfa2 family fimbrial subunit, at 36,210 to 37,163
_RS00190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1
2 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.959 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.167 kb on + strand, within HMPREF1058_RS00205 at 34.189 kb on + strand, within HMPREF1058_RS00205 at 34.211 kb on + strand, within HMPREF1058_RS00205 at 34.310 kb on + strand, within HMPREF1058_RS00205 at 34.326 kb on + strand, within HMPREF1058_RS00205 at 34.458 kb on + strand, within HMPREF1058_RS00205 at 34.768 kb on + strand at 34.830 kb on + strand at 34.908 kb on + strand, within HMPREF1058_RS00200 at 35.213 kb on + strand, within HMPREF1058_RS00200 at 35.218 kb on + strand, within HMPREF1058_RS00200 at 35.220 kb on + strand, within HMPREF1058_RS00200 at 35.222 kb on + strand, within HMPREF1058_RS00200 at 35.224 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.401 kb on + strand, within HMPREF1058_RS00200 at 35.480 kb on + strand at 35.482 kb on + strand at 36.223 kb on - strand at 36.295 kb on - strand at 36.295 kb on - strand at 36.305 kb on + strand at 36.347 kb on + strand, within HMPREF1058_RS00190 at 36.373 kb on - strand, within HMPREF1058_RS00190 at 36.387 kb on + strand, within HMPREF1058_RS00190 at 36.410 kb on + strand, within HMPREF1058_RS00190
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 33,837 + HMPREF1058_RS00205 0.54 +0.1 33,837 + HMPREF1058_RS00205 0.54 -0.4 33,839 + HMPREF1058_RS00205 0.54 -0.9 33,839 + HMPREF1058_RS00205 0.54 +0.4 33,959 + HMPREF1058_RS00205 0.60 -0.5 34,047 + HMPREF1058_RS00205 0.64 +0.6 34,047 + HMPREF1058_RS00205 0.64 +1.3 34,167 + HMPREF1058_RS00205 0.69 -0.4 34,189 + HMPREF1058_RS00205 0.70 +2.4 34,211 + HMPREF1058_RS00205 0.71 -1.7 34,310 + HMPREF1058_RS00205 0.76 -0.0 34,326 + HMPREF1058_RS00205 0.77 -1.1 34,458 + HMPREF1058_RS00205 0.83 -0.2 34,768 + -0.2 34,830 + +0.1 34,908 + HMPREF1058_RS00200 0.13 +1.4 35,213 + HMPREF1058_RS00200 0.55 +0.4 35,218 + HMPREF1058_RS00200 0.56 -0.2 35,220 + HMPREF1058_RS00200 0.56 +1.3 35,222 + HMPREF1058_RS00200 0.56 +1.2 35,224 + HMPREF1058_RS00200 0.57 -0.6 35,321 + HMPREF1058_RS00200 0.70 +2.2 35,321 + HMPREF1058_RS00200 0.70 +0.9 35,321 + HMPREF1058_RS00200 0.70 +0.8 35,401 + HMPREF1058_RS00200 0.81 -0.4 35,480 + -0.4 35,482 + +0.1 36,223 - -0.1 36,295 - +0.1 36,295 - +1.8 36,305 + -1.3 36,347 + HMPREF1058_RS00190 0.14 -0.8 36,373 - HMPREF1058_RS00190 0.17 +0.6 36,387 + HMPREF1058_RS00190 0.19 +1.5 36,410 + HMPREF1058_RS00190 0.21 +0.5
Or see this region's nucleotide sequence